Wall clock time and date at job start Tue Mar 31 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 C 1.53002 * 109.47373 * 175.64539 * 3 2 1 5 5 C 1.52998 * 109.47151 * 294.12481 * 4 3 2 6 6 N 1.46503 * 109.46913 * 295.64594 * 3 2 1 7 7 N 1.39934 * 125.75198 * 299.99551 * 6 3 2 8 8 C 1.30449 * 108.89000 * 179.73945 * 7 6 3 9 9 C 1.41286 * 108.02660 * 0.41011 * 8 7 6 10 10 C 1.47429 * 126.41458 * 179.85828 * 9 8 7 11 11 O 1.21601 * 120.00031 * 179.69186 * 10 9 8 12 12 N 1.34779 * 120.00021 * 359.68271 * 10 9 8 13 13 C 1.46501 * 119.99706 * 180.27739 * 12 10 9 14 14 H 1.08996 * 109.47517 * 34.73038 * 13 12 10 15 15 C 1.50693 * 109.47129 * 274.72530 * 13 12 10 16 16 H 1.08005 * 120.00247 * 333.50774 * 15 13 12 17 17 C 1.37882 * 120.00159 * 153.51144 * 15 13 12 18 18 N 1.31519 * 119.99695 * 4.88117 * 17 15 13 19 19 Si 1.86795 * 120.00117 * 184.87572 * 17 15 13 20 20 H 1.48496 * 109.47396 * 60.00323 * 19 17 15 21 21 H 1.48509 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 299.99777 * 19 17 15 23 23 C 1.50703 * 109.46770 * 154.72531 * 13 12 10 24 24 C 1.38238 * 119.99994 * 46.86784 * 23 13 12 25 25 C 1.38234 * 120.00123 * 179.79013 * 24 23 13 26 26 C 1.38237 * 119.99873 * 0.43383 * 25 24 23 27 27 C 1.38239 * 119.99965 * 359.81733 * 26 25 24 28 28 C 1.38233 * 120.00135 * 227.13295 * 23 13 12 29 29 C 1.34255 * 125.75353 * 119.99930 * 6 3 2 30 30 C 1.50700 * 126.29176 * 359.97438 * 29 6 3 31 31 H 1.08996 * 109.47312 * 65.13645 * 1 2 3 32 32 H 1.08997 * 109.46824 * 185.14056 * 1 2 3 33 33 H 1.09008 * 109.46785 * 305.13732 * 1 2 3 34 34 H 1.08998 * 109.47308 * 240.00221 * 2 1 3 35 35 H 1.08999 * 109.47346 * 119.99958 * 2 1 3 36 36 H 1.08997 * 109.46738 * 55.64494 * 3 2 1 37 37 H 1.09003 * 109.47016 * 54.12350 * 4 3 2 38 38 H 1.08989 * 109.47137 * 174.12441 * 4 3 2 39 39 H 1.09007 * 109.47090 * 297.10525 * 5 4 3 40 40 H 1.09002 * 109.47447 * 57.10078 * 5 4 3 41 41 H 1.08998 * 109.47729 * 177.10200 * 5 4 3 42 42 H 1.08005 * 125.98418 * 180.26857 * 8 7 6 43 43 H 0.97000 * 119.99876 * 0.02562 * 12 10 9 44 44 H 0.96991 * 119.99888 * 180.02562 * 18 17 15 45 45 H 1.08000 * 119.99906 * 359.97438 * 24 23 13 46 46 H 1.07994 * 120.00479 * 180.27120 * 25 24 23 47 47 H 1.07999 * 120.00310 * 179.83988 * 26 25 24 48 48 H 1.07995 * 120.00072 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00209 * 359.97438 * 28 23 13 50 50 H 1.09004 * 109.47378 * 270.00019 * 30 29 6 51 51 H 1.09001 * 109.47533 * 29.99918 * 30 29 6 52 52 H 1.08999 * 109.47310 * 150.00014 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5661 1.4439 0.1095 5 6 3.9800 0.8883 1.4736 6 7 1.6392 2.1022 -1.2452 7 7 1.9957 1.6974 -2.5364 8 6 1.4562 2.5138 -3.3990 9 6 0.7313 3.4914 -2.6815 10 6 -0.0332 4.6124 -3.2581 11 8 -0.6218 5.3863 -2.5278 12 7 -0.0797 4.7795 -4.5947 13 6 -0.8344 5.8970 -5.1673 14 1 -0.7606 6.7614 -4.5075 15 6 -2.2808 5.5017 -5.3175 16 1 -2.5469 4.4618 -5.4375 17 6 -3.2647 6.4675 -5.3017 18 7 -2.9362 7.7401 -5.2523 19 14 -5.0642 5.9687 -5.3506 20 1 -5.3750 5.1207 -4.1718 21 1 -5.9159 7.1849 -5.3245 22 1 -5.3322 5.2039 -6.5951 23 6 -0.2663 6.2467 -6.5186 24 6 0.0008 5.2474 -7.4358 25 6 0.5178 5.5686 -8.6769 26 6 0.7762 6.8882 -8.9976 27 6 0.5139 7.8870 -8.0786 28 6 -0.0072 7.5662 -6.8391 29 6 0.8679 3.1970 -1.3399 30 6 0.2621 3.9633 -0.1923 31 1 -0.3634 0.4321 -0.9324 32 1 -0.3633 -1.0235 0.0921 33 1 -0.3633 0.5915 0.8405 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6144 1.9783 0.8484 37 1 3.9876 0.8211 -0.6795 38 1 3.9369 2.4634 0.0048 39 1 3.6017 1.5399 2.2614 40 1 3.5657 -0.1120 1.5995 41 1 5.0674 0.8412 1.5321 42 1 1.5495 2.4542 -4.4734 43 1 0.3896 4.1620 -5.1773 44 1 -3.6283 8.4195 -5.2408 45 1 -0.1973 4.2161 -7.1837 46 1 0.7224 4.7884 -9.3950 47 1 1.1826 7.1389 -9.9663 48 1 0.7154 8.9179 -8.3293 49 1 -0.2122 8.3465 -6.1212 50 1 -0.7214 3.5541 0.0389 51 1 0.9063 3.8769 0.6827 52 1 0.1631 5.0131 -0.4684 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584908538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:47 Heat of formation + Delta-G solvation = 26.116895 kcal Electronic energy + Delta-G solvation = -31738.329687 eV Core-core repulsion = 27702.845331 eV Total energy + Delta-G solvation = -4035.484355 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 355.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50723 -40.40701 -39.37797 -37.74759 -36.17944 -34.30938 -33.48576 -32.75971 -32.31339 -31.56406 -31.39297 -28.86327 -27.93024 -27.15121 -25.14375 -23.83299 -23.56721 -23.20179 -22.74372 -21.59955 -20.60834 -20.19468 -18.64696 -18.48680 -17.63394 -16.92601 -16.88824 -16.59465 -16.11006 -15.76959 -15.62846 -15.49022 -15.23269 -15.14133 -14.93610 -14.76960 -14.43123 -14.17959 -14.03522 -13.92529 -13.72222 -13.58715 -13.46764 -13.23809 -13.14022 -13.04022 -12.87493 -12.80399 -12.75786 -12.49971 -12.10520 -12.07380 -11.97460 -11.93851 -11.69324 -11.66520 -11.56412 -11.52956 -10.61420 -10.53071 -10.27131 -9.82162 -9.56823 -9.44391 -9.26906 -8.11309 -6.24681 0.59877 0.74239 0.77981 1.26139 1.36705 1.38810 1.40665 1.46525 2.37589 2.71472 2.76262 3.14728 3.26791 3.36812 3.61361 3.76820 3.80210 3.98458 4.06372 4.22953 4.25388 4.29679 4.33076 4.41302 4.42024 4.42840 4.47558 4.56270 4.59463 4.62099 4.70962 4.83075 4.87834 4.94625 4.97338 4.97608 5.08205 5.11586 5.15887 5.18269 5.21113 5.29249 5.38704 5.40343 5.46127 5.52725 5.67997 5.80076 5.83310 5.91468 6.00303 6.08219 6.26590 6.39597 6.58980 6.79316 7.06587 7.40431 7.73775 8.91419 Molecular weight = 355.20amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.002855 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.360965 B = 9804.290144 C =11203.174124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.147 3.853 4 C -0.125 4.125 5 C -0.147 4.147 6 N -0.344 5.344 7 N -0.304 5.304 8 C 0.080 3.920 9 C -0.315 4.315 10 C 0.581 3.419 11 O -0.592 6.592 12 N -0.706 5.706 13 C 0.309 3.691 14 H 0.024 0.976 15 C -0.525 4.525 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.904 5.904 19 Si 0.951 3.049 20 H -0.280 1.280 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.060 4.060 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.141 4.141 27 C -0.130 4.130 28 C -0.124 4.124 29 C 0.150 3.850 30 C -0.094 4.094 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.206 0.794 43 H 0.395 0.605 44 H 0.262 0.738 45 H 0.122 0.878 46 H 0.148 0.852 47 H 0.147 0.853 48 H 0.131 0.869 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.646 -14.182 8.068 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.047 3.953 4 C -0.164 4.164 5 C -0.204 4.204 6 N -0.123 5.123 7 N -0.124 5.124 8 C -0.107 4.107 9 C -0.330 4.330 10 C 0.369 3.631 11 O -0.474 6.474 12 N -0.355 5.355 13 C 0.206 3.794 14 H 0.042 0.958 15 C -0.563 4.563 16 H 0.070 0.930 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.777 3.223 20 H -0.206 1.206 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.062 4.062 24 C -0.150 4.150 25 C -0.140 4.140 26 C -0.159 4.159 27 C -0.148 4.148 28 C -0.143 4.143 29 C 0.016 3.984 30 C -0.152 4.152 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.223 0.777 43 H 0.230 0.770 44 H 0.071 0.929 45 H 0.140 0.860 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.149 0.851 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.120 0.880 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.939 -14.571 8.849 22.021 hybrid contribution -1.785 0.892 -0.583 2.079 sum 12.154 -13.679 8.266 20.079 Atomic orbital electron populations 1.21773 0.95774 1.02607 1.00942 1.21918 0.96019 0.93909 1.04420 1.21995 0.97069 0.95031 0.81217 1.21793 0.92308 1.01957 1.00317 1.21800 1.02246 1.01951 0.94419 1.48805 1.36907 1.20096 1.06538 1.76989 1.24197 1.23645 0.87544 1.24263 0.94327 0.91355 1.00792 1.20126 1.15043 1.04245 0.93567 1.17617 0.79453 0.83636 0.82358 1.90672 1.48129 1.47934 1.60668 1.46041 1.52224 1.31143 1.06081 1.17301 0.88719 0.85533 0.87890 0.95758 1.21408 0.91460 0.93131 1.50318 0.92961 1.25645 1.02898 0.94977 0.94343 1.70031 1.34301 1.00187 1.49666 0.85722 0.80275 0.77694 0.78605 1.20564 1.20670 1.19098 1.20452 0.93914 0.93954 0.97835 1.21016 1.00768 0.98831 0.94374 1.21364 0.99237 0.97282 0.96108 1.21318 1.01844 0.92750 0.99943 1.21294 0.99839 1.00266 0.93368 1.20983 0.99546 0.95962 0.97789 1.21667 0.91909 0.88569 0.96215 1.20649 1.00988 1.00158 0.93439 0.95820 0.91178 0.91534 0.91760 0.86835 0.86098 0.91544 0.92536 0.91412 0.90805 0.91522 0.77703 0.76962 0.92905 0.86036 0.83478 0.83529 0.85080 0.89004 0.89346 0.88004 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.73 71.98 0.70 -1.92 16 2 C -0.13 -1.81 5.41 30.59 0.17 -1.65 16 3 C 0.15 2.45 2.48 44.99 0.11 2.56 16 4 C -0.13 -1.84 5.64 30.59 0.17 -1.66 16 5 C -0.15 -1.26 9.75 71.98 0.70 -0.55 16 6 N -0.34 -8.68 2.77 -312.62 -0.87 -9.54 16 7 N -0.30 -8.61 12.33 -56.27 -0.69 -9.30 16 8 C 0.08 2.38 11.50 85.65 0.99 3.36 16 9 C -0.31 -11.30 6.13 -20.15 -0.12 -11.42 16 10 C 0.58 26.34 7.77 86.66 0.67 27.02 16 11 O -0.59 -31.87 14.50 -4.03 -0.06 -31.93 16 12 N -0.71 -31.11 5.01 -452.98 -2.27 -33.38 16 13 C 0.31 16.07 2.10 43.50 0.09 16.17 16 14 H 0.02 1.52 6.87 -2.39 -0.02 1.50 16 15 C -0.52 -29.75 8.49 25.60 0.22 -29.53 16 16 H 0.05 2.94 7.82 -2.91 -0.02 2.92 16 17 C 0.02 1.31 5.45 84.66 0.46 1.77 16 18 N -0.90 -54.05 12.99 21.45 0.28 -53.77 16 19 Si 0.95 45.89 29.54 68.60 2.03 47.91 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 C -0.06 -2.77 4.93 -19.86 -0.10 -2.87 16 24 C -0.13 -5.01 8.91 22.27 0.20 -4.81 16 25 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 26 C -0.14 -4.34 10.05 22.27 0.22 -4.11 16 27 C -0.13 -4.70 10.05 22.27 0.22 -4.47 16 28 C -0.12 -5.61 9.67 22.27 0.22 -5.39 16 29 C 0.15 4.57 7.01 42.14 0.30 4.86 16 30 C -0.09 -2.51 9.40 71.24 0.67 -1.84 16 31 H 0.02 0.55 7.88 -2.39 -0.02 0.53 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 0.97 6.35 -2.39 -0.02 0.95 16 36 H 0.12 1.57 6.63 -2.39 -0.02 1.55 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.07 0.46 6.38 -2.39 -0.02 0.45 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.21 4.87 7.50 -2.91 -0.02 4.85 16 43 H 0.40 14.38 6.24 -92.71 -0.58 13.80 16 44 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.12 4.23 7.35 -2.91 -0.02 4.21 16 46 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 47 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 48 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 49 H 0.09 4.60 7.99 -2.91 -0.02 4.58 16 50 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 51 H 0.10 1.83 7.07 -2.39 -0.02 1.81 16 52 H 0.08 2.67 6.50 -2.39 -0.02 2.65 16 Total: -1.00 -76.70 425.16 4.87 -71.83 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.34 Total: 36.29 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 6.11 Total: -18.11 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.55 Total: -105.99 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.06 Total: -31.93 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.70 4.87 -71.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584908538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.946 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds