Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47141 * 303.56993 * 3 2 1 5 5 N 1.46502 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99765 * 90.00080 * 5 4 3 7 7 C 1.50700 * 109.46957 * 270.00035 * 6 5 4 8 8 H 1.08002 * 119.99770 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00083 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 300.00001 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00094 * 11 9 7 15 15 C 1.34776 * 120.00331 * 270.00161 * 5 4 3 16 16 O 1.21278 * 120.00123 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99703 * 359.97438 * 15 5 4 18 18 N 1.46902 * 109.46968 * 179.97438 * 17 15 5 19 19 C 1.46848 * 110.99940 * 66.04603 * 18 17 15 20 20 C 1.53033 * 109.52415 * 174.15755 * 19 18 17 21 21 C 1.53114 * 109.27764 * 59.18533 * 20 19 18 22 22 C 1.53129 * 109.15875 * 302.34312 * 21 20 19 23 23 H 1.09000 * 109.50182 * 297.71569 * 22 21 20 24 24 C 1.50698 * 109.50423 * 177.59678 * 22 21 20 25 25 C 1.38235 * 119.61603 * 324.99985 * 24 22 21 26 26 C 1.38627 * 119.15743 * 179.97438 * 25 24 22 27 27 C 1.38671 * 118.42346 * 0.02562 * 26 25 24 28 28 C 1.38183 * 119.16321 * 0.02562 * 27 26 25 29 29 N 1.31851 * 119.62019 * 144.72461 * 24 22 21 30 30 C 1.46847 * 111.00091 * 301.83889 * 18 17 15 31 31 H 1.08997 * 109.47084 * 183.56767 * 3 2 1 32 32 H 1.09002 * 109.46616 * 63.56982 * 3 2 1 33 33 H 1.09007 * 109.47399 * 59.99819 * 4 3 2 34 34 H 1.09001 * 109.47640 * 300.00002 * 4 3 2 35 35 H 1.08994 * 109.47197 * 150.00423 * 6 5 4 36 36 H 1.08998 * 109.47414 * 30.00104 * 6 5 4 37 37 H 0.97005 * 119.99661 * 359.97438 * 10 9 7 38 38 H 1.08998 * 109.47145 * 299.99874 * 17 15 5 39 39 H 1.08996 * 109.46861 * 60.00336 * 17 15 5 40 40 H 1.08998 * 109.46779 * 294.17907 * 19 18 17 41 41 H 1.09007 * 109.45772 * 54.15302 * 19 18 17 42 42 H 1.09007 * 109.50306 * 179.11884 * 20 19 18 43 43 H 1.08998 * 109.50440 * 299.23981 * 20 19 18 44 44 H 1.08998 * 109.52835 * 62.24757 * 21 20 19 45 45 H 1.08996 * 109.52388 * 182.44255 * 21 20 19 46 46 H 1.07993 * 120.42064 * 0.02562 * 25 24 22 47 47 H 1.08003 * 120.78758 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.42153 * 180.02562 * 27 26 25 49 49 H 1.08000 * 119.62095 * 180.02562 * 28 27 26 50 50 H 1.08997 * 109.46170 * 305.85681 * 30 18 17 51 51 H 1.08996 * 109.46200 * 65.82537 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7967 1.2018 5 7 4.5834 -0.7966 1.2015 6 6 5.3159 0.2608 1.9028 7 6 5.5667 1.4088 0.9593 8 1 5.2152 1.3562 -0.0606 9 6 6.2449 2.5261 1.3980 10 7 6.6734 2.5900 2.6397 11 14 6.5552 3.9495 0.2287 12 1 7.2978 5.0212 0.9394 13 1 7.3567 3.4744 -0.9277 14 1 5.2572 4.4846 -0.2551 15 6 5.2573 -1.7691 0.5561 16 8 6.4701 -1.7687 0.5554 17 6 4.5037 -2.8570 -0.1648 18 7 5.4583 -3.7869 -0.7829 19 6 6.2246 -4.5110 0.2392 20 6 7.1009 -5.5702 -0.4333 21 6 8.0506 -4.8874 -1.4213 22 6 7.2288 -4.1008 -2.4464 23 1 6.5989 -4.7874 -3.0119 24 6 8.1574 -3.3776 -3.3875 25 6 9.3534 -2.8723 -2.9130 26 6 10.2007 -2.2092 -3.7872 27 6 9.8115 -2.0781 -5.1117 28 6 8.6004 -2.6085 -5.5133 29 7 7.8223 -3.2390 -4.6552 30 6 6.3488 -3.0842 -1.7155 31 1 2.9709 1.0265 0.0639 32 1 2.9715 -0.4566 -0.9203 33 1 2.7555 -1.8226 1.1379 34 1 2.7549 -0.3395 2.1221 35 1 6.2684 -0.1317 2.2586 36 1 4.7270 0.6097 2.7510 37 1 6.5119 1.8510 3.2470 38 1 3.8776 -3.3972 0.5453 39 1 3.8766 -2.4134 -0.9381 40 1 6.8563 -3.8097 0.7844 41 1 5.5373 -4.9955 0.9329 42 1 7.6812 -6.0969 0.3244 43 1 6.4689 -6.2799 -0.9671 44 1 8.7091 -4.2063 -0.8824 45 1 8.6467 -5.6421 -1.9343 46 1 9.6246 -2.9933 -1.8747 47 1 11.1416 -1.8044 -3.4448 48 1 10.4470 -1.5679 -5.8204 49 1 8.2902 -2.5110 -6.5432 50 1 5.7519 -2.5323 -2.4414 51 1 6.9800 -2.3896 -1.1613 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328595908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = 30.065871 kcal Electronic energy + Delta-G solvation = -32447.893944 eV Core-core repulsion = 28347.154918 eV Total energy + Delta-G solvation = -4100.739026 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64026 -39.88544 -38.05357 -36.77945 -35.40421 -34.04956 -33.13370 -32.58091 -31.89340 -30.81931 -29.37377 -28.26969 -26.25055 -24.28762 -24.01425 -23.70410 -23.25124 -22.35643 -21.52085 -19.67495 -18.78101 -17.73499 -17.07822 -16.91917 -16.52358 -16.24392 -16.01832 -15.43707 -15.29957 -14.98472 -14.69058 -14.48262 -14.21747 -14.07302 -13.82201 -13.77444 -13.44103 -13.26115 -13.19040 -12.98452 -12.65733 -12.59038 -12.45779 -12.35142 -12.01535 -11.85849 -11.72336 -11.64393 -11.42173 -11.11240 -10.88789 -10.81665 -10.70250 -10.63552 -10.46131 -10.37301 -10.18517 -9.87942 -9.81822 -9.43321 -9.25275 -8.96787 -8.48668 -7.88209 -7.85769 -6.48074 -4.21928 1.07654 1.26166 2.75776 2.88197 3.12299 3.35831 3.39205 3.54708 3.58384 3.70913 3.93935 4.21244 4.28312 4.44489 4.65529 4.79473 4.84485 4.90920 5.00097 5.02302 5.05906 5.10916 5.11759 5.15143 5.22931 5.27454 5.40667 5.47726 5.52944 5.55228 5.59923 5.65125 5.72651 5.81758 5.84803 5.92094 5.95893 6.03856 6.10164 6.14810 6.18146 6.19955 6.31101 6.51911 6.62756 6.67110 6.96731 7.06270 7.14153 7.20369 7.63542 7.90223 7.98333 8.05037 8.29455 8.65429 8.78837 9.47942 10.88977 Molecular weight = 356.20amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.003654 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.512262 B = 7660.742489 C = 9318.181171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.218 3.782 3 C -0.052 4.052 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.234 3.766 7 C -0.607 4.607 8 H 0.054 0.946 9 C 0.023 3.977 10 N -0.907 5.907 11 Si 1.065 2.935 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.287 1.287 15 C 0.477 3.523 16 O -0.530 6.530 17 C 0.031 3.969 18 N -0.512 5.512 19 C 0.039 3.961 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.031 4.031 23 H 0.092 0.908 24 C 0.142 3.858 25 C -0.163 4.163 26 C -0.074 4.074 27 C -0.182 4.182 28 C 0.097 3.903 29 N -0.483 5.483 30 C 0.046 3.954 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.022 0.978 37 H 0.268 0.732 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.153 0.847 50 H 0.068 0.932 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -14.103 -9.572 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.100 4.100 3 C -0.094 4.094 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.114 3.886 7 C -0.646 4.646 8 H 0.072 0.928 9 C -0.182 4.182 10 N -0.542 5.542 11 Si 0.893 3.107 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.213 1.213 15 C 0.263 3.737 16 O -0.408 6.408 17 C -0.101 4.101 18 N -0.235 5.235 19 C -0.089 4.089 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.050 4.050 23 H 0.110 0.890 24 C 0.004 3.996 25 C -0.183 4.183 26 C -0.100 4.100 27 C -0.202 4.202 28 C -0.060 4.060 29 N -0.192 5.192 30 C -0.082 4.082 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.155 0.845 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.170 0.830 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.031 -13.293 -10.222 16.801 hybrid contribution 0.940 -0.250 0.682 1.188 sum 1.971 -13.543 -9.540 16.683 Atomic orbital electron populations 1.81190 1.13057 1.09521 1.08947 1.29225 0.95176 0.92656 0.92905 1.19955 0.80910 1.06697 1.01789 1.21274 0.81773 0.99647 0.97639 1.48209 1.04983 1.26945 1.52209 1.19398 0.92033 0.84920 0.92226 1.22196 1.41085 1.02621 0.98663 0.92822 1.25730 0.93296 1.00488 0.98686 1.70813 1.43701 1.34700 1.05012 0.83585 0.76602 0.75682 0.74810 1.20675 1.21438 1.21321 1.21758 0.88724 0.83401 0.79784 1.90571 1.13910 1.76180 1.60144 1.22382 0.96045 0.92579 0.99063 1.62374 1.18506 1.25709 1.16899 1.22286 0.96682 0.96278 0.93675 1.21511 0.97391 0.97648 0.98260 1.21699 0.97825 0.99060 0.96652 1.20040 0.94768 0.96527 0.93710 0.89007 1.21180 0.92952 0.94588 0.90855 1.22089 0.95449 0.99347 1.01409 1.21613 0.99448 0.95589 0.93334 1.22109 0.98689 1.02372 0.97014 1.22709 0.90704 0.93433 0.99148 1.67489 1.33573 1.15067 1.03061 1.22380 0.95509 0.95397 0.94901 0.85215 0.87710 0.90610 0.89614 0.94801 0.95999 0.92165 0.88217 0.88163 0.91730 0.91447 0.91499 0.91391 0.91333 0.91944 0.84488 0.84906 0.85035 0.82967 0.91378 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.98 18.54 42.15 0.78 -6.20 16 2 C 0.22 2.88 15.43 -20.76 -0.32 2.56 16 3 C -0.05 -0.64 6.03 -29.52 -0.18 -0.82 16 4 C 0.12 1.59 5.21 -4.05 -0.02 1.56 16 5 N -0.59 -10.33 2.46 -175.06 -0.43 -10.76 16 6 C 0.23 5.31 4.52 -5.19 -0.02 5.29 16 7 C -0.61 -15.37 8.92 -34.44 -0.31 -15.67 16 8 H 0.05 1.34 7.42 -52.49 -0.39 0.95 16 9 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 10 N -0.91 -26.00 13.65 55.43 0.76 -25.25 16 11 Si 1.07 24.08 29.90 -169.99 -5.08 19.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 15 C 0.48 8.20 7.09 -10.98 -0.08 8.13 16 16 O -0.53 -11.12 11.20 5.56 0.06 -11.06 16 17 C 0.03 0.40 4.41 -4.97 -0.02 0.38 16 18 N -0.51 -6.81 4.86 -236.12 -1.15 -7.96 16 19 C 0.04 0.49 5.09 -3.84 -0.02 0.47 16 20 C -0.11 -1.17 6.09 -26.65 -0.16 -1.34 16 21 C -0.11 -1.29 4.78 -26.61 -0.13 -1.42 16 22 C -0.03 -0.40 2.67 -91.69 -0.24 -0.64 16 23 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 24 C 0.14 1.93 5.79 -82.59 -0.48 1.45 16 25 C -0.16 -2.07 9.18 -39.44 -0.36 -2.43 16 26 C -0.07 -0.82 10.18 -39.28 -0.40 -1.22 16 27 C -0.18 -1.88 10.11 -39.44 -0.40 -2.28 16 28 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 29 N -0.48 -6.68 10.27 -9.47 -0.10 -6.78 16 30 C 0.05 0.68 4.24 -3.83 -0.02 0.66 16 31 H 0.13 1.87 7.26 -51.93 -0.38 1.49 16 32 H 0.10 1.14 7.22 -51.93 -0.38 0.77 16 33 H 0.08 0.75 6.44 -51.92 -0.33 0.42 16 34 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 35 H 0.03 0.88 7.29 -51.93 -0.38 0.50 16 36 H 0.02 0.51 7.76 -51.93 -0.40 0.10 16 37 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 38 H 0.10 1.05 7.32 -51.93 -0.38 0.67 16 39 H 0.10 1.14 7.19 -51.93 -0.37 0.77 16 40 H 0.06 1.01 6.00 -51.93 -0.31 0.70 16 41 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.14 1.65 6.26 -52.49 -0.33 1.32 16 47 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 50 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 51 H 0.08 1.52 5.36 -51.93 -0.28 1.24 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -32.42 408.53 -10.01 -42.44 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.56 Total: 4.29 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.45 Total: -3.89 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.14 Total: -56.94 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.06 Total: -11.06 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 19.00 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.42 -10.01 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328595908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.502 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds