Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26290 * 2 1 4 4 C 1.53743 * 110.29902 * 237.84295 * 2 1 3 5 5 C 1.51219 * 104.57855 * 241.07111 * 4 2 1 6 6 C 1.38189 * 130.97173 * 179.97438 * 5 4 2 7 7 C 1.38217 * 120.15076 * 179.97438 * 6 5 4 8 8 C 1.38299 * 119.82823 * 359.97438 * 7 6 5 9 9 C 1.37837 * 120.22570 * 0.02562 * 8 7 6 10 10 C 1.38557 * 108.55819 * 359.72857 * 5 4 2 11 11 N 1.39832 * 111.62027 * 0.45705 * 10 5 4 12 12 C 1.34776 * 124.97838 * 179.79997 * 11 10 5 13 13 O 1.21296 * 120.00025 * 185.06138 * 12 11 10 14 14 C 1.50701 * 120.00428 * 5.06417 * 12 11 10 15 15 H 1.08998 * 109.46511 * 308.06873 * 14 12 11 16 16 C 1.53000 * 109.47044 * 68.06617 * 14 12 11 17 17 C 1.53001 * 109.47208 * 60.00288 * 16 14 12 18 18 C 1.52995 * 109.47155 * 60.00188 * 17 16 14 19 19 C 1.53000 * 109.46909 * 299.99995 * 18 17 16 20 20 C 1.52995 * 109.47533 * 188.06560 * 14 12 11 21 21 H 1.08992 * 109.47124 * 179.97438 * 20 14 12 22 22 C 1.50706 * 109.47149 * 59.99583 * 20 14 12 23 23 O 1.21295 * 119.99660 * 0.02562 * 22 20 14 24 24 N 1.34774 * 120.00260 * 179.97438 * 22 20 14 25 25 C 1.37091 * 120.00183 * 180.02562 * 24 22 20 26 26 H 1.08003 * 119.99785 * 359.97438 * 25 24 22 27 27 C 1.38943 * 120.00207 * 180.02562 * 25 24 22 28 28 N 1.31417 * 119.99961 * 179.97438 * 27 25 24 29 29 Si 1.86801 * 119.99892 * 359.97438 * 27 25 24 30 30 H 1.48499 * 109.46949 * 90.00518 * 29 27 25 31 31 H 1.48502 * 109.47094 * 210.00180 * 29 27 25 32 32 H 1.48500 * 109.46966 * 330.00122 * 29 27 25 33 33 H 1.09001 * 109.47174 * 297.93727 * 1 2 3 34 34 H 1.09003 * 109.46988 * 57.93101 * 1 2 3 35 35 H 1.08999 * 109.47163 * 177.93433 * 1 2 3 36 36 H 1.09002 * 110.40900 * 359.84197 * 4 2 1 37 37 H 1.08993 * 110.41727 * 122.17312 * 4 2 1 38 38 H 1.08002 * 119.91822 * 0.02562 * 6 5 4 39 39 H 1.07996 * 120.08583 * 179.97438 * 7 6 5 40 40 H 1.08001 * 119.88864 * 179.97438 * 8 7 6 41 41 H 1.08000 * 119.86503 * 179.97438 * 9 8 7 42 42 H 1.09007 * 109.47018 * 299.99972 * 16 14 12 43 43 H 1.08992 * 109.47118 * 180.02562 * 16 14 12 44 44 H 1.09002 * 109.46599 * 299.99679 * 17 16 14 45 45 H 1.08999 * 109.46694 * 180.02562 * 17 16 14 46 46 H 1.08992 * 109.47124 * 59.99860 * 18 17 16 47 47 H 1.09002 * 109.47226 * 180.02562 * 18 17 16 48 48 H 1.09004 * 109.47432 * 180.02562 * 19 18 17 49 49 H 1.09002 * 109.47108 * 299.99864 * 19 18 17 50 50 H 0.96999 * 119.99651 * 0.02562 * 24 22 20 51 51 H 0.97006 * 119.99654 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0634 -0.7675 -1.2207 5 6 2.8594 -1.9111 -0.6333 6 6 3.5672 -2.9296 -1.2427 7 6 4.2248 -3.8732 -0.4763 8 6 4.1736 -3.7957 0.9036 9 6 3.4689 -2.7816 1.5159 10 6 2.8056 -1.8220 0.7483 11 7 2.0384 -0.7296 1.1647 12 6 1.8054 -0.3937 2.4489 13 8 1.0506 0.5193 2.7096 14 6 2.4825 -1.1524 3.5611 15 1 2.3167 -2.2211 3.4252 16 6 3.9845 -0.8620 3.5356 17 6 4.2173 0.6381 3.7262 18 6 3.6357 1.0776 5.0714 19 6 2.1337 0.7873 5.0968 20 6 1.9009 -0.7129 4.9062 21 1 2.3904 -1.2619 5.7105 22 6 0.4215 -0.9988 4.9313 23 8 -0.1148 -1.5047 3.9682 24 7 -0.3055 -0.6932 6.0242 25 6 -1.6513 -0.9537 6.0472 26 1 -2.1289 -1.4035 5.1893 27 6 -2.4009 -0.6382 7.1738 28 7 -3.6910 -0.8875 7.1956 29 14 -1.5748 0.1404 8.6573 30 1 -1.6108 1.6190 8.5246 31 1 -2.2934 -0.2634 9.8926 32 1 -0.1636 -0.3156 8.7341 33 1 -0.3633 0.4815 0.9079 34 1 -0.3633 0.5456 -0.8709 35 1 -0.3633 -1.0270 -0.0370 36 1 1.2371 -1.1482 -1.8211 37 1 2.7054 -0.1249 -1.8231 38 1 3.6071 -2.9879 -2.3205 39 1 4.7773 -4.6690 -0.9536 40 1 4.6868 -4.5327 1.5035 41 1 3.4324 -2.7268 2.5939 42 1 4.3989 -1.1752 2.5773 43 1 4.4744 -1.4111 4.3397 44 1 3.7275 1.1868 2.9218 45 1 5.2873 0.8449 3.7076 46 1 4.1255 0.5289 5.8757 47 1 3.8011 2.1464 5.2070 48 1 1.7192 1.1008 6.0550 49 1 1.6439 1.3361 4.2924 50 1 0.1234 -0.2889 6.7946 51 1 -4.2142 -0.6676 7.9823 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245803057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -51.209666 kcal Electronic energy + Delta-G solvation = -34083.028555 eV Core-core repulsion = 29946.472406 eV Total energy + Delta-G solvation = -4136.556149 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.77792 -41.08387 -39.48808 -38.35840 -37.08604 -36.04128 -34.55906 -33.76668 -32.09280 -31.84455 -31.59567 -30.59266 -27.43873 -27.27165 -25.45497 -24.21590 -23.54979 -22.88189 -22.26666 -21.67249 -21.16514 -20.34633 -19.97539 -17.97303 -17.79418 -17.56666 -17.19077 -16.86791 -16.58071 -15.98496 -15.82825 -15.62494 -15.40122 -15.10126 -14.96161 -14.82040 -14.71239 -14.63755 -14.43738 -14.14772 -13.79721 -13.73421 -13.47135 -13.38514 -13.20954 -13.12942 -13.06152 -12.88584 -12.70906 -12.48260 -12.45336 -12.13319 -12.06666 -12.01313 -11.74550 -11.61737 -11.54806 -11.43540 -11.22616 -11.09042 -10.44915 -10.30172 -10.25227 -9.64695 -8.70317 -8.44569 -6.04263 0.36562 0.47163 1.23705 1.30557 1.38585 1.69069 1.83500 1.98982 2.18859 2.87294 2.89404 3.11869 3.27036 3.47839 3.53556 3.66370 3.78213 3.89890 3.97026 4.06585 4.14862 4.18432 4.22383 4.29696 4.36494 4.37456 4.40711 4.43548 4.50918 4.56141 4.58790 4.65324 4.72687 4.78702 4.89671 4.91914 4.99810 5.03069 5.10872 5.16505 5.17190 5.21053 5.25538 5.31708 5.32641 5.51102 5.55054 5.58231 5.61357 5.68252 5.91629 6.09755 6.50010 6.55618 6.85733 7.12451 7.37358 7.95580 8.73781 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.003479 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.765804 B = 8046.123063 C = 8607.155323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.088 0.912 4 C -0.072 4.072 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.181 4.181 10 C 0.123 3.877 11 N -0.559 5.559 12 C 0.543 3.457 13 O -0.539 6.539 14 C -0.088 4.088 15 H 0.098 0.902 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.077 4.077 21 H 0.125 0.875 22 C 0.463 3.537 23 O -0.619 6.619 24 N -0.591 5.591 25 C -0.324 4.324 26 H 0.049 0.951 27 C -0.016 4.016 28 N -0.936 5.936 29 Si 0.961 3.039 30 H -0.260 1.260 31 H -0.268 1.268 32 H -0.231 1.231 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.141 0.859 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.032 0.968 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.386 0.614 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.195 -0.723 -12.870 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 H 0.106 0.894 4 C -0.109 4.109 5 C -0.154 4.154 6 C -0.094 4.094 7 C -0.163 4.163 8 C -0.108 4.108 9 C -0.201 4.201 10 C 0.028 3.972 11 N -0.282 5.282 12 C 0.335 3.665 13 O -0.415 6.415 14 C -0.109 4.109 15 H 0.116 0.884 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.145 4.145 19 C -0.169 4.169 20 C -0.099 4.099 21 H 0.143 0.857 22 C 0.251 3.749 23 O -0.504 6.504 24 N -0.232 5.232 25 C -0.454 4.454 26 H 0.068 0.932 27 C -0.214 4.214 28 N -0.577 5.577 29 Si 0.781 3.219 30 H -0.185 1.185 31 H -0.193 1.193 32 H -0.154 1.154 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.106 0.894 43 H 0.129 0.871 44 H 0.051 0.949 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.222 0.778 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.128 -0.436 -13.140 28.359 hybrid contribution -1.379 0.446 1.030 1.778 sum 23.749 0.010 -12.110 26.658 Atomic orbital electron populations 1.22084 0.95098 1.01533 1.02654 1.21756 0.94434 0.96796 0.84482 0.89354 1.21202 0.99785 0.94340 0.95544 1.20308 1.03177 0.99795 0.92080 1.20733 0.95180 0.92315 1.01220 1.21403 1.01214 1.00056 0.93643 1.21236 0.97301 0.96583 0.95682 1.21512 1.01656 0.95748 1.01227 1.18752 0.94332 0.89431 0.94723 1.46163 1.48645 1.27182 1.06212 1.20702 0.80001 0.83159 0.82669 1.90588 1.35863 1.32495 1.82554 1.21438 0.97876 1.00284 0.91325 0.88404 1.21902 0.90000 0.98077 1.05076 1.21557 1.01991 0.94866 0.97035 1.21519 0.92680 1.02105 0.98155 1.21898 0.99230 0.93135 1.02616 1.21143 0.90302 0.99854 0.98579 0.85679 1.20869 0.90268 0.81226 0.82492 1.90508 1.74307 1.48983 1.36630 1.41968 1.07613 1.57610 1.15985 1.18965 0.83779 1.40240 1.02385 0.93245 1.26091 0.95947 0.97764 1.01588 1.69812 1.07605 1.48616 1.31683 0.85424 0.80075 0.79266 0.77180 1.18497 1.19301 1.15408 0.94799 0.88358 0.94058 0.88155 0.86537 0.83168 0.82750 0.82956 0.84185 0.89434 0.87148 0.94908 0.88575 0.89162 0.90826 0.92021 0.91301 0.77826 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 9.06 71.98 0.65 -4.37 16 2 C 0.13 3.55 3.68 45.24 0.17 3.71 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.07 -1.39 6.58 30.26 0.20 -1.19 16 5 C -0.15 -3.28 6.23 -19.63 -0.12 -3.40 16 6 C -0.08 -1.23 10.04 22.25 0.22 -1.01 16 7 C -0.14 -2.10 10.06 22.28 0.22 -1.88 16 8 C -0.09 -1.52 10.02 22.19 0.22 -1.30 16 9 C -0.18 -4.20 7.13 22.51 0.16 -4.04 16 10 C 0.12 3.32 6.09 38.28 0.23 3.56 16 11 N -0.56 -18.12 2.89 -607.16 -1.75 -19.88 16 12 C 0.54 20.60 4.25 87.66 0.37 20.98 16 13 O -0.54 -24.94 10.79 14.77 0.16 -24.78 16 14 C -0.09 -2.78 1.28 -11.54 -0.01 -2.80 16 15 H 0.10 3.26 5.69 -2.39 -0.01 3.25 16 16 C -0.11 -2.35 4.28 30.59 0.13 -2.22 16 17 C -0.12 -2.41 5.70 30.59 0.17 -2.23 16 18 C -0.11 -2.30 5.92 30.59 0.18 -2.11 16 19 C -0.13 -4.18 4.83 30.59 0.15 -4.04 16 20 C -0.08 -2.69 2.28 -11.54 -0.03 -2.72 16 21 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 22 C 0.46 23.19 6.21 87.66 0.54 23.73 16 23 O -0.62 -37.08 13.97 14.77 0.21 -36.87 16 24 N -0.59 -30.83 4.98 -306.99 -1.53 -32.36 16 25 C -0.32 -20.47 10.16 84.04 0.85 -19.62 16 26 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 27 C -0.02 -0.93 5.50 84.92 0.47 -0.47 16 28 N -0.94 -59.33 13.96 21.66 0.30 -59.03 16 29 Si 0.96 41.59 27.74 68.60 1.90 43.50 16 30 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 31 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 32 H -0.23 -8.49 6.52 99.48 0.65 -7.84 16 33 H 0.03 1.41 6.60 -2.39 -0.02 1.39 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 1.73 7.70 -2.39 -0.02 1.71 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.14 3.21 3.44 -2.91 -0.01 3.20 16 42 H 0.09 1.73 5.15 -2.38 -0.01 1.72 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 0.85 7.22 -2.39 -0.02 0.83 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.06 1.91 7.57 -2.39 -0.02 1.90 16 49 H 0.07 2.74 5.23 -2.39 -0.01 2.73 16 50 H 0.39 17.13 5.18 -92.71 -0.48 16.65 16 51 H 0.28 16.09 8.31 -92.70 -0.77 15.32 16 Total: -1.00 -90.12 381.28 4.51 -85.62 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: 0.43 Total: 45.23 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 4.79 Total: -1.43 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -2.98 Total: -111.27 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: 0.37 Total: -61.65 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.90 Total: 43.50 kcal Total: -90.12 4.51 -85.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245803057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.407 kcal (2) G-P(sol) polarization free energy of solvation -90.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds