Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46792 * 2 1 4 4 C 1.53002 * 109.46868 * 240.00256 * 2 1 3 5 5 O 1.45199 * 109.47393 * 119.99996 * 2 1 3 6 6 C 1.34640 * 116.99612 * 59.99895 * 5 2 1 7 7 O 1.21508 * 120.00245 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99573 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00167 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47477 * 325.00764 * 9 8 6 11 11 C 1.50695 * 109.47509 * 205.00389 * 9 8 6 12 12 O 1.21290 * 120.00211 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99890 * 180.02562 * 11 9 8 14 14 C 1.37093 * 119.99907 * 180.02562 * 13 11 9 15 15 H 1.08007 * 120.00148 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00397 * 180.02562 * 14 13 11 17 17 N 1.31421 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00585 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47268 * 89.99438 * 18 16 14 20 20 H 1.48497 * 109.47244 * 209.99993 * 18 16 14 21 21 H 1.48507 * 109.46925 * 329.99692 * 18 16 14 22 22 C 1.50704 * 109.46823 * 85.00281 * 9 8 6 23 23 C 1.38415 * 120.02998 * 225.00352 * 22 9 8 24 24 F 1.35099 * 120.00946 * 0.04035 * 23 22 9 25 25 C 1.38474 * 119.97981 * 180.02562 * 23 22 9 26 26 C 1.38210 * 120.02023 * 0.28104 * 25 23 22 27 27 C 1.38201 * 120.05118 * 359.44081 * 26 25 23 28 28 C 1.38420 * 120.02244 * 45.02256 * 22 9 8 29 29 F 1.35097 * 120.01373 * 359.95808 * 28 22 9 30 30 H 1.09002 * 109.47042 * 299.99895 * 1 2 3 31 31 H 1.08992 * 109.47334 * 60.00104 * 1 2 3 32 32 H 1.09007 * 109.46820 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47100 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47238 * 299.99941 * 3 2 1 35 35 H 1.08999 * 109.47622 * 59.99891 * 3 2 1 36 36 H 1.09007 * 109.46896 * 299.99336 * 4 2 1 37 37 H 1.08992 * 109.47437 * 59.99703 * 4 2 1 38 38 H 1.08998 * 109.46836 * 179.97438 * 4 2 1 39 39 H 0.97005 * 120.00121 * 0.02562 * 8 6 5 40 40 H 0.96998 * 119.99861 * 359.97438 * 13 11 9 41 41 H 0.96995 * 119.99817 * 180.02562 * 17 16 14 42 42 H 1.08002 * 119.98641 * 179.97438 * 25 23 22 43 43 H 1.08000 * 119.96986 * 179.70463 * 26 25 23 44 44 H 1.08002 * 119.98829 * 180.25980 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 1.6741 -4.0668 2.5831 10 1 0.6648 -4.2088 2.1970 11 6 1.7077 -4.4277 4.0459 12 8 2.0296 -3.5964 4.8684 13 7 1.3810 -5.6745 4.4401 14 6 1.4110 -6.0026 5.7708 15 1 1.6969 -5.2621 6.5033 16 6 1.0747 -7.2880 6.1772 17 7 0.7274 -8.1892 5.2860 18 14 1.1149 -7.7350 7.9905 19 1 -0.2131 -7.4633 8.5969 20 1 1.4410 -9.1762 8.1380 21 1 2.1490 -6.9206 8.6782 22 6 2.6307 -4.9511 1.8255 23 6 2.1465 -5.9847 1.0425 24 9 0.8157 -6.2008 0.9564 25 6 3.0264 -6.7969 0.3472 26 6 4.3882 -6.5794 0.4395 27 6 4.8726 -5.5442 1.2164 28 6 3.9945 -4.7306 1.9124 29 9 4.4686 -3.7219 2.6759 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 -1.7490 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1299 -0.7208 -1.2495 39 1 2.6278 -2.2368 3.0828 40 1 1.1239 -6.3393 3.7823 41 1 0.4923 -9.0864 5.5697 42 1 2.6487 -7.6037 -0.2635 43 1 5.0740 -7.2164 -0.0994 44 1 5.9368 -5.3726 1.2844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294677777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = -179.425523 kcal Electronic energy + Delta-G solvation = -33547.124262 eV Core-core repulsion = 28714.945632 eV Total energy + Delta-G solvation = -4832.178630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.77805 -48.75140 -40.67993 -39.25549 -38.09542 -37.03475 -34.72468 -34.05963 -33.83311 -31.70389 -30.88768 -30.17136 -27.47232 -27.40475 -27.24286 -24.75444 -22.90325 -22.57359 -21.79008 -20.01185 -19.50292 -18.33156 -18.05015 -17.93850 -17.08324 -16.60558 -16.28033 -15.91869 -15.78457 -15.40527 -15.36922 -15.01743 -14.97074 -14.62618 -14.47706 -14.24796 -14.19856 -13.99255 -13.75794 -13.35225 -12.82532 -12.60060 -12.57080 -12.32283 -12.25386 -11.93140 -11.89904 -11.84856 -11.67284 -11.66398 -11.59547 -11.29454 -11.27707 -11.10425 -10.46915 -10.33488 -10.32319 -9.93487 -9.65728 -9.35764 -8.94215 -8.60719 -8.38419 -8.12566 -6.53554 -3.95448 1.03497 1.10882 2.28567 3.00199 3.10725 3.21446 3.26825 3.43828 3.64719 4.02631 4.06031 4.30722 4.53829 4.61846 4.67725 4.71805 4.76940 4.81469 4.86103 4.91834 5.18037 5.21383 5.38231 5.46860 5.52888 5.61400 5.65587 5.71809 5.80548 5.81919 5.90671 5.96111 5.98323 6.03893 6.10484 6.20858 6.25559 6.27920 6.49747 6.68816 6.85892 7.44097 7.70935 7.87840 8.40328 8.59823 9.01095 9.33744 9.81205 10.62807 Molecular weight = 356.14amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.003710 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.321729 B = 7544.413562 C = 8556.967356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.570 6.570 8 N -0.681 5.681 9 C 0.197 3.803 10 H 0.119 0.881 11 C 0.432 3.568 12 O -0.580 6.580 13 N -0.539 5.539 14 C -0.305 4.305 15 H 0.108 0.892 16 C 0.028 3.972 17 N -0.890 5.890 18 Si 0.934 3.066 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.166 4.166 23 C 0.153 3.847 24 F -0.122 7.122 25 C -0.166 4.166 26 C -0.061 4.061 27 C -0.171 4.171 28 C 0.152 3.848 29 F -0.122 7.122 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.418 0.582 40 H 0.395 0.605 41 H 0.275 0.725 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 8.014 -14.372 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.407 3.593 7 O -0.460 6.460 8 N -0.341 5.341 9 C 0.089 3.911 10 H 0.136 0.864 11 C 0.216 3.784 12 O -0.466 6.466 13 N -0.173 5.173 14 C -0.434 4.434 15 H 0.125 0.875 16 C -0.176 4.176 17 N -0.529 5.529 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.170 4.170 23 C 0.133 3.867 24 F -0.100 7.100 25 C -0.185 4.185 26 C -0.079 4.079 27 C -0.190 4.190 28 C 0.132 3.868 29 F -0.100 7.100 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.257 0.743 40 H 0.229 0.771 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.118 8.207 -14.194 17.176 hybrid contribution -0.136 -0.433 0.813 0.931 sum 4.982 7.774 -13.381 16.258 Atomic orbital electron populations 1.22522 0.94045 1.05265 1.02279 1.22030 0.94402 0.91446 0.82278 1.21847 1.02201 0.92683 1.02967 1.22511 1.01453 1.03666 0.96357 1.86316 1.71547 1.23596 1.46201 1.17957 0.78740 0.80407 0.82213 1.90879 1.41326 1.70448 1.43306 1.44316 1.55107 1.10837 1.23792 1.19307 0.98041 0.78296 0.95486 0.86385 1.19263 0.86881 0.84593 0.87623 1.90537 1.54244 1.49133 1.52652 1.41745 1.57252 1.09108 1.09242 1.19762 1.43754 0.96890 0.82972 0.87458 1.25344 0.96408 0.95345 1.00456 1.69629 1.44285 1.04730 1.34305 0.85803 0.78939 0.77684 0.81581 1.20167 1.20738 1.19217 1.20131 0.94111 0.99980 1.02756 1.17115 0.78112 0.94988 0.96481 1.91552 1.30217 1.93742 1.94482 1.21143 0.93338 1.01317 1.02673 1.20790 0.94539 0.95935 0.96680 1.21136 1.00266 0.97258 1.00328 1.17145 0.90570 0.87163 0.91960 1.91531 1.88368 1.57279 1.72805 0.92139 0.91358 0.89191 0.91527 0.90323 0.91442 0.89239 0.91362 0.92296 0.74285 0.77144 0.91493 0.83900 0.84065 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.37 37.16 0.31 -1.92 16 2 C 0.14 1.68 1.13 -90.62 -0.10 1.58 16 3 C -0.14 -1.29 8.85 37.15 0.33 -0.96 16 4 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.36 -5.65 9.94 -40.32 -0.40 -6.06 16 6 C 0.65 11.60 8.01 54.05 0.43 12.03 16 7 O -0.57 -10.67 11.54 -19.28 -0.22 -10.89 16 8 N -0.68 -12.75 3.86 -61.01 -0.24 -12.99 16 9 C 0.20 3.97 2.37 -70.24 -0.17 3.81 16 10 H 0.12 2.41 6.71 -51.93 -0.35 2.07 16 11 C 0.43 10.39 7.09 -10.98 -0.08 10.31 16 12 O -0.58 -15.38 15.41 5.55 0.09 -15.30 16 13 N -0.54 -13.77 5.19 -10.96 -0.06 -13.82 16 14 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 15 H 0.11 3.05 7.16 -52.48 -0.38 2.68 16 16 C 0.03 0.73 5.50 -17.46 -0.10 0.64 16 17 N -0.89 -23.74 13.05 55.50 0.72 -23.01 16 18 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 22 C -0.17 -3.03 4.71 -104.49 -0.49 -3.52 16 23 C 0.15 2.58 7.24 -39.43 -0.29 2.30 16 24 F -0.12 -2.17 16.27 2.25 0.04 -2.13 16 25 C -0.17 -2.21 10.03 -39.50 -0.40 -2.61 16 26 C -0.06 -0.71 10.04 -39.61 -0.40 -1.11 16 27 C -0.17 -2.28 10.02 -39.51 -0.40 -2.67 16 28 C 0.15 2.57 7.01 -39.43 -0.28 2.29 16 29 F -0.12 -2.19 15.37 2.25 0.03 -2.15 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.28 5.88 -51.93 -0.31 0.98 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.42 7.94 7.27 -40.82 -0.30 7.64 16 40 H 0.39 9.88 7.78 -40.82 -0.32 9.57 16 41 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -31.09 380.09 -6.09 -37.18 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -5.31 Total: 18.09 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.45 Total: 9.83 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.43 Total: -49.82 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.54 Total: -32.25 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.07 Total: -4.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.09 -6.09 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294677777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.246 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds