Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47141 * 303.56993 * 3 2 1 5 5 N 1.46502 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99765 * 90.00080 * 5 4 3 7 7 C 1.50700 * 109.46957 * 270.00035 * 6 5 4 8 8 H 1.08002 * 119.99770 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00083 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 300.00001 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00094 * 11 9 7 15 15 C 1.34776 * 120.00331 * 270.00161 * 5 4 3 16 16 O 1.21278 * 120.00123 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99703 * 359.97438 * 15 5 4 18 18 N 1.46902 * 109.46968 * 179.97438 * 17 15 5 19 19 C 1.46848 * 110.99940 * 66.04603 * 18 17 15 20 20 C 1.53033 * 109.52415 * 174.15755 * 19 18 17 21 21 C 1.53114 * 109.27764 * 59.18533 * 20 19 18 22 22 C 1.53129 * 109.15875 * 302.34312 * 21 20 19 23 23 H 1.09000 * 109.50182 * 297.71569 * 22 21 20 24 24 C 1.50698 * 109.50423 * 177.59678 * 22 21 20 25 25 C 1.38235 * 119.61603 * 324.99985 * 24 22 21 26 26 C 1.38627 * 119.15743 * 179.97438 * 25 24 22 27 27 C 1.38671 * 118.42346 * 0.02562 * 26 25 24 28 28 C 1.38183 * 119.16321 * 0.02562 * 27 26 25 29 29 N 1.31851 * 119.62019 * 144.72461 * 24 22 21 30 30 C 1.46847 * 111.00091 * 301.83889 * 18 17 15 31 31 H 1.08997 * 109.47084 * 183.56767 * 3 2 1 32 32 H 1.09002 * 109.46616 * 63.56982 * 3 2 1 33 33 H 1.09007 * 109.47399 * 59.99819 * 4 3 2 34 34 H 1.09001 * 109.47640 * 300.00002 * 4 3 2 35 35 H 1.08994 * 109.47197 * 150.00423 * 6 5 4 36 36 H 1.08998 * 109.47414 * 30.00104 * 6 5 4 37 37 H 0.97005 * 119.99661 * 359.97438 * 10 9 7 38 38 H 1.08998 * 109.47145 * 299.99874 * 17 15 5 39 39 H 1.08996 * 109.46861 * 60.00336 * 17 15 5 40 40 H 1.08998 * 109.46779 * 294.17907 * 19 18 17 41 41 H 1.09007 * 109.45772 * 54.15302 * 19 18 17 42 42 H 1.09007 * 109.50306 * 179.11884 * 20 19 18 43 43 H 1.08998 * 109.50440 * 299.23981 * 20 19 18 44 44 H 1.08998 * 109.52835 * 62.24757 * 21 20 19 45 45 H 1.08996 * 109.52388 * 182.44255 * 21 20 19 46 46 H 1.07993 * 120.42064 * 0.02562 * 25 24 22 47 47 H 1.08003 * 120.78758 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.42153 * 180.02562 * 27 26 25 49 49 H 1.08000 * 119.62095 * 180.02562 * 28 27 26 50 50 H 1.08997 * 109.46170 * 305.85681 * 30 18 17 51 51 H 1.08996 * 109.46200 * 65.82537 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7967 1.2018 5 7 4.5834 -0.7966 1.2015 6 6 5.3159 0.2608 1.9028 7 6 5.5667 1.4088 0.9593 8 1 5.2152 1.3562 -0.0606 9 6 6.2449 2.5261 1.3980 10 7 6.6734 2.5900 2.6397 11 14 6.5552 3.9495 0.2287 12 1 7.2978 5.0212 0.9394 13 1 7.3567 3.4744 -0.9277 14 1 5.2572 4.4846 -0.2551 15 6 5.2573 -1.7691 0.5561 16 8 6.4701 -1.7687 0.5554 17 6 4.5037 -2.8570 -0.1648 18 7 5.4583 -3.7869 -0.7829 19 6 6.2246 -4.5110 0.2392 20 6 7.1009 -5.5702 -0.4333 21 6 8.0506 -4.8874 -1.4213 22 6 7.2288 -4.1008 -2.4464 23 1 6.5989 -4.7874 -3.0119 24 6 8.1574 -3.3776 -3.3875 25 6 9.3534 -2.8723 -2.9130 26 6 10.2007 -2.2092 -3.7872 27 6 9.8115 -2.0781 -5.1117 28 6 8.6004 -2.6085 -5.5133 29 7 7.8223 -3.2390 -4.6552 30 6 6.3488 -3.0842 -1.7155 31 1 2.9709 1.0265 0.0639 32 1 2.9715 -0.4566 -0.9203 33 1 2.7555 -1.8226 1.1379 34 1 2.7549 -0.3395 2.1221 35 1 6.2684 -0.1317 2.2586 36 1 4.7270 0.6097 2.7510 37 1 6.5119 1.8510 3.2470 38 1 3.8776 -3.3972 0.5453 39 1 3.8766 -2.4134 -0.9381 40 1 6.8563 -3.8097 0.7844 41 1 5.5373 -4.9955 0.9329 42 1 7.6812 -6.0969 0.3244 43 1 6.4689 -6.2799 -0.9671 44 1 8.7091 -4.2063 -0.8824 45 1 8.6467 -5.6421 -1.9343 46 1 9.6246 -2.9933 -1.8747 47 1 11.1416 -1.8044 -3.4448 48 1 10.4470 -1.5679 -5.8204 49 1 8.2902 -2.5110 -6.5432 50 1 5.7519 -2.5323 -2.4414 51 1 6.9800 -2.3896 -1.1613 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328595908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = 10.199747 kcal Electronic energy + Delta-G solvation = -32448.755404 eV Core-core repulsion = 28347.154918 eV Total energy + Delta-G solvation = -4101.600486 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70382 -41.02296 -39.18312 -37.95722 -36.79072 -35.26042 -34.86498 -33.49166 -32.84906 -32.11174 -30.38693 -29.66964 -27.73919 -25.30182 -25.19697 -25.02043 -24.47586 -23.60068 -22.50620 -20.72493 -20.09429 -19.26066 -18.40300 -17.97738 -17.83628 -17.26496 -17.11718 -16.48284 -16.44282 -16.09434 -15.82971 -15.69768 -15.58719 -15.28396 -15.22071 -14.84586 -14.68362 -14.54060 -14.27849 -14.02755 -13.80378 -13.73213 -13.59032 -13.42386 -13.37804 -13.30843 -12.96226 -12.73712 -12.68430 -12.59826 -12.47358 -12.01586 -11.95405 -11.87331 -11.66583 -11.41147 -11.37779 -11.15789 -11.08782 -10.79555 -10.54570 -10.36092 -9.87655 -9.48525 -9.09297 -8.59109 -6.34760 0.17682 0.36397 1.52091 1.59113 1.60671 1.76957 1.80579 1.85895 2.23575 2.56840 2.74599 2.95822 3.09167 3.18705 3.35796 3.72193 3.73532 3.92066 3.99845 4.02420 4.09182 4.11890 4.14350 4.18105 4.24991 4.26793 4.42226 4.51267 4.54944 4.57305 4.61402 4.73197 4.76736 4.81410 4.83668 4.90727 4.95800 4.99643 5.03561 5.06369 5.10288 5.16090 5.23284 5.28850 5.30395 5.50433 5.61708 5.80181 5.90755 5.94833 6.05711 6.24642 6.54207 6.57229 6.68440 7.06578 7.35056 7.47506 8.75914 Molecular weight = 356.20amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.003654 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.512262 B = 7660.742489 C = 9318.181171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.246 3.754 3 C -0.041 4.041 4 C 0.118 3.882 5 N -0.595 5.595 6 C 0.247 3.753 7 C -0.601 4.601 8 H 0.057 0.943 9 C -0.030 4.030 10 N -0.938 5.938 11 Si 1.106 2.894 12 H -0.288 1.288 13 H -0.282 1.282 14 H -0.261 1.261 15 C 0.471 3.529 16 O -0.574 6.574 17 C 0.037 3.963 18 N -0.504 5.504 19 C 0.038 3.962 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.023 4.023 23 H 0.091 0.909 24 C 0.123 3.877 25 C -0.182 4.182 26 C -0.082 4.082 27 C -0.177 4.177 28 C 0.086 3.914 29 N -0.508 5.508 30 C 0.056 3.944 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.085 0.915 35 H -0.008 1.008 36 H 0.018 0.982 37 H 0.256 0.744 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.030 0.970 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.154 0.846 48 H 0.165 0.835 49 H 0.180 0.820 50 H 0.057 0.943 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -15.267 -11.684 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.071 4.071 3 C -0.082 4.082 4 C -0.006 4.006 5 N -0.326 5.326 6 C 0.125 3.875 7 C -0.640 4.640 8 H 0.075 0.925 9 C -0.228 4.228 10 N -0.576 5.576 11 Si 0.929 3.071 12 H -0.214 1.214 13 H -0.208 1.208 14 H -0.186 1.186 15 C 0.259 3.741 16 O -0.454 6.454 17 C -0.094 4.094 18 N -0.226 5.226 19 C -0.089 4.089 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.043 4.043 23 H 0.109 0.891 24 C -0.014 4.014 25 C -0.201 4.201 26 C -0.108 4.108 27 C -0.196 4.196 28 C -0.071 4.071 29 N -0.217 5.217 30 C -0.072 4.072 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.010 0.990 36 H 0.036 0.964 37 H 0.065 0.935 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.150 0.850 47 H 0.172 0.828 48 H 0.182 0.818 49 H 0.197 0.803 50 H 0.076 0.924 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.004 -14.490 -12.344 19.035 hybrid contribution 1.298 0.090 1.311 1.847 sum 1.294 -14.400 -11.033 18.187 Atomic orbital electron populations 1.81235 1.14089 1.10697 1.10269 1.29102 0.94812 0.91501 0.91676 1.19834 0.80200 1.05678 1.02513 1.21552 0.78793 1.02305 0.97959 1.48150 1.06788 1.25760 1.51855 1.18879 0.90892 0.85585 0.92113 1.22516 1.39554 1.02905 0.98997 0.92510 1.27027 0.93238 1.03372 0.99187 1.70923 1.45944 1.34670 1.06041 0.83058 0.77652 0.73164 0.73242 1.21353 1.20833 1.18553 1.22702 0.88481 0.83794 0.79102 1.90584 1.16218 1.77142 1.61452 1.22605 0.95783 0.91226 0.99810 1.62468 1.18209 1.25119 1.16754 1.22323 0.96864 0.96011 0.93737 1.21512 0.97218 0.97135 0.98399 1.21664 0.97775 0.98933 0.96446 1.19961 0.94615 0.95980 0.93731 0.89082 1.21284 0.93464 0.95504 0.91191 1.22195 0.95957 1.00319 1.01667 1.21973 1.00023 0.95075 0.93730 1.22484 0.98568 1.01413 0.97126 1.23273 0.90939 0.92768 1.00074 1.67490 1.34660 1.16211 1.03384 1.22172 0.95154 0.95383 0.94534 0.87121 0.85600 0.86474 0.89609 0.98983 0.96414 0.93461 0.84817 0.85918 0.95147 0.89543 0.89983 0.90104 0.92825 0.90591 0.84974 0.82842 0.81758 0.80256 0.92403 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.12 18.54 20.01 0.37 -13.75 16 2 C 0.25 5.93 15.43 89.44 1.38 7.31 16 3 C -0.04 -0.92 6.03 28.79 0.17 -0.74 16 4 C 0.12 2.79 5.21 86.38 0.45 3.24 16 5 N -0.59 -20.51 2.46 -826.15 -2.03 -22.54 16 6 C 0.25 11.60 4.52 85.63 0.39 11.99 16 7 C -0.60 -30.92 8.92 25.60 0.23 -30.69 16 8 H 0.06 2.83 7.42 -2.91 -0.02 2.81 16 9 C -0.03 -1.62 5.46 84.65 0.46 -1.16 16 10 N -0.94 -55.57 13.65 21.45 0.29 -55.27 16 11 Si 1.11 48.60 29.90 68.60 2.05 50.65 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 15 C 0.47 16.05 7.09 87.66 0.62 16.67 16 16 O -0.57 -25.07 11.20 -3.02 -0.03 -25.10 16 17 C 0.04 0.86 4.41 85.56 0.38 1.24 16 18 N -0.50 -12.67 4.86 -900.93 -4.38 -17.05 16 19 C 0.04 0.93 5.09 86.32 0.44 1.37 16 20 C -0.10 -2.09 6.09 30.64 0.19 -1.90 16 21 C -0.11 -2.47 4.78 30.68 0.15 -2.32 16 22 C -0.02 -0.60 2.67 -11.49 -0.03 -0.63 16 23 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 24 C 0.12 3.37 5.79 42.55 0.25 3.61 16 25 C -0.18 -4.71 9.18 22.36 0.21 -4.50 16 26 C -0.08 -1.76 10.18 22.47 0.23 -1.53 16 27 C -0.18 -3.29 10.11 22.36 0.23 -3.07 16 28 C 0.09 1.83 11.18 84.67 0.95 2.78 16 29 N -0.51 -13.78 10.27 -183.88 -1.89 -15.67 16 30 C 0.06 1.66 4.24 86.33 0.37 2.02 16 31 H 0.11 3.03 7.26 -2.39 -0.02 3.01 16 32 H 0.13 2.34 7.22 -2.39 -0.02 2.32 16 33 H 0.12 1.84 6.44 -2.38 -0.02 1.83 16 34 H 0.09 2.06 7.89 -2.39 -0.02 2.04 16 35 H -0.01 -0.43 7.29 -2.39 -0.02 -0.45 16 36 H 0.02 0.85 7.76 -2.39 -0.02 0.83 16 37 H 0.26 15.27 7.22 -92.70 -0.67 14.60 16 38 H 0.13 2.24 7.32 -2.39 -0.02 2.22 16 39 H 0.12 2.34 7.19 -2.39 -0.02 2.32 16 40 H 0.03 0.97 6.00 -2.39 -0.01 0.96 16 41 H 0.09 1.77 8.06 -2.38 -0.02 1.75 16 42 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.36 6.37 -2.39 -0.02 1.34 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.13 3.41 6.26 -2.91 -0.02 3.39 16 47 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 48 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 49 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 50 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 51 H 0.05 1.83 5.36 -2.39 -0.01 1.81 16 Total: -1.00 -74.55 408.53 2.47 -72.08 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.04 Total: 22.96 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 7.04 Total: 3.68 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -7.63 Total: -124.28 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.03 Total: -25.10 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.65 kcal Total: -74.55 2.47 -72.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328595908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.283 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds