Wall clock time and date at job start Tue Mar 31 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47285 * 2 1 4 4 C 1.38682 * 119.89664 * 89.99703 * 3 2 1 5 5 C 1.37847 * 120.65298 * 180.02562 * 4 3 2 6 6 C 1.38962 * 119.96941 * 359.97438 * 5 4 3 7 7 O 1.34914 * 133.11363 * 180.02562 * 6 5 4 8 8 C 1.33799 * 111.35306 * 179.97438 * 7 6 5 9 9 C 1.36053 * 109.85252 * 359.97438 * 8 7 6 10 10 C 1.47078 * 127.14358 * 179.97438 * 9 8 7 11 11 O 1.21652 * 120.00281 * 131.03332 * 10 9 8 12 12 N 1.34769 * 120.00160 * 311.03237 * 10 9 8 13 13 C 1.46969 * 120.59714 * 183.76609 * 12 10 9 14 14 C 1.53809 * 108.40293 * 124.75677 * 13 12 10 15 15 N 1.46970 * 108.57977 * 49.63631 * 14 13 12 16 16 C 1.34773 * 120.59550 * 124.62596 * 15 14 13 17 17 O 1.21681 * 120.00047 * 185.83785 * 16 15 14 18 18 C 1.46381 * 119.99830 * 5.83711 * 16 15 14 19 19 H 1.07995 * 119.99687 * 354.77942 * 18 16 15 20 20 C 1.40046 * 119.99801 * 174.77236 * 18 16 15 21 21 N 1.30668 * 120.00056 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99646 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47097 * 60.00843 * 22 20 18 24 24 H 1.48501 * 109.46919 * 179.97438 * 22 20 18 25 25 H 1.48488 * 109.47353 * 300.00344 * 22 20 18 26 26 C 1.46965 * 118.81157 * 304.65026 * 15 14 13 27 27 C 1.46964 * 120.59584 * 4.04130 * 12 10 9 28 28 C 1.40229 * 119.26253 * 359.97438 * 6 5 4 29 29 C 1.37839 * 119.89859 * 269.96609 * 3 2 1 30 30 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47431 * 300.00249 * 1 2 3 32 32 H 1.09003 * 109.46910 * 60.00076 * 1 2 3 33 33 H 1.08997 * 109.47256 * 240.00237 * 2 1 3 34 34 H 1.09003 * 109.46910 * 119.99924 * 2 1 3 35 35 H 1.08001 * 119.67647 * 0.02562 * 4 3 2 36 36 H 1.08003 * 120.01132 * 180.02562 * 5 4 3 37 37 H 1.07996 * 125.07748 * 180.26632 * 8 7 6 38 38 H 1.09002 * 109.60905 * 244.54143 * 13 12 10 39 39 H 1.08996 * 109.60619 * 5.04640 * 13 12 10 40 40 H 1.09005 * 109.73911 * 289.85278 * 14 13 12 41 41 H 1.08996 * 109.53557 * 169.30260 * 14 13 12 42 42 H 0.97000 * 119.99600 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.61058 * 295.48531 * 26 15 14 44 44 H 1.08998 * 109.75356 * 175.05180 * 26 15 14 45 45 H 1.09005 * 109.60743 * 354.94994 * 27 12 10 46 46 H 1.09003 * 109.61165 * 115.45826 * 27 12 10 47 47 H 1.08001 * 120.18426 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.2023 5 6 2.7217 3.3723 1.2205 6 6 2.9584 4.0416 0.0259 7 8 3.3977 5.2840 -0.2635 8 6 3.4678 5.4803 -1.5852 9 6 3.0714 4.3561 -2.2410 10 6 3.0008 4.1552 -3.6962 11 8 3.4933 3.1624 -4.1979 12 7 2.3904 5.0710 -4.4741 13 6 2.2396 4.8446 -5.9184 14 6 0.7484 4.9648 -6.2757 15 7 0.2269 6.2105 -5.6958 16 6 -0.3827 7.1267 -6.4738 17 8 -0.7154 8.1989 -6.0044 18 6 -0.6447 6.8320 -7.8835 19 1 -0.2753 5.9165 -8.3214 20 6 -1.3744 7.7371 -8.6642 21 7 -1.8210 8.8449 -8.1344 22 14 -1.7081 7.3612 -10.4634 23 1 -2.4762 6.0948 -10.5703 24 1 -2.4951 8.4688 -11.0627 25 1 -0.4191 7.2210 -11.1871 26 6 0.3826 6.4395 -4.2525 27 6 1.8689 6.3167 -3.8943 28 6 2.7257 3.3800 -1.1884 29 6 2.2621 2.0684 -1.1949 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0807 1.5568 2.1335 36 1 2.8980 3.8697 2.1627 37 1 3.7951 6.3932 -2.0605 38 1 2.8116 5.5925 -6.4676 39 1 2.5988 3.8472 -6.1717 40 1 0.2022 4.1145 -5.8672 41 1 0.6341 4.9898 -7.3594 42 1 -2.3262 9.4719 -8.6753 43 1 -0.1895 5.6941 -3.7001 44 1 0.0260 7.4373 -3.9972 45 1 1.9831 6.2917 -2.8106 46 1 2.4150 7.1670 -4.3027 47 1 2.0826 1.5605 -2.1310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294408369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:01 Heat of formation + Delta-G solvation = -51.797360 kcal Electronic energy + Delta-G solvation = -31478.552413 eV Core-core repulsion = 27206.137686 eV Total energy + Delta-G solvation = -4272.414728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.69252 -41.19496 -39.64111 -39.43609 -37.54243 -34.99489 -34.69927 -34.60419 -33.82837 -32.40668 -30.78112 -29.98540 -29.14860 -27.87311 -25.40495 -25.00004 -24.60584 -23.83708 -22.85930 -22.06161 -21.42340 -20.10177 -19.05319 -18.27553 -18.24327 -17.75613 -17.48664 -16.99503 -16.84596 -16.38747 -16.25074 -16.19982 -15.88257 -15.76047 -15.46121 -15.14094 -14.76599 -14.58390 -14.42697 -14.32402 -14.19204 -13.80635 -13.57257 -13.48360 -13.43219 -13.18117 -12.90809 -12.71778 -12.59457 -12.43958 -12.30572 -12.27650 -12.05508 -12.03812 -11.96031 -11.73663 -11.36214 -11.05311 -10.92575 -10.17460 -9.81901 -9.51874 -9.30003 -9.03857 -8.30454 -6.85192 -0.25028 0.24088 0.75686 1.40955 1.43168 1.49857 1.54765 1.63891 1.92758 2.23804 2.44727 2.62989 2.76998 3.24652 3.32406 3.56572 3.77682 3.79164 3.86806 3.88268 3.96801 4.13781 4.17298 4.21494 4.24680 4.35115 4.39940 4.48494 4.50869 4.51845 4.63235 4.69239 4.72725 4.79590 4.82145 4.98707 4.99958 5.08106 5.11841 5.17822 5.25078 5.30585 5.37294 5.39648 5.55497 5.60490 5.67733 6.01255 6.08718 6.17945 6.34664 6.87310 6.93205 7.34760 8.43289 8.64989 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002401 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.854776 B =11659.860588 C =12177.295316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.087 4.087 5 C -0.096 4.096 6 C 0.026 3.974 7 O -0.181 6.181 8 C 0.081 3.919 9 C -0.254 4.254 10 C 0.592 3.408 11 O -0.573 6.573 12 N -0.597 5.597 13 C 0.105 3.895 14 C 0.112 3.888 15 N -0.645 5.645 16 C 0.545 3.455 17 O -0.626 6.626 18 C -0.569 4.569 19 H 0.094 0.906 20 C 0.032 3.968 21 N -0.820 5.820 22 Si 0.992 3.008 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.253 1.253 26 C 0.105 3.895 27 C 0.098 3.902 28 C -0.114 4.114 29 C -0.093 4.093 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.274 0.726 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.581 -14.068 17.963 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.104 4.104 5 C -0.114 4.114 6 C -0.020 4.020 7 O -0.080 6.080 8 C 0.013 3.987 9 C -0.258 4.258 10 C 0.382 3.618 11 O -0.454 6.454 12 N -0.329 5.329 13 C -0.018 4.018 14 C -0.013 4.013 15 N -0.382 5.382 16 C 0.351 3.649 17 O -0.513 6.513 18 C -0.605 4.605 19 H 0.112 0.888 20 C -0.184 4.184 21 N -0.450 5.450 22 Si 0.811 3.189 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.177 1.177 26 C -0.019 4.019 27 C -0.026 4.026 28 C -0.115 4.115 29 C -0.111 4.111 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.190 0.810 36 H 0.181 0.819 37 H 0.269 0.731 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.134 0.866 46 H 0.101 0.899 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.610 -13.658 18.153 24.666 hybrid contribution -0.398 0.240 -1.344 1.422 sum 9.212 -13.418 16.809 23.397 Atomic orbital electron populations 1.21756 0.94310 1.02557 1.01789 1.20582 0.96384 0.90803 1.04050 1.20117 0.98993 0.97737 0.92054 1.21238 0.97420 0.92989 0.98798 1.20369 1.01733 0.94519 0.94816 1.19896 1.02865 0.83433 0.95834 1.83868 1.69389 1.30245 1.24502 1.25045 0.95526 0.98745 0.79351 1.20834 1.15399 0.96747 0.92863 1.17429 0.77177 0.81904 0.85304 1.90751 1.48598 1.30509 1.75528 1.48012 1.56396 1.19741 1.08729 1.22152 0.96665 1.03473 0.79498 1.21982 0.92403 0.86125 1.00741 1.48019 1.62632 1.20565 1.06934 1.18599 0.76563 0.82150 0.87541 1.90544 1.58097 1.26377 1.76268 1.21466 1.37267 1.07709 0.94069 0.88794 1.26922 0.92880 0.93309 1.05246 1.70161 1.27112 1.08807 1.38904 0.85149 0.79495 0.78817 0.75396 1.17945 1.20120 1.17708 1.21587 0.95711 1.01736 0.82905 1.22416 0.94045 0.85645 1.00445 1.19614 1.04514 0.95770 0.91644 1.20463 0.99406 0.92374 0.98853 0.90905 0.91797 0.94346 0.91370 0.88317 0.81017 0.81897 0.73117 0.90484 0.87995 0.92793 0.87939 0.91573 0.92917 0.90487 0.86637 0.89866 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.89 71.98 0.71 -1.23 16 2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 3 C -0.09 -1.63 5.13 -19.85 -0.10 -1.73 16 4 C -0.09 -1.22 9.66 22.28 0.22 -1.01 16 5 C -0.10 -1.55 10.06 22.35 0.22 -1.32 16 6 C 0.03 0.58 7.39 22.93 0.17 0.75 16 7 O -0.18 -3.77 10.53 -3.81 -0.04 -3.81 16 8 C 0.08 1.60 9.63 67.31 0.65 2.25 16 9 C -0.25 -6.82 5.38 -18.98 -0.10 -6.92 16 10 C 0.59 18.71 7.61 86.56 0.66 19.37 16 11 O -0.57 -21.74 16.52 -4.20 -0.07 -21.81 16 12 N -0.60 -18.06 2.94 -821.40 -2.42 -20.47 16 13 C 0.11 3.31 6.61 86.56 0.57 3.88 16 14 C 0.11 4.05 6.49 86.56 0.56 4.61 16 15 N -0.64 -28.40 2.95 -822.23 -2.42 -30.83 16 16 C 0.54 30.53 7.61 86.36 0.66 31.19 16 17 O -0.63 -40.44 14.46 -4.29 -0.06 -40.50 16 18 C -0.57 -31.00 8.86 24.83 0.22 -30.78 16 19 H 0.09 4.54 5.68 -2.91 -0.02 4.52 16 20 C 0.03 1.73 5.50 85.30 0.47 2.20 16 21 N -0.82 -49.07 11.84 21.83 0.26 -48.81 16 22 Si 0.99 39.87 29.56 68.60 2.03 41.90 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 26 C 0.10 3.90 6.59 86.42 0.57 4.47 16 27 C 0.10 2.73 6.05 86.42 0.52 3.26 16 28 C -0.11 -3.05 6.39 -20.09 -0.13 -3.18 16 29 C -0.09 -2.35 9.73 22.39 0.22 -2.13 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.10 0.85 8.08 -2.39 -0.02 0.83 16 35 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.25 2.90 7.47 -2.91 -0.02 2.88 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.10 3.10 7.01 -2.39 -0.02 3.09 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.10 3.78 5.35 -2.39 -0.01 3.77 16 42 H 0.27 14.94 8.29 -92.71 -0.77 14.17 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 3.20 7.00 -2.39 -0.02 3.18 16 45 H 0.12 2.53 4.45 -2.38 -0.01 2.52 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -81.91 387.37 4.56 -77.35 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 1.01 Total: 24.20 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 6.27 Total: 22.78 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.58 Total: -100.11 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -0.17 Total: -66.12 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -81.91 4.56 -77.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294408369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.556 kcal (2) G-P(sol) polarization free energy of solvation -81.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds