Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47078 * 240.00351 * 2 1 3 5 5 O 1.45199 * 109.47318 * 120.00461 * 2 1 3 6 6 C 1.34635 * 117.00292 * 59.99703 * 5 2 1 7 7 O 1.21512 * 119.99875 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00191 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00130 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46739 * 325.00517 * 9 8 6 11 11 C 1.52999 * 109.47288 * 205.00359 * 9 8 6 12 12 C 1.52998 * 109.47039 * 64.81220 * 11 9 8 13 13 C 1.50701 * 109.47330 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99804 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00254 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99447 * 179.97438 * 15 13 12 17 17 Si 1.86790 * 120.00035 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47300 * 89.99849 * 17 15 13 19 19 H 1.48496 * 109.47525 * 210.00151 * 17 15 13 20 20 H 1.48500 * 109.47288 * 330.00112 * 17 15 13 21 21 C 1.50696 * 109.46799 * 85.00294 * 9 8 6 22 22 O 1.21278 * 120.00232 * 20.37166 * 21 9 8 23 23 N 1.34787 * 120.00080 * 200.37042 * 21 9 8 24 24 C 1.47516 * 118.75212 * 354.88055 * 23 21 9 25 25 C 1.53573 * 111.02425 * 138.34824 * 24 23 21 26 26 C 1.51534 * 109.58486 * 320.02313 * 25 24 23 27 27 O 1.42156 * 108.75839 * 91.39872 * 26 25 24 28 28 C 1.38019 * 119.43580 * 272.77375 * 27 26 25 29 29 C 1.45116 * 118.76061 * 174.86154 * 23 21 9 30 30 H 1.09001 * 109.47371 * 299.99465 * 1 2 3 31 31 H 1.08993 * 109.47552 * 59.99929 * 1 2 3 32 32 H 1.09004 * 109.47381 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47176 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47505 * 300.00079 * 3 2 1 35 35 H 1.08994 * 109.46883 * 60.00282 * 3 2 1 36 36 H 1.09004 * 109.46900 * 300.00155 * 4 2 1 37 37 H 1.09007 * 109.47018 * 59.99443 * 4 2 1 38 38 H 1.08995 * 109.47288 * 179.97438 * 4 2 1 39 39 H 0.97004 * 119.99484 * 0.02562 * 8 6 5 40 40 H 1.08993 * 109.47321 * 184.80954 * 11 9 8 41 41 H 1.09000 * 109.46844 * 304.81490 * 11 9 8 42 42 H 1.09002 * 109.46977 * 300.00142 * 12 11 9 43 43 H 1.08999 * 109.47394 * 59.99966 * 12 11 9 44 44 H 0.97009 * 119.99727 * 179.97438 * 16 15 13 45 45 H 1.08997 * 109.16777 * 258.74700 * 24 23 21 46 46 H 1.09000 * 109.16612 * 17.95111 * 24 23 21 47 47 H 1.08994 * 109.44976 * 199.98671 * 25 24 23 48 48 H 1.09003 * 109.44828 * 80.05779 * 25 24 23 49 49 H 1.08999 * 109.58980 * 331.61616 * 26 25 24 50 50 H 1.09003 * 109.58851 * 211.17999 * 26 25 24 51 51 H 1.08999 * 109.46546 * 183.43275 * 28 27 26 52 52 H 1.08994 * 109.47021 * 303.41949 * 28 27 26 53 53 H 1.08994 * 109.46091 * 149.28732 * 29 23 21 54 54 H 1.08995 * 109.44737 * 29.31781 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6749 -4.0673 2.5824 10 1 0.6658 -4.2097 2.1958 11 6 1.7086 -4.4341 4.0674 12 6 0.6514 -3.6214 4.8176 13 6 0.6850 -3.9821 6.2804 14 1 1.3896 -4.7179 6.6390 15 6 -0.1838 -3.3730 7.1608 16 7 -0.1547 -3.6883 8.4372 17 14 -1.4020 -2.1000 6.5406 18 1 -2.6655 -2.7741 6.1478 19 1 -1.6801 -1.1154 7.6168 20 1 -0.8288 -1.3984 5.3640 21 6 2.6325 -4.9506 1.8249 22 8 3.7314 -4.5355 1.5236 23 7 2.2676 -6.2021 1.4823 24 6 0.9714 -6.7193 1.9603 25 6 0.2492 -7.5027 0.8544 26 6 0.4319 -6.7939 -0.4724 27 8 1.5883 -7.3155 -1.1139 28 6 2.8237 -6.7663 -0.8366 29 6 3.1645 -6.9896 0.6569 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6765 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 2.6278 -2.2369 3.0827 40 1 1.4995 -5.4974 4.1839 41 1 2.6948 -4.2109 4.4745 42 1 0.8605 -2.5579 4.7011 43 1 -0.3348 -3.8444 4.4105 44 1 -0.7657 -3.2595 9.0568 45 1 1.1409 -7.3772 2.8127 46 1 0.3460 -5.8832 2.2734 47 1 -0.8134 -7.5658 1.0890 48 1 0.6666 -8.5076 0.7897 49 1 0.5597 -5.7251 -0.3012 50 1 -0.4425 -6.9636 -1.1008 51 1 3.5814 -7.2442 -1.4575 52 1 2.8019 -5.6973 -1.0484 53 1 3.0500 -8.0456 0.9015 54 1 4.1935 -6.6829 0.8443 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497058455.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = -183.739697 kcal Electronic energy + Delta-G solvation = -35098.798101 eV Core-core repulsion = 30649.186099 eV Total energy + Delta-G solvation = -4449.612002 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 356.219 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.21917 -41.47911 -39.80958 -38.41574 -36.96395 -36.54843 -35.34031 -34.83348 -33.81044 -33.08085 -30.68430 -28.94205 -28.38303 -28.31481 -27.51725 -25.92320 -24.26298 -23.21561 -22.52341 -22.10392 -21.14882 -20.25081 -19.41968 -19.10910 -18.37942 -18.05151 -17.60404 -17.42656 -17.12812 -17.07857 -16.40922 -16.28194 -16.01509 -15.73766 -15.49053 -15.29435 -14.95828 -14.78201 -14.63658 -14.57292 -14.41227 -13.90416 -13.70626 -13.47562 -13.37491 -13.18637 -13.04502 -12.93532 -12.89911 -12.88615 -12.72387 -12.58459 -12.46067 -12.35292 -12.17101 -12.03915 -11.84785 -11.75441 -11.60038 -11.43236 -11.37703 -11.26675 -11.16028 -10.75499 -10.67787 -10.15949 -9.70987 -8.27915 -6.31478 1.00721 1.35570 1.38816 1.41595 1.48703 1.61422 1.97306 2.35834 2.77099 3.07904 3.09473 3.29423 3.69074 3.73539 3.74451 3.78124 3.83535 3.92723 3.92860 4.08318 4.17208 4.18646 4.35707 4.40955 4.47812 4.52950 4.59557 4.60533 4.67104 4.72311 4.73970 4.74171 4.75265 4.81960 4.85490 4.88647 4.92132 4.98335 5.06471 5.13103 5.15159 5.26423 5.32476 5.34662 5.44639 5.50002 5.53232 5.63416 6.09580 6.26895 6.28765 6.55630 6.76595 6.96852 7.24115 7.33213 8.88427 Molecular weight = 356.22amu Principal moments of inertia in cm(-1) A = 0.006425 B = 0.004830 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4356.752469 B = 5796.223227 C = 8912.697769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.121 3.879 3 C -0.135 4.135 4 C -0.176 4.176 5 O -0.371 6.371 6 C 0.653 3.347 7 O -0.587 6.587 8 N -0.686 5.686 9 C 0.153 3.847 10 H 0.116 0.884 11 C -0.094 4.094 12 C -0.003 4.003 13 C -0.525 4.525 14 H 0.040 0.960 15 C 0.013 3.987 16 N -0.948 5.948 17 Si 0.939 3.061 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.252 1.252 21 C 0.503 3.497 22 O -0.567 6.567 23 N -0.603 5.603 24 C 0.088 3.912 25 C -0.155 4.155 26 C 0.068 3.932 27 O -0.396 6.396 28 C 0.068 3.932 29 C 0.073 3.927 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.024 0.976 44 H 0.265 0.735 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.033 0.967 50 H 0.108 0.892 51 H 0.126 0.874 52 H 0.015 0.985 53 H 0.106 0.894 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -0.156 -21.928 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 C -0.192 4.192 4 C -0.233 4.233 5 O -0.286 6.286 6 C 0.407 3.593 7 O -0.478 6.478 8 N -0.344 5.344 9 C 0.045 3.955 10 H 0.133 0.867 11 C -0.132 4.132 12 C -0.041 4.041 13 C -0.563 4.563 14 H 0.058 0.942 15 C -0.185 4.185 16 N -0.588 5.588 17 Si 0.764 3.236 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.176 1.176 21 C 0.290 3.710 22 O -0.446 6.446 23 N -0.336 5.336 24 C -0.033 4.033 25 C -0.193 4.193 26 C -0.008 4.008 27 O -0.314 6.314 28 C -0.010 4.010 29 C -0.050 4.050 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.251 0.749 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.130 0.870 48 H 0.108 0.892 49 H 0.052 0.948 50 H 0.126 0.874 51 H 0.144 0.856 52 H 0.033 0.967 53 H 0.124 0.876 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.362 -0.255 -22.502 22.545 hybrid contribution -0.087 0.898 1.031 1.370 sum 1.276 0.643 -21.471 21.519 Atomic orbital electron populations 1.22474 0.93737 1.03795 1.03631 1.22493 0.94840 0.92799 0.81332 1.21890 1.02356 0.90533 1.04448 1.22436 1.01282 1.02069 0.97485 1.86326 1.71533 1.22926 1.47775 1.18107 0.78426 0.80930 0.81817 1.90839 1.42330 1.71065 1.43596 1.44418 1.55176 1.11082 1.23722 1.21046 0.98104 0.78720 0.97610 0.86677 1.21626 1.01003 1.02076 0.88477 1.19464 0.94971 0.96025 0.93629 1.21363 1.18924 1.23324 0.92735 0.94195 1.25843 0.99172 0.98701 0.94748 1.70049 1.39681 1.45014 1.04086 0.85821 0.79799 0.79427 0.78597 1.18969 1.21380 1.17597 1.21337 0.87784 0.82887 0.78995 1.90632 1.23254 1.74135 1.56570 1.47977 1.20825 1.13606 1.51164 1.22423 0.82728 1.00105 0.98031 1.22423 1.02933 1.00333 0.93585 1.22364 0.87665 0.96543 0.94265 1.86247 1.14529 1.61836 1.68806 1.22490 0.86218 0.97029 0.95306 1.22471 0.94614 0.96995 0.90925 0.92308 0.88544 0.91885 0.91381 0.87410 0.91377 0.92319 0.88532 0.92546 0.74882 0.88916 0.91739 0.96129 0.95757 0.92555 0.89282 0.89582 0.86958 0.89178 0.94826 0.87400 0.85630 0.96689 0.87551 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 8.37 71.98 0.60 -3.53 16 2 C 0.12 2.91 1.13 -10.79 -0.01 2.90 16 3 C -0.14 -2.30 8.85 71.98 0.64 -1.66 16 4 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 5 O -0.37 -11.51 9.94 -55.45 -0.55 -12.06 16 6 C 0.65 22.40 8.01 129.79 1.04 23.44 16 7 O -0.59 -21.10 11.54 19.80 0.23 -20.87 16 8 N -0.69 -23.07 4.10 -573.74 -2.35 -25.42 16 9 C 0.15 4.92 1.51 44.24 0.07 4.99 16 10 H 0.12 3.62 5.90 -2.39 -0.01 3.61 16 11 C -0.09 -3.27 4.43 30.59 0.14 -3.14 16 12 C 0.00 -0.15 3.93 29.85 0.12 -0.03 16 13 C -0.53 -28.21 9.66 25.60 0.25 -27.96 16 14 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 15 C 0.01 0.71 5.47 84.66 0.46 1.17 16 16 N -0.95 -57.37 13.96 21.45 0.30 -57.07 16 17 Si 0.94 42.77 27.47 68.60 1.88 44.66 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 21 C 0.50 16.26 6.84 87.65 0.60 16.86 16 22 O -0.57 -21.70 15.96 -3.02 -0.05 -21.75 16 23 N -0.60 -15.52 2.19 -817.97 -1.79 -17.31 16 24 C 0.09 1.84 5.01 86.38 0.43 2.27 16 25 C -0.15 -2.52 5.78 30.31 0.18 -2.35 16 26 C 0.07 1.36 6.37 71.50 0.46 1.82 16 27 O -0.40 -8.85 9.86 -117.91 -1.16 -10.01 16 28 C 0.07 1.51 6.82 72.60 0.49 2.01 16 29 C 0.07 1.64 5.60 87.25 0.49 2.13 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.80 5.88 -2.39 -0.01 1.79 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.41 13.42 8.71 -92.71 -0.81 12.61 16 40 H 0.09 3.01 6.91 -2.39 -0.02 2.99 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.02 0.88 6.80 -2.39 -0.02 0.87 16 43 H 0.02 0.99 7.57 -2.39 -0.02 0.98 16 44 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 45 H 0.09 1.67 8.11 -2.39 -0.02 1.65 16 46 H 0.09 1.91 5.17 -2.39 -0.01 1.90 16 47 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.09 1.35 8.01 -2.39 -0.02 1.33 16 49 H 0.03 0.85 7.40 -2.39 -0.02 0.84 16 50 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 53 H 0.11 1.90 8.11 -2.39 -0.02 1.89 16 54 H 0.08 2.03 7.21 -2.39 -0.02 2.01 16 Total: -1.00 -72.76 417.61 3.08 -69.68 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.03 Total: 34.71 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.55 Total: 15.45 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.85 Total: -99.80 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -1.53 Total: -64.69 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.66 kcal Total: -72.76 3.08 -69.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497058455.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.061 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds