Wall clock time and date at job start Tue Mar 31 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47237 * 2 1 4 4 C 1.50697 * 109.47109 * 239.99983 * 2 1 3 5 5 H 1.07999 * 120.00028 * 245.62169 * 4 2 1 6 6 C 1.37877 * 119.99883 * 65.61495 * 4 2 1 7 7 N 1.31512 * 119.99916 * 196.97349 * 6 4 2 8 8 Si 1.86798 * 120.00059 * 17.25803 * 6 4 2 9 9 H 1.48500 * 109.47180 * 179.71899 * 8 6 4 10 10 H 1.48497 * 109.47063 * 299.72121 * 8 6 4 11 11 H 1.48504 * 109.46829 * 59.72088 * 8 6 4 12 12 N 1.46501 * 109.47066 * 120.00088 * 2 1 3 13 13 C 1.46502 * 119.99990 * 59.99653 * 12 2 1 14 14 S 1.65606 * 119.99949 * 239.99956 * 12 2 1 15 15 O 1.42098 * 106.40018 * 203.54140 * 14 12 2 16 16 O 1.42101 * 106.40004 * 336.45806 * 14 12 2 17 17 N 1.65598 * 107.21806 * 89.99829 * 14 12 2 18 18 C 1.46501 * 119.99884 * 65.00259 * 17 14 12 19 19 C 1.53004 * 109.47457 * 164.99900 * 18 17 14 20 20 C 1.50698 * 109.47388 * 179.97438 * 19 18 17 21 21 C 1.38260 * 119.99695 * 269.72772 * 20 19 18 22 22 C 1.38214 * 119.99439 * 179.79137 * 21 20 19 23 23 C 1.38255 * 120.00139 * 0.45577 * 22 21 20 24 24 C 1.38207 * 120.00011 * 359.77648 * 23 22 21 25 25 N 1.48020 * 120.00175 * 179.97438 * 24 23 22 26 26 O 1.21792 * 120.00344 * 180.02562 * 25 24 23 27 27 O 1.21807 * 119.99836 * 0.02562 * 25 24 23 28 28 C 1.38210 * 120.00082 * 89.99621 * 20 19 18 29 29 H 1.09007 * 109.46976 * 305.88510 * 1 2 3 30 30 H 1.08995 * 109.46948 * 65.88885 * 1 2 3 31 31 H 1.09001 * 109.47142 * 185.89183 * 1 2 3 32 32 H 0.97003 * 120.00480 * 355.09525 * 7 6 4 33 33 H 1.09001 * 109.46622 * 90.00156 * 13 12 2 34 34 H 1.08999 * 109.47047 * 209.99757 * 13 12 2 35 35 H 1.08998 * 109.47596 * 330.00148 * 13 12 2 36 36 H 0.96997 * 120.00015 * 245.00257 * 17 14 12 37 37 H 1.09009 * 109.47120 * 284.99762 * 18 17 14 38 38 H 1.09001 * 109.47306 * 44.99415 * 18 17 14 39 39 H 1.08993 * 109.46593 * 300.00253 * 19 18 17 40 40 H 1.09006 * 109.46563 * 59.99484 * 19 18 17 41 41 H 1.07998 * 120.00216 * 359.97438 * 21 20 19 42 42 H 1.08007 * 119.99596 * 180.25006 * 22 21 20 43 43 H 1.07998 * 119.99826 * 179.78712 * 23 22 21 44 44 H 1.08002 * 119.99752 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1339 6 6 1.7973 -0.1757 -2.4794 7 7 1.9262 -0.9269 -3.5511 8 14 1.3036 1.6178 -2.6497 9 1 1.1175 1.9457 -4.0861 10 1 0.0321 1.8527 -1.9195 11 1 2.3689 2.4808 -2.0790 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1142 2.2863 15 8 3.7119 -0.8789 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8091 3.3998 18 6 1.1510 -0.0352 4.2817 19 6 0.6087 0.8075 5.4379 20 6 -0.2248 -0.0608 6.3447 21 6 -1.5820 -0.1947 6.1178 22 6 -2.3456 -0.9946 6.9469 23 6 -1.7539 -1.6532 8.0088 24 6 -0.3981 -1.5154 8.2385 25 7 0.2353 -2.2201 9.3758 26 8 1.4301 -2.0983 9.5785 27 8 -0.4384 -2.9217 10.1089 28 6 0.3666 -0.7188 7.4065 29 1 -0.3633 0.6024 0.8327 30 1 -0.3633 0.4198 -0.9380 31 1 -0.3633 -1.0222 0.1055 32 1 2.2550 -1.8359 -3.4697 33 1 2.4157 -2.7377 0.9717 34 1 1.6238 -2.2852 2.5002 35 1 0.6904 -2.3003 0.9847 36 1 1.9055 1.7750 3.4681 37 1 0.3188 -0.4567 3.7178 38 1 1.7670 -0.8424 4.6782 39 1 1.4408 1.2289 6.0017 40 1 -0.0073 1.6147 5.0413 41 1 -2.0450 0.3232 5.2909 42 1 -3.4051 -1.1024 6.7672 43 1 -2.3513 -2.2754 8.6587 44 1 1.4261 -0.6110 7.5861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282308067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:07 Heat of formation + Delta-G solvation = -54.270100 kcal Electronic energy + Delta-G solvation = -29782.075731 eV Core-core repulsion = 25443.738723 eV Total energy + Delta-G solvation = -4338.337008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49584 -40.15677 -36.95910 -36.87199 -36.53326 -36.22006 -35.43454 -33.15126 -32.62756 -32.32908 -29.92127 -28.71922 -26.96114 -25.90123 -24.69326 -24.08907 -23.07136 -21.90128 -20.77705 -19.47841 -18.97762 -18.75111 -17.83385 -17.63052 -17.44759 -17.11476 -16.89247 -16.40254 -16.13410 -15.20518 -15.06196 -14.60170 -14.18408 -14.09993 -13.83330 -13.62329 -13.35653 -13.11648 -12.79752 -12.65774 -12.31524 -12.21220 -12.11218 -12.00235 -11.85679 -11.82856 -11.68270 -11.63082 -11.52390 -11.43725 -11.43659 -11.34871 -10.90490 -10.52028 -10.10251 -10.06995 -9.84067 -9.74764 -9.55944 -9.22115 -8.48398 -8.14814 -6.53612 -4.17240 -0.56073 0.37177 0.93159 0.98302 1.04917 2.73720 3.21937 3.28003 3.42445 3.54336 3.77507 3.91066 3.95456 4.19655 4.31718 4.37048 4.40041 4.51945 4.54236 4.77277 4.79844 4.97667 5.12832 5.15826 5.19592 5.29122 5.33039 5.43269 5.46108 5.66948 5.77075 5.79144 5.89261 6.07842 6.11501 6.24776 6.27442 6.41711 6.48246 6.81540 6.93316 7.21785 7.30578 7.40207 7.89091 8.30482 8.82580 9.51603 10.84938 Molecular weight = 357.12amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002429 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.752733 B =11526.072321 C =11991.997538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.245 3.755 3 H 0.048 0.952 4 C -0.606 4.606 5 H 0.064 0.936 6 C 0.034 3.966 7 N -0.901 5.901 8 Si 1.035 2.965 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.276 1.276 12 N -0.983 5.983 13 C 0.110 3.890 14 S 2.777 3.223 15 O -0.990 6.990 16 O -0.972 6.972 17 N -1.135 6.135 18 C 0.124 3.876 19 C -0.089 4.089 20 C -0.077 4.077 21 C -0.061 4.061 22 C -0.114 4.114 23 C -0.059 4.059 24 C -0.042 4.042 25 N 0.028 4.972 26 O -0.157 6.157 27 O -0.162 6.162 28 C -0.051 4.051 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 3.181 21.730 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.140 3.860 3 H 0.066 0.934 4 C -0.645 4.645 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.534 5.534 8 Si 0.863 3.137 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.825 5.825 13 C -0.037 4.037 14 S 2.786 3.214 15 O -0.973 6.973 16 O -0.956 6.956 17 N -0.894 5.894 18 C -0.003 4.003 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.079 4.079 22 C -0.132 4.132 23 C -0.078 4.078 24 C -0.125 4.125 25 N 0.547 4.453 26 O -0.373 6.373 27 O -0.377 6.377 28 C -0.070 4.070 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.171 0.829 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.081 4.492 20.055 23.349 hybrid contribution 0.160 -1.126 1.441 1.836 sum -10.921 3.365 21.496 24.345 Atomic orbital electron populations 1.22551 0.98756 1.00579 1.00186 1.18990 0.90741 0.93102 0.83127 0.93441 1.22158 1.40969 1.10656 0.90712 0.91791 1.25703 0.94702 1.04882 0.91928 1.70857 1.41203 1.10082 1.31289 0.84206 0.77318 0.75664 0.76517 1.20808 1.19960 1.20142 1.57480 1.70097 1.19840 1.35128 1.21178 1.01910 0.81894 0.98670 1.02066 0.73614 0.73252 0.72462 1.93558 1.68772 1.60580 1.74382 1.93620 1.74096 1.56024 1.71831 1.56270 1.62653 1.17401 1.53042 1.21188 0.95255 0.93275 0.90611 1.20867 0.99578 0.97163 0.95152 1.19801 0.94324 0.98328 0.95425 1.21653 0.93085 0.95156 0.98011 1.21251 1.01314 0.96677 0.93992 1.21108 0.91797 0.97414 0.97510 1.21123 0.94414 1.04130 0.92833 1.43644 1.01002 0.99340 1.01295 1.94569 0.97858 1.67803 1.77114 1.94539 1.63199 1.35998 1.44000 1.21033 1.01610 0.92366 0.92002 0.95692 0.91619 0.93015 0.92108 0.92989 0.93268 0.90914 0.75376 0.91340 0.90306 0.89169 0.89010 0.83589 0.83313 0.82946 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.96 37.16 0.33 -2.74 16 2 C 0.24 5.41 2.21 -69.08 -0.15 5.26 16 3 H 0.05 1.10 5.57 -51.93 -0.29 0.81 16 4 C -0.61 -16.19 8.68 -34.44 -0.30 -16.49 16 5 H 0.06 1.85 7.75 -52.49 -0.41 1.44 16 6 C 0.03 0.95 5.30 -17.82 -0.09 0.85 16 7 N -0.90 -26.69 13.70 55.43 0.76 -25.93 16 8 Si 1.04 24.05 26.29 -169.99 -4.47 19.58 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.27 -5.59 5.74 56.52 0.32 -5.27 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.98 -18.69 3.12 -115.85 -0.36 -19.05 16 13 C 0.11 1.82 9.48 59.85 0.57 2.39 16 14 S 2.78 49.31 6.09 -107.50 -0.66 48.66 16 15 O -0.99 -19.32 16.68 -57.17 -0.95 -20.27 16 16 O -0.97 -20.86 16.70 -57.17 -0.95 -21.81 16 17 N -1.13 -13.26 6.05 -10.61 -0.06 -13.32 16 18 C 0.12 1.12 6.23 -4.04 -0.03 1.10 16 19 C -0.09 -0.53 5.49 -27.88 -0.15 -0.69 16 20 C -0.08 -0.47 5.13 -104.62 -0.54 -1.01 16 21 C -0.06 -0.29 9.70 -39.58 -0.38 -0.67 16 22 C -0.11 -0.51 10.05 -39.58 -0.40 -0.91 16 23 C -0.06 -0.38 9.56 -39.59 -0.38 -0.76 16 24 C -0.04 -0.37 6.85 -79.95 -0.55 -0.92 16 25 N 0.03 0.31 4.45 33.96 0.15 0.46 16 26 O -0.16 -1.97 18.45 -29.46 -0.54 -2.51 16 27 O -0.16 -1.93 18.45 -29.46 -0.54 -2.47 16 28 C -0.05 -0.39 9.21 -39.59 -0.36 -0.76 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.33 4.85 -51.93 -0.25 1.08 16 31 H 0.05 0.93 6.45 -51.93 -0.33 0.60 16 32 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 33 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 35 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 36 H 0.41 3.87 8.65 -34.47 -0.30 3.57 16 37 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 39 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 43 H 0.15 0.79 7.61 -52.49 -0.40 0.39 16 44 H 0.16 1.15 7.61 -52.49 -0.40 0.75 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -35.44 382.51 -10.00 -45.44 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.70 Total: 0.81 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.43 Total: -15.34 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.48 Total: -57.84 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -3.00 Total: -47.07 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.47 Total: 19.58 kcal Atomic # 16 Polarization: 49.31 SS G_CDS: -0.66 Total: 48.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.44 -10.00 -45.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282308067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.833 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds