Wall clock time and date at job start Tue Mar 31 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47285 * 2 1 4 4 C 1.38682 * 119.89664 * 89.99703 * 3 2 1 5 5 C 1.37847 * 120.65298 * 180.02562 * 4 3 2 6 6 C 1.38962 * 119.96941 * 359.97438 * 5 4 3 7 7 O 1.34914 * 133.11363 * 180.02562 * 6 5 4 8 8 C 1.33799 * 111.35306 * 179.97438 * 7 6 5 9 9 C 1.36053 * 109.85252 * 359.97438 * 8 7 6 10 10 C 1.47078 * 127.14358 * 179.97438 * 9 8 7 11 11 O 1.21652 * 120.00281 * 131.03332 * 10 9 8 12 12 N 1.34769 * 120.00160 * 311.03237 * 10 9 8 13 13 C 1.46969 * 120.59714 * 183.76609 * 12 10 9 14 14 C 1.53809 * 108.40293 * 124.75677 * 13 12 10 15 15 N 1.46970 * 108.57977 * 49.63631 * 14 13 12 16 16 C 1.34773 * 120.59550 * 124.62596 * 15 14 13 17 17 O 1.21681 * 120.00047 * 185.83785 * 16 15 14 18 18 C 1.46381 * 119.99830 * 5.83711 * 16 15 14 19 19 H 1.07995 * 119.99687 * 354.77942 * 18 16 15 20 20 C 1.40046 * 119.99801 * 174.77236 * 18 16 15 21 21 N 1.30668 * 120.00056 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99646 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47097 * 60.00843 * 22 20 18 24 24 H 1.48501 * 109.46919 * 179.97438 * 22 20 18 25 25 H 1.48488 * 109.47353 * 300.00344 * 22 20 18 26 26 C 1.46965 * 118.81157 * 304.65026 * 15 14 13 27 27 C 1.46964 * 120.59584 * 4.04130 * 12 10 9 28 28 C 1.40229 * 119.26253 * 359.97438 * 6 5 4 29 29 C 1.37839 * 119.89859 * 269.96609 * 3 2 1 30 30 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47431 * 300.00249 * 1 2 3 32 32 H 1.09003 * 109.46910 * 60.00076 * 1 2 3 33 33 H 1.08997 * 109.47256 * 240.00237 * 2 1 3 34 34 H 1.09003 * 109.46910 * 119.99924 * 2 1 3 35 35 H 1.08001 * 119.67647 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.01132 * 180.02562 * 5 4 3 37 37 H 1.07996 * 125.07748 * 180.26632 * 8 7 6 38 38 H 1.09002 * 109.60905 * 244.54143 * 13 12 10 39 39 H 1.08996 * 109.60619 * 5.04640 * 13 12 10 40 40 H 1.09005 * 109.73911 * 289.85278 * 14 13 12 41 41 H 1.08996 * 109.53557 * 169.30260 * 14 13 12 42 42 H 0.97000 * 119.99600 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.61058 * 295.48531 * 26 15 14 44 44 H 1.08998 * 109.75356 * 175.05180 * 26 15 14 45 45 H 1.09005 * 109.60743 * 354.94994 * 27 12 10 46 46 H 1.09003 * 109.61165 * 115.45826 * 27 12 10 47 47 H 1.08001 * 120.18426 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.2023 5 6 2.7217 3.3723 1.2205 6 6 2.9584 4.0416 0.0259 7 8 3.3977 5.2840 -0.2635 8 6 3.4678 5.4803 -1.5852 9 6 3.0714 4.3561 -2.2410 10 6 3.0008 4.1552 -3.6962 11 8 3.4933 3.1624 -4.1979 12 7 2.3904 5.0710 -4.4741 13 6 2.2396 4.8446 -5.9184 14 6 0.7484 4.9648 -6.2757 15 7 0.2269 6.2105 -5.6958 16 6 -0.3827 7.1267 -6.4738 17 8 -0.7154 8.1989 -6.0044 18 6 -0.6447 6.8320 -7.8835 19 1 -0.2753 5.9165 -8.3214 20 6 -1.3744 7.7371 -8.6642 21 7 -1.8210 8.8449 -8.1344 22 14 -1.7081 7.3612 -10.4634 23 1 -2.4762 6.0948 -10.5703 24 1 -2.4951 8.4688 -11.0627 25 1 -0.4191 7.2210 -11.1871 26 6 0.3826 6.4395 -4.2525 27 6 1.8689 6.3167 -3.8943 28 6 2.7257 3.3800 -1.1884 29 6 2.2621 2.0684 -1.1949 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0807 1.5568 2.1335 36 1 2.8980 3.8697 2.1627 37 1 3.7951 6.3932 -2.0605 38 1 2.8116 5.5925 -6.4676 39 1 2.5988 3.8472 -6.1717 40 1 0.2022 4.1145 -5.8672 41 1 0.6341 4.9898 -7.3594 42 1 -2.3262 9.4719 -8.6753 43 1 -0.1895 5.6941 -3.7001 44 1 0.0260 7.4373 -3.9972 45 1 1.9831 6.2917 -2.8106 46 1 2.4150 7.1670 -4.3027 47 1 2.0826 1.5605 -2.1310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294408369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:02 Heat of formation + Delta-G solvation = -29.637194 kcal Electronic energy + Delta-G solvation = -31477.591476 eV Core-core repulsion = 27206.137686 eV Total energy + Delta-G solvation = -4271.453791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.81561 -39.85225 -38.67779 -37.92244 -35.86049 -33.95351 -33.54163 -32.83226 -32.47608 -31.02952 -29.84428 -29.22483 -27.51492 -26.09522 -24.53266 -23.78652 -23.38294 -22.91178 -21.45228 -21.30981 -19.90237 -18.78374 -17.86528 -17.34464 -16.77404 -16.41884 -16.00074 -15.94443 -15.48345 -15.31471 -15.00344 -14.79019 -14.59146 -14.30241 -14.15433 -14.09538 -13.78985 -13.59532 -13.46854 -13.23834 -12.81594 -12.68327 -12.58148 -12.03428 -11.87875 -11.71404 -11.56098 -11.52949 -11.32433 -11.22695 -11.05723 -11.00817 -10.97588 -10.79478 -10.36871 -10.30317 -10.18589 -9.83435 -8.95645 -8.73875 -8.71285 -8.41828 -7.70455 -7.30936 -6.28573 -4.74290 0.58708 1.05450 1.70489 2.42212 2.73849 3.10369 3.11051 3.16522 3.17804 3.45304 4.01244 4.12682 4.27131 4.41382 4.46586 4.47135 4.63976 4.78787 4.87470 5.00752 5.03138 5.11288 5.15414 5.19390 5.27696 5.38659 5.46189 5.49066 5.54650 5.58423 5.61350 5.68323 5.82570 5.89510 5.91658 5.93134 5.96330 6.00782 6.09330 6.24976 6.30246 6.31309 6.36589 6.46714 6.64660 6.83594 7.36913 7.41749 7.47138 8.00961 8.17532 8.22594 8.93362 9.29514 10.46793 10.65405 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002401 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.854776 B =11659.860588 C =12177.295316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.091 4.091 5 C -0.102 4.102 6 C 0.045 3.955 7 O -0.183 6.183 8 C 0.055 3.945 9 C -0.215 4.215 10 C 0.586 3.414 11 O -0.539 6.539 12 N -0.597 5.597 13 C 0.097 3.903 14 C 0.110 3.890 15 N -0.643 5.643 16 C 0.559 3.441 17 O -0.576 6.576 18 C -0.545 4.545 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.767 5.767 22 Si 0.907 3.093 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.267 1.267 26 C 0.108 3.892 27 C 0.083 3.917 28 C -0.089 4.089 29 C -0.061 4.061 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.219 0.781 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.107 0.893 42 H 0.270 0.730 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.706 -12.725 16.567 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.002 4.002 7 O -0.083 6.083 8 C -0.012 4.012 9 C -0.220 4.220 10 C 0.374 3.626 11 O -0.418 6.418 12 N -0.329 5.329 13 C -0.026 4.026 14 C -0.015 4.015 15 N -0.381 5.381 16 C 0.366 3.634 17 O -0.459 6.459 18 C -0.581 4.581 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.395 5.395 22 Si 0.732 3.268 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.017 4.017 27 C -0.041 4.041 28 C -0.091 4.091 29 C -0.079 4.079 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.706 -12.266 16.719 22.489 hybrid contribution -0.129 -0.087 -1.057 1.069 sum 8.577 -12.352 15.662 21.713 Atomic orbital electron populations 1.21771 0.94538 1.01834 1.02451 1.20511 0.96304 0.91994 1.03076 1.19792 1.00476 0.96863 0.92390 1.20791 0.98862 0.93237 0.98010 1.19894 1.03256 0.94322 0.94527 1.19546 1.01843 0.83330 0.95464 1.83853 1.69671 1.30321 1.24456 1.24475 0.98314 0.98781 0.79675 1.20927 1.12059 0.94932 0.94049 1.17178 0.78185 0.82780 0.84440 1.90781 1.47093 1.29209 1.74671 1.48001 1.56462 1.19458 1.08988 1.22302 0.98544 1.02926 0.78827 1.21897 0.90894 0.87655 1.01041 1.48192 1.63631 1.20494 1.05825 1.18274 0.76504 0.82026 0.86602 1.90592 1.55948 1.24135 1.75178 1.20924 1.36963 1.06646 0.93558 0.90894 1.25723 0.93790 0.93980 0.99706 1.69992 1.25863 1.07229 1.36436 0.86436 0.79112 0.78732 0.82557 1.19203 1.20518 1.19162 1.21457 0.92736 1.02757 0.84757 1.22501 0.97105 0.85827 0.98621 1.19371 1.03582 0.95200 0.90914 1.20426 0.97026 0.92018 0.98419 0.92288 0.92498 0.92348 0.90782 0.90843 0.84711 0.84816 0.76485 0.90817 0.88709 0.93394 0.87555 0.91921 0.93499 0.88449 0.89683 0.90530 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.10 -0.93 5.13 -104.60 -0.54 -1.47 16 4 C -0.09 -0.78 9.66 -39.56 -0.38 -1.16 16 5 C -0.10 -0.96 10.06 -39.46 -0.40 -1.36 16 6 C 0.04 0.53 7.39 -38.57 -0.28 0.25 16 7 O -0.18 -2.11 10.53 5.34 0.06 -2.05 16 8 C 0.06 0.60 9.63 29.95 0.29 0.89 16 9 C -0.22 -2.95 5.38 -103.25 -0.56 -3.50 16 10 C 0.59 9.29 7.61 -12.68 -0.10 9.19 16 11 O -0.54 -10.04 16.52 5.23 0.09 -9.95 16 12 N -0.60 -9.18 2.94 -173.61 -0.51 -9.69 16 13 C 0.10 1.54 6.61 -3.37 -0.02 1.52 16 14 C 0.11 1.99 6.49 -3.36 -0.02 1.97 16 15 N -0.64 -13.89 2.95 -173.87 -0.51 -14.40 16 16 C 0.56 15.19 7.61 -12.99 -0.10 15.09 16 17 O -0.58 -17.81 14.46 5.21 0.08 -17.74 16 18 C -0.54 -14.61 8.86 -35.63 -0.32 -14.93 16 19 H 0.07 1.77 5.68 -52.49 -0.30 1.47 16 20 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 21 N -0.77 -22.26 11.84 55.55 0.66 -21.60 16 22 Si 0.91 19.45 29.56 -169.99 -5.02 14.42 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C 0.11 1.98 6.59 -3.60 -0.02 1.95 16 27 C 0.08 1.20 6.05 -3.60 -0.02 1.18 16 28 C -0.09 -1.20 6.39 -104.98 -0.67 -1.87 16 29 C -0.06 -0.75 9.73 -39.40 -0.38 -1.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.22 1.60 7.47 -52.49 -0.39 1.21 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.11 1.96 5.35 -51.93 -0.28 1.68 16 42 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.10 1.95 7.00 -51.93 -0.36 1.59 16 45 H 0.09 1.01 4.45 -51.93 -0.23 0.78 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -35.67 387.37 -8.88 -44.55 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.13 Total: 3.23 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -3.42 Total: 7.39 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.37 Total: -45.69 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: 0.22 Total: -29.74 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.67 -8.88 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294408369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.915 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds