Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.21381 * 2 1 4 4 C 1.52161 * 109.34518 * 240.39099 * 2 1 3 5 5 N 1.46395 * 111.25447 * 301.27927 * 4 2 1 6 6 C 1.34775 * 119.83263 * 116.59941 * 5 4 2 7 7 O 1.21583 * 120.00235 * 355.12080 * 6 5 4 8 8 N 1.34779 * 119.99930 * 175.11462 * 6 5 4 9 9 C 1.39735 * 120.00204 * 185.26627 * 8 6 5 10 10 C 1.40795 * 125.88541 * 359.97438 * 9 8 6 11 11 C 1.35082 * 107.93545 * 180.02562 * 10 9 8 12 12 N 1.36388 * 107.72719 * 359.97438 * 11 10 9 13 13 C 1.37203 * 126.04948 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00403 * 5.02754 * 13 12 11 15 15 C 1.38959 * 119.99614 * 185.02397 * 13 12 11 16 16 N 1.31330 * 119.99898 * 354.98146 * 15 13 12 17 17 Si 1.86801 * 119.99757 * 174.98224 * 15 13 12 18 18 H 1.48501 * 109.47092 * 94.99849 * 17 15 13 19 19 H 1.48500 * 109.46970 * 214.99813 * 17 15 13 20 20 H 1.48498 * 109.47182 * 335.00108 * 17 15 13 21 21 N 1.31422 * 125.88407 * 179.69798 * 9 8 6 22 22 C 1.47650 * 120.19102 * 296.42016 * 5 4 2 23 23 C 1.51486 * 108.38898 * 80.21996 * 22 5 4 24 24 C 1.37770 * 120.64727 * 115.34663 * 23 22 5 25 25 C 1.38412 * 119.70294 * 176.53138 * 24 23 22 26 26 C 1.38289 * 120.03260 * 359.97438 * 25 24 23 27 27 C 1.38148 * 120.28899 * 0.77269 * 26 25 24 28 28 C 1.38674 * 118.77297 * 293.67760 * 23 22 5 29 29 O 1.35740 * 120.07714 * 6.66742 * 28 23 22 30 30 H 1.08995 * 109.47231 * 300.38739 * 1 2 3 31 31 H 1.09008 * 109.46801 * 60.39092 * 1 2 3 32 32 H 1.09001 * 109.47163 * 180.38180 * 1 2 3 33 33 H 1.09002 * 109.46974 * 179.60986 * 3 2 1 34 34 H 1.08992 * 109.47077 * 299.61065 * 3 2 1 35 35 H 1.09000 * 109.46558 * 59.60960 * 3 2 1 36 36 H 1.09008 * 109.12246 * 61.73667 * 4 2 1 37 37 H 1.09000 * 109.12511 * 180.82395 * 4 2 1 38 38 H 0.97004 * 119.99859 * 5.26587 * 8 6 5 39 39 H 1.08000 * 126.03179 * 0.03882 * 10 9 8 40 40 H 1.07999 * 126.14127 * 180.02562 * 11 10 9 41 41 H 0.96997 * 119.99857 * 180.02562 * 16 15 13 42 42 H 1.09003 * 110.04842 * 320.38126 * 22 5 4 43 43 H 1.09007 * 109.47570 * 199.72243 * 22 5 4 44 44 H 1.08000 * 120.14814 * 356.50429 * 24 23 22 45 45 H 1.07998 * 119.98504 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.85393 * 180.75306 * 26 25 24 47 47 H 1.08002 * 120.09818 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4448 0.0000 4 6 2.0340 -0.7093 -1.2482 5 7 1.5414 -2.0865 -1.3115 6 6 0.7274 -2.4618 -2.3179 7 8 0.3325 -1.6378 -3.1199 8 7 0.3512 -3.7507 -2.4354 9 6 -0.4016 -4.1611 -3.5388 10 6 -0.8338 -3.3371 -4.5955 11 6 -1.5311 -4.1035 -5.4622 12 7 -1.5428 -5.3769 -4.9738 13 6 -2.1475 -6.4606 -5.5591 14 1 -2.6054 -6.3632 -6.5324 15 6 -2.1707 -7.6835 -4.8996 16 7 -1.5299 -7.8285 -3.7624 17 14 -3.1134 -9.1210 -5.6304 18 1 -2.1873 -9.9680 -6.4242 19 1 -3.7091 -9.9297 -4.5366 20 1 -4.1932 -8.6082 -6.5115 21 7 -0.8238 -5.3836 -3.7716 22 6 1.9371 -3.0647 -0.2787 23 6 1.0730 -2.8430 0.9456 24 6 0.1919 -3.8140 1.3685 25 6 -0.5357 -3.6209 2.5301 26 6 -0.3766 -2.4579 3.2612 27 6 0.4954 -1.4773 2.8294 28 6 1.2101 -1.6586 1.6538 29 8 2.0042 -0.6675 1.1745 30 1 -0.3633 0.5198 0.8864 31 1 -0.3633 0.5078 -0.8936 32 1 -0.3633 -1.0276 0.0068 33 1 3.1235 1.4497 0.0070 34 1 1.6736 1.9550 -0.8934 35 1 1.6621 1.9589 0.8865 36 1 1.6922 -0.1670 -2.1298 37 1 3.1239 -0.7202 -1.2373 38 1 0.6030 -4.3935 -1.7539 39 1 -0.6415 -2.2791 -4.6956 40 1 -1.9952 -3.7684 -6.3779 41 1 -1.5457 -8.6822 -3.3023 42 1 2.9859 -2.9270 -0.0158 43 1 1.7825 -4.0753 -0.6572 44 1 0.0691 -4.7215 0.7961 45 1 -1.2280 -4.3789 2.8656 46 1 -0.9368 -2.3156 4.1736 47 1 0.6169 -0.5700 3.4026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585141661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = 72.545395 kcal Electronic energy + Delta-G solvation = -32600.097572 eV Core-core repulsion = 28365.367502 eV Total energy + Delta-G solvation = -4234.730070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27807 -39.83540 -38.84226 -37.97519 -35.45300 -34.50545 -33.71506 -32.92449 -31.41737 -29.93881 -29.68986 -28.27463 -27.53493 -26.90160 -25.96781 -24.50940 -22.85315 -22.09725 -20.80666 -20.38147 -20.22027 -18.78813 -18.01076 -17.46505 -17.19008 -16.49572 -16.05555 -15.88836 -15.69310 -15.27304 -15.13771 -14.50647 -14.38375 -14.16124 -13.93641 -13.77507 -13.53440 -13.16130 -13.07017 -12.74176 -12.55610 -12.47792 -12.18220 -12.15468 -12.01761 -11.91756 -11.67555 -11.61356 -11.49348 -11.28514 -11.24624 -10.93243 -10.91714 -10.48207 -10.29894 -10.11145 -9.51804 -9.07010 -9.01522 -8.69696 -8.65255 -8.54823 -7.33407 -7.18013 -6.53147 -4.16518 1.02192 1.19819 2.73042 2.97374 3.07723 3.11848 3.21432 3.31467 3.72572 3.77330 3.88467 4.11227 4.48666 4.52657 4.63233 4.72699 4.75381 4.76819 4.91102 5.03058 5.06039 5.06312 5.19603 5.28575 5.36116 5.43684 5.45662 5.49219 5.61887 5.66475 5.71875 5.83907 5.86345 5.93805 6.12008 6.22684 6.27744 6.34923 6.38645 6.48715 6.50587 6.62407 6.99729 7.06413 7.22724 7.39316 7.42527 7.56075 7.83226 8.28913 8.33351 8.74279 9.04548 9.46436 9.69464 10.44297 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002936 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.297722 B = 9535.770331 C =10893.221370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 C -0.139 4.139 4 C 0.114 3.886 5 N -0.627 5.627 6 C 0.713 3.287 7 O -0.568 6.568 8 N -0.633 5.633 9 C 0.200 3.800 10 C -0.288 4.288 11 C -0.054 4.054 12 N -0.146 5.146 13 C -0.324 4.324 14 H 0.117 0.883 15 C 0.047 3.953 16 N -0.779 5.779 17 Si 0.931 3.069 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.264 1.264 21 N -0.279 5.279 22 C 0.153 3.847 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.128 4.128 26 C -0.103 4.103 27 C -0.138 4.138 28 C 0.122 3.878 29 O -0.325 6.325 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.398 0.602 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.271 0.729 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 11.304 13.221 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.065 3.935 3 C -0.197 4.197 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.414 3.586 7 O -0.444 6.444 8 N -0.282 5.282 9 C -0.044 4.044 10 C -0.321 4.321 11 C -0.203 4.203 12 N 0.085 4.915 13 C -0.456 4.456 14 H 0.135 0.865 15 C -0.169 4.169 16 N -0.406 5.406 17 Si 0.755 3.245 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.188 1.188 21 N -0.117 5.117 22 C 0.030 3.970 23 C -0.142 4.142 24 C -0.106 4.106 25 C -0.146 4.146 26 C -0.122 4.122 27 C -0.157 4.157 28 C 0.078 3.922 29 O -0.242 6.242 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.102 10.606 13.241 18.029 hybrid contribution -0.472 -0.419 -0.161 0.651 sum 5.630 10.187 13.080 17.508 Atomic orbital electron populations 1.22444 0.94155 1.03736 1.02871 1.22110 0.94713 0.92473 0.84218 1.21808 1.02214 0.92504 1.03131 1.21686 0.98766 0.81822 0.98700 1.47192 1.51876 1.10975 1.26375 1.15557 0.79213 0.82411 0.81444 1.90823 1.58907 1.50909 1.43751 1.41267 1.54888 1.08082 1.23959 1.18908 1.01584 0.93896 0.90061 1.20998 1.13012 1.00618 0.97439 1.22106 1.10073 0.85631 1.02538 1.44424 1.29597 1.05178 1.12273 1.19861 1.35064 0.86945 1.03734 0.86514 1.25580 0.96496 0.99228 0.95578 1.70217 1.32914 1.24612 1.12871 0.85860 0.79602 0.80098 0.78894 1.19776 1.20183 1.18795 1.78224 1.17150 1.13971 1.02314 1.20780 0.98239 0.92945 0.85009 1.20776 0.99705 0.95403 0.98327 1.20996 0.94703 0.98686 0.96218 1.21210 1.00067 0.97921 0.95390 1.21034 0.97857 0.93526 0.99745 1.21216 0.96158 1.00306 0.97989 1.18335 0.92432 0.87904 0.93537 1.86138 1.45892 1.47798 1.44388 0.92094 0.90678 0.91340 0.91404 0.90327 0.91474 0.87318 0.90822 0.76578 0.83925 0.83647 0.91838 0.88755 0.89325 0.85153 0.85594 0.85729 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 7.45 37.16 0.28 -1.91 16 2 C 0.10 1.15 1.09 -91.05 -0.10 1.05 16 3 C -0.14 -1.17 8.81 37.16 0.33 -0.84 16 4 C 0.11 1.42 4.93 -4.53 -0.02 1.40 16 5 N -0.63 -9.15 2.02 -179.98 -0.36 -9.52 16 6 C 0.71 13.60 8.23 -86.92 -0.72 12.89 16 7 O -0.57 -12.41 12.79 5.29 0.07 -12.34 16 8 N -0.63 -13.08 5.32 -15.48 -0.08 -13.17 16 9 C 0.20 5.09 8.10 -154.49 -1.25 3.84 16 10 C -0.29 -7.32 9.60 -39.74 -0.38 -7.70 16 11 C -0.05 -1.37 11.45 -16.65 -0.19 -1.56 16 12 N -0.15 -4.06 3.73 -11.61 -0.04 -4.11 16 13 C -0.32 -8.68 10.23 -14.88 -0.15 -8.83 16 14 H 0.12 2.83 7.84 -52.49 -0.41 2.41 16 15 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 16 N -0.78 -21.28 11.83 55.49 0.66 -20.62 16 17 Si 0.93 19.01 29.55 -169.99 -5.02 13.98 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 N -0.28 -7.85 10.44 31.47 0.33 -7.53 16 22 C 0.15 1.91 5.68 -4.18 -0.02 1.89 16 23 C -0.14 -1.76 4.50 -104.25 -0.47 -2.23 16 24 C -0.09 -1.07 9.70 -39.69 -0.39 -1.45 16 25 C -0.13 -1.39 10.05 -39.50 -0.40 -1.79 16 26 C -0.10 -1.04 10.03 -39.60 -0.40 -1.44 16 27 C -0.14 -1.50 9.92 -39.42 -0.39 -1.89 16 28 C 0.12 1.50 4.07 -39.22 -0.16 1.34 16 29 O -0.32 -3.94 9.53 -18.93 -0.18 -4.12 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.07 1.04 5.88 -51.93 -0.31 0.73 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.11 1.47 6.89 -51.92 -0.36 1.11 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.40 7.29 6.34 -40.82 -0.26 7.03 16 39 H 0.14 3.57 5.91 -52.49 -0.31 3.26 16 40 H 0.15 3.15 8.06 -52.49 -0.42 2.73 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.08 5.62 -51.93 -0.29 0.78 16 44 H 0.13 1.54 8.00 -52.49 -0.42 1.12 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 46 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 47 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -33.52 379.90 -9.58 -43.11 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.14 Total: 14.71 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -4.53 Total: -6.13 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.50 Total: -54.94 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.11 Total: -16.46 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.52 -9.58 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585141661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.652 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds