Wall clock time and date at job start Tue Mar 31 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 C 1.53002 * 109.47373 * 175.64539 * 3 2 1 5 5 C 1.52998 * 109.47151 * 294.12481 * 4 3 2 6 6 N 1.46503 * 109.46913 * 295.64594 * 3 2 1 7 7 N 1.39934 * 125.75198 * 299.99551 * 6 3 2 8 8 C 1.30449 * 108.89000 * 179.73945 * 7 6 3 9 9 C 1.41286 * 108.02660 * 0.41011 * 8 7 6 10 10 C 1.47429 * 126.41458 * 179.85828 * 9 8 7 11 11 O 1.21601 * 120.00031 * 179.69186 * 10 9 8 12 12 N 1.34779 * 120.00021 * 359.68271 * 10 9 8 13 13 C 1.46501 * 119.99706 * 180.27739 * 12 10 9 14 14 H 1.08996 * 109.47517 * 34.73038 * 13 12 10 15 15 C 1.50693 * 109.47129 * 274.72530 * 13 12 10 16 16 H 1.08005 * 120.00247 * 333.50774 * 15 13 12 17 17 C 1.37882 * 120.00159 * 153.51144 * 15 13 12 18 18 N 1.31519 * 119.99695 * 4.88117 * 17 15 13 19 19 Si 1.86795 * 120.00117 * 184.87572 * 17 15 13 20 20 H 1.48496 * 109.47396 * 60.00323 * 19 17 15 21 21 H 1.48509 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 299.99777 * 19 17 15 23 23 C 1.50703 * 109.46770 * 154.72531 * 13 12 10 24 24 C 1.38238 * 119.99994 * 46.86784 * 23 13 12 25 25 C 1.38234 * 120.00123 * 179.79013 * 24 23 13 26 26 C 1.38237 * 119.99873 * 0.43383 * 25 24 23 27 27 C 1.38239 * 119.99965 * 359.81733 * 26 25 24 28 28 C 1.38233 * 120.00135 * 227.13295 * 23 13 12 29 29 C 1.34255 * 125.75353 * 119.99930 * 6 3 2 30 30 C 1.50700 * 126.29176 * 359.97438 * 29 6 3 31 31 H 1.08996 * 109.47312 * 65.13645 * 1 2 3 32 32 H 1.08997 * 109.46824 * 185.14056 * 1 2 3 33 33 H 1.09008 * 109.46785 * 305.13732 * 1 2 3 34 34 H 1.08998 * 109.47308 * 240.00221 * 2 1 3 35 35 H 1.08999 * 109.47346 * 119.99958 * 2 1 3 36 36 H 1.08997 * 109.46738 * 55.64494 * 3 2 1 37 37 H 1.09003 * 109.47016 * 54.12350 * 4 3 2 38 38 H 1.08989 * 109.47137 * 174.12441 * 4 3 2 39 39 H 1.09007 * 109.47090 * 297.10525 * 5 4 3 40 40 H 1.09002 * 109.47447 * 57.10078 * 5 4 3 41 41 H 1.08998 * 109.47729 * 177.10200 * 5 4 3 42 42 H 1.08005 * 125.98418 * 180.26857 * 8 7 6 43 43 H 0.97000 * 119.99876 * 0.02562 * 12 10 9 44 44 H 0.96991 * 119.99888 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.99906 * 359.97438 * 24 23 13 46 46 H 1.07994 * 120.00479 * 180.27120 * 25 24 23 47 47 H 1.07999 * 120.00310 * 179.83988 * 26 25 24 48 48 H 1.07995 * 120.00072 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00209 * 359.97438 * 28 23 13 50 50 H 1.09004 * 109.47378 * 270.00019 * 30 29 6 51 51 H 1.09001 * 109.47533 * 29.99918 * 30 29 6 52 52 H 1.08999 * 109.47310 * 150.00014 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5661 1.4439 0.1095 5 6 3.9800 0.8883 1.4736 6 7 1.6392 2.1022 -1.2452 7 7 1.9957 1.6974 -2.5364 8 6 1.4562 2.5138 -3.3990 9 6 0.7313 3.4914 -2.6815 10 6 -0.0332 4.6124 -3.2581 11 8 -0.6218 5.3863 -2.5278 12 7 -0.0797 4.7795 -4.5947 13 6 -0.8344 5.8970 -5.1673 14 1 -0.7606 6.7614 -4.5075 15 6 -2.2808 5.5017 -5.3175 16 1 -2.5469 4.4618 -5.4375 17 6 -3.2647 6.4675 -5.3017 18 7 -2.9362 7.7401 -5.2523 19 14 -5.0642 5.9687 -5.3506 20 1 -5.3750 5.1207 -4.1718 21 1 -5.9159 7.1849 -5.3245 22 1 -5.3322 5.2039 -6.5951 23 6 -0.2663 6.2467 -6.5186 24 6 0.0008 5.2474 -7.4358 25 6 0.5178 5.5686 -8.6769 26 6 0.7762 6.8882 -8.9976 27 6 0.5139 7.8870 -8.0786 28 6 -0.0072 7.5662 -6.8391 29 6 0.8679 3.1970 -1.3399 30 6 0.2621 3.9633 -0.1923 31 1 -0.3634 0.4321 -0.9324 32 1 -0.3633 -1.0235 0.0921 33 1 -0.3633 0.5915 0.8405 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6144 1.9783 0.8484 37 1 3.9876 0.8211 -0.6795 38 1 3.9369 2.4634 0.0048 39 1 3.6017 1.5399 2.2614 40 1 3.5657 -0.1120 1.5995 41 1 5.0674 0.8412 1.5321 42 1 1.5495 2.4542 -4.4734 43 1 0.3896 4.1620 -5.1773 44 1 -3.6283 8.4195 -5.2408 45 1 -0.1973 4.2161 -7.1837 46 1 0.7224 4.7884 -9.3950 47 1 1.1826 7.1389 -9.9663 48 1 0.7154 8.9179 -8.3293 49 1 -0.2122 8.3465 -6.1212 50 1 -0.7214 3.5541 0.0389 51 1 0.9063 3.8769 0.6827 52 1 0.1631 5.0131 -0.4684 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584908538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:49 Heat of formation + Delta-G solvation = 43.992826 kcal Electronic energy + Delta-G solvation = -31737.554528 eV Core-core repulsion = 27702.845331 eV Total energy + Delta-G solvation = -4034.709197 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 355.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33895 -38.78175 -37.83515 -36.86576 -34.38750 -32.60725 -32.15297 -32.02781 -30.95987 -30.11037 -29.95271 -27.40719 -26.49053 -26.12789 -23.36683 -23.13912 -22.30784 -21.90958 -21.44694 -20.01930 -19.28511 -18.98709 -17.23554 -16.56406 -16.38554 -15.72869 -15.34723 -15.05074 -15.02746 -14.39321 -14.32840 -14.24354 -14.02239 -13.99487 -13.63398 -13.31535 -13.04642 -12.88950 -12.74413 -12.59170 -12.54169 -12.44696 -12.26031 -12.23473 -11.94107 -11.85902 -11.79869 -11.47596 -11.33635 -11.13048 -10.97542 -10.91239 -10.88355 -10.52909 -10.30942 -10.24221 -9.92219 -9.71271 -9.20076 -8.84390 -8.49620 -8.31275 -8.06634 -7.91891 -7.58653 -6.04674 -4.10460 1.83335 2.25436 2.29738 2.41403 2.55306 3.33850 3.37467 3.41310 4.09487 4.25995 4.37951 4.46369 4.47619 4.57898 4.72220 4.78079 4.84492 4.91451 5.03102 5.10456 5.15392 5.20647 5.28623 5.35469 5.42856 5.59182 5.63328 5.64374 5.68199 5.70155 5.71516 5.75792 5.78311 5.82582 5.88036 5.96497 6.02739 6.13543 6.17932 6.34353 6.38996 6.50595 6.67511 6.82333 6.92515 7.06629 7.27783 7.30379 7.36623 7.64348 7.76204 7.78040 7.87611 7.98662 8.19657 8.63525 8.95608 9.36302 9.55292 11.00332 Molecular weight = 355.20amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.002855 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.360965 B = 9804.290144 C =11203.174124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C 0.160 3.840 4 C -0.132 4.132 5 C -0.152 4.152 6 N -0.357 5.357 7 N -0.301 5.301 8 C 0.077 3.923 9 C -0.281 4.281 10 C 0.586 3.414 11 O -0.544 6.544 12 N -0.713 5.713 13 C 0.296 3.704 14 H 0.078 0.922 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.034 4.034 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.151 4.151 27 C -0.128 4.128 28 C -0.097 4.097 29 C 0.146 3.854 30 C -0.097 4.097 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.185 0.815 43 H 0.379 0.621 44 H 0.264 0.736 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.123 0.877 50 H 0.083 0.917 51 H 0.062 0.938 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 -11.621 8.625 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.058 3.942 4 C -0.170 4.170 5 C -0.209 4.209 6 N -0.138 5.138 7 N -0.120 5.120 8 C -0.110 4.110 9 C -0.296 4.296 10 C 0.372 3.628 11 O -0.423 6.423 12 N -0.361 5.361 13 C 0.195 3.805 14 H 0.095 0.905 15 C -0.551 4.551 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.513 5.513 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.036 4.036 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.169 4.169 27 C -0.146 4.146 28 C -0.115 4.115 29 C 0.015 3.985 30 C -0.155 4.155 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.202 0.798 43 H 0.211 0.789 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.141 0.859 50 H 0.101 0.899 51 H 0.081 0.919 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.436 -11.955 9.419 19.655 hybrid contribution -1.463 0.145 -0.796 1.672 sum 10.973 -11.810 8.623 18.282 Atomic orbital electron populations 1.21774 0.95088 1.01961 1.02339 1.21931 0.96795 0.94712 1.03566 1.21487 0.95996 0.94324 0.82405 1.21844 0.93503 1.02709 0.98925 1.21815 1.01775 1.01277 0.96066 1.48481 1.38431 1.21054 1.05823 1.77017 1.24261 1.23766 0.86974 1.23976 0.95128 0.92308 0.99627 1.20376 1.13078 1.04078 0.92046 1.17031 0.79889 0.83233 0.82627 1.90707 1.45891 1.45924 1.59730 1.46263 1.52505 1.31599 1.05690 1.17784 0.88893 0.86510 0.87333 0.90466 1.21153 0.89719 0.93562 1.50696 0.92314 1.24903 0.99185 0.94868 0.94168 1.69889 1.33600 0.99491 1.48294 0.86597 0.84516 0.77963 0.78580 1.20128 1.21194 1.20285 1.20659 0.91517 0.92843 0.98564 1.20852 1.00657 0.99022 0.93819 1.20915 1.01330 0.95926 0.96684 1.20830 1.03775 0.93385 0.98951 1.21021 1.00803 0.98267 0.94516 1.21049 0.97280 0.96688 0.96500 1.21441 0.92421 0.88221 0.96435 1.20655 0.99856 1.02343 0.92671 0.92441 0.92310 0.92644 0.90340 0.90048 0.88087 0.90402 0.91308 0.92426 0.92045 0.92021 0.79847 0.78888 0.92604 0.87187 0.87525 0.87680 0.87423 0.85940 0.89878 0.91932 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.73 37.16 0.36 -1.09 16 2 C -0.13 -1.12 5.41 -26.73 -0.14 -1.27 16 3 C 0.16 1.51 2.48 -67.93 -0.17 1.34 16 4 C -0.13 -1.10 5.64 -26.73 -0.15 -1.25 16 5 C -0.15 -0.89 9.75 37.16 0.36 -0.53 16 6 N -0.36 -4.66 2.77 -50.16 -0.14 -4.80 16 7 N -0.30 -4.35 12.33 30.86 0.38 -3.97 16 8 C 0.08 1.15 11.50 -16.98 -0.20 0.95 16 9 C -0.28 -4.87 6.13 -105.07 -0.64 -5.51 16 10 C 0.59 12.46 7.77 -12.52 -0.10 12.37 16 11 O -0.54 -13.52 14.50 5.28 0.08 -13.44 16 12 N -0.71 -14.82 5.01 -57.15 -0.29 -15.11 16 13 C 0.30 7.23 2.10 -70.24 -0.15 7.08 16 14 H 0.08 2.18 6.87 -51.93 -0.36 1.83 16 15 C -0.51 -13.86 8.49 -34.44 -0.29 -14.16 16 16 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 18 N -0.88 -24.74 12.99 55.43 0.72 -24.02 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.03 -0.76 4.93 -104.62 -0.52 -1.28 16 24 C -0.13 -2.43 8.91 -39.58 -0.35 -2.79 16 25 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 26 C -0.15 -2.60 10.05 -39.58 -0.40 -2.99 16 27 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 28 C -0.10 -2.09 9.67 -39.58 -0.38 -2.47 16 29 C 0.15 2.21 7.01 -81.61 -0.57 1.63 16 30 C -0.10 -1.28 9.40 36.01 0.34 -0.95 16 31 H 0.06 0.70 7.88 -51.93 -0.41 0.29 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.51 6.35 -51.93 -0.33 0.18 16 36 H 0.10 0.82 6.63 -51.93 -0.34 0.47 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.31 6.38 -51.93 -0.33 -0.02 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.18 2.24 7.50 -52.48 -0.39 1.84 16 43 H 0.38 6.66 6.24 -40.82 -0.25 6.41 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.11 1.97 7.35 -52.49 -0.39 1.58 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 48 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 49 H 0.12 2.79 7.99 -52.49 -0.42 2.37 16 50 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.06 0.62 7.07 -51.93 -0.37 0.25 16 52 H 0.11 1.73 6.50 -51.93 -0.34 1.39 16 LS Contribution 425.16 15.07 6.41 6.41 Total: -1.00 -32.25 425.16 -9.88 -42.13 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -8.13 Total: 10.55 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.89 Total: -14.42 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.68 Total: -47.90 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -32.25 -9.88 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584908538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.123 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds