Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.21381 * 2 1 4 4 C 1.52161 * 109.34518 * 240.39099 * 2 1 3 5 5 N 1.46395 * 111.25447 * 301.27927 * 4 2 1 6 6 C 1.34775 * 119.83263 * 116.59941 * 5 4 2 7 7 O 1.21583 * 120.00235 * 355.12080 * 6 5 4 8 8 N 1.34779 * 119.99930 * 175.11462 * 6 5 4 9 9 C 1.39735 * 120.00204 * 185.26627 * 8 6 5 10 10 C 1.40795 * 125.88541 * 359.97438 * 9 8 6 11 11 C 1.35082 * 107.93545 * 180.02562 * 10 9 8 12 12 N 1.36388 * 107.72719 * 359.97438 * 11 10 9 13 13 C 1.37203 * 126.04948 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00403 * 5.02754 * 13 12 11 15 15 C 1.38959 * 119.99614 * 185.02397 * 13 12 11 16 16 N 1.31330 * 119.99898 * 354.98146 * 15 13 12 17 17 Si 1.86801 * 119.99757 * 174.98224 * 15 13 12 18 18 H 1.48501 * 109.47092 * 94.99849 * 17 15 13 19 19 H 1.48500 * 109.46970 * 214.99813 * 17 15 13 20 20 H 1.48498 * 109.47182 * 335.00108 * 17 15 13 21 21 N 1.31422 * 125.88407 * 179.69798 * 9 8 6 22 22 C 1.47650 * 120.19102 * 296.42016 * 5 4 2 23 23 C 1.51486 * 108.38898 * 80.21996 * 22 5 4 24 24 C 1.37770 * 120.64727 * 115.34663 * 23 22 5 25 25 C 1.38412 * 119.70294 * 176.53138 * 24 23 22 26 26 C 1.38289 * 120.03260 * 359.97438 * 25 24 23 27 27 C 1.38148 * 120.28899 * 0.77269 * 26 25 24 28 28 C 1.38674 * 118.77297 * 293.67760 * 23 22 5 29 29 O 1.35740 * 120.07714 * 6.66742 * 28 23 22 30 30 H 1.08995 * 109.47231 * 300.38739 * 1 2 3 31 31 H 1.09008 * 109.46801 * 60.39092 * 1 2 3 32 32 H 1.09001 * 109.47163 * 180.38180 * 1 2 3 33 33 H 1.09002 * 109.46974 * 179.60986 * 3 2 1 34 34 H 1.08992 * 109.47077 * 299.61065 * 3 2 1 35 35 H 1.09000 * 109.46558 * 59.60960 * 3 2 1 36 36 H 1.09008 * 109.12246 * 61.73667 * 4 2 1 37 37 H 1.09000 * 109.12511 * 180.82395 * 4 2 1 38 38 H 0.97004 * 119.99859 * 5.26587 * 8 6 5 39 39 H 1.08000 * 126.03179 * 0.03882 * 10 9 8 40 40 H 1.07999 * 126.14127 * 180.02562 * 11 10 9 41 41 H 0.96997 * 119.99857 * 180.02562 * 16 15 13 42 42 H 1.09003 * 110.04842 * 320.38126 * 22 5 4 43 43 H 1.09007 * 109.47570 * 199.72243 * 22 5 4 44 44 H 1.08000 * 120.14814 * 356.50429 * 24 23 22 45 45 H 1.07998 * 119.98504 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.85393 * 180.75306 * 26 25 24 47 47 H 1.08002 * 120.09818 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4448 0.0000 4 6 2.0340 -0.7093 -1.2482 5 7 1.5414 -2.0865 -1.3115 6 6 0.7274 -2.4618 -2.3179 7 8 0.3325 -1.6378 -3.1199 8 7 0.3512 -3.7507 -2.4354 9 6 -0.4016 -4.1611 -3.5388 10 6 -0.8338 -3.3371 -4.5955 11 6 -1.5311 -4.1035 -5.4622 12 7 -1.5428 -5.3769 -4.9738 13 6 -2.1475 -6.4606 -5.5591 14 1 -2.6054 -6.3632 -6.5324 15 6 -2.1707 -7.6835 -4.8996 16 7 -1.5299 -7.8285 -3.7624 17 14 -3.1134 -9.1210 -5.6304 18 1 -2.1873 -9.9680 -6.4242 19 1 -3.7091 -9.9297 -4.5366 20 1 -4.1932 -8.6082 -6.5115 21 7 -0.8238 -5.3836 -3.7716 22 6 1.9371 -3.0647 -0.2787 23 6 1.0730 -2.8430 0.9456 24 6 0.1919 -3.8140 1.3685 25 6 -0.5357 -3.6209 2.5301 26 6 -0.3766 -2.4579 3.2612 27 6 0.4954 -1.4773 2.8294 28 6 1.2101 -1.6586 1.6538 29 8 2.0042 -0.6675 1.1745 30 1 -0.3633 0.5198 0.8864 31 1 -0.3633 0.5078 -0.8936 32 1 -0.3633 -1.0276 0.0068 33 1 3.1235 1.4497 0.0070 34 1 1.6736 1.9550 -0.8934 35 1 1.6621 1.9589 0.8865 36 1 1.6922 -0.1670 -2.1298 37 1 3.1239 -0.7202 -1.2373 38 1 0.6030 -4.3935 -1.7539 39 1 -0.6415 -2.2791 -4.6956 40 1 -1.9952 -3.7684 -6.3779 41 1 -1.5457 -8.6822 -3.3023 42 1 2.9859 -2.9270 -0.0158 43 1 1.7825 -4.0753 -0.6572 44 1 0.0691 -4.7215 0.7961 45 1 -1.2280 -4.3789 2.8656 46 1 -0.9368 -2.3156 4.1736 47 1 0.6169 -0.5700 3.4026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585141661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = 54.315668 kcal Electronic energy + Delta-G solvation = -32600.888072 eV Core-core repulsion = 28365.367502 eV Total energy + Delta-G solvation = -4235.520570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39538 -41.51893 -40.43005 -38.88965 -36.71202 -36.15814 -35.07657 -34.44397 -32.40333 -31.65258 -30.78767 -30.28064 -28.40025 -28.00356 -27.19174 -26.28546 -23.76810 -23.21916 -22.31697 -22.20832 -21.17531 -20.42835 -19.66619 -18.95638 -18.39397 -17.98492 -17.26276 -17.05296 -16.74419 -16.59912 -16.37500 -16.05778 -15.66418 -15.53528 -15.43578 -14.99885 -14.93830 -14.42112 -14.31263 -14.03302 -13.69148 -13.50853 -13.40827 -13.28044 -13.07446 -13.04828 -12.94353 -12.90609 -12.86329 -12.80701 -12.55341 -12.32519 -12.08152 -12.03065 -11.81448 -11.19193 -11.06515 -10.93647 -10.67785 -9.98293 -9.83371 -9.46250 -9.22924 -9.20976 -8.45760 -6.19326 0.12424 0.31037 1.29256 1.33449 1.42445 1.57667 1.66719 1.88892 2.14190 2.30900 2.53262 2.65365 2.99402 3.09907 3.23387 3.55182 3.70144 3.75610 3.82054 3.89844 4.06453 4.19236 4.24123 4.37616 4.43942 4.49727 4.51280 4.58864 4.61423 4.63537 4.71842 4.75896 4.89297 4.96970 5.02240 5.07711 5.13033 5.16176 5.24912 5.34527 5.37719 5.44314 5.47663 5.51572 5.62364 5.67914 5.77443 5.97810 6.37876 6.50661 6.60418 6.88877 7.45868 7.50438 7.69403 8.54431 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002936 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.297722 B = 9535.770331 C =10893.221370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 C -0.134 4.134 4 C 0.107 3.893 5 N -0.614 5.614 6 C 0.712 3.288 7 O -0.598 6.598 8 N -0.632 5.632 9 C 0.201 3.799 10 C -0.303 4.303 11 C -0.056 4.056 12 N -0.169 5.169 13 C -0.358 4.358 14 H 0.136 0.864 15 C -0.001 4.001 16 N -0.821 5.821 17 Si 1.015 2.985 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.249 1.249 21 N -0.318 5.318 22 C 0.151 3.849 23 C -0.153 4.153 24 C -0.105 4.105 25 C -0.135 4.135 26 C -0.099 4.099 27 C -0.140 4.140 28 C 0.109 3.891 29 O -0.325 6.325 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.407 0.593 39 H 0.145 0.855 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.141 0.859 46 H 0.154 0.846 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 11.853 14.220 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.069 3.931 3 C -0.192 4.192 4 C -0.016 4.016 5 N -0.350 5.350 6 C 0.413 3.587 7 O -0.477 6.477 8 N -0.283 5.283 9 C -0.045 4.045 10 C -0.337 4.337 11 C -0.205 4.205 12 N 0.062 4.938 13 C -0.489 4.489 14 H 0.153 0.847 15 C -0.213 4.213 16 N -0.449 5.449 17 Si 0.834 3.166 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.173 1.173 21 N -0.156 5.156 22 C 0.029 3.971 23 C -0.155 4.155 24 C -0.124 4.124 25 C -0.153 4.153 26 C -0.117 4.117 27 C -0.158 4.158 28 C 0.065 3.935 29 O -0.243 6.243 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.244 0.756 39 H 0.162 0.838 40 H 0.195 0.805 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.159 0.841 46 H 0.172 0.828 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.084 11.179 14.281 19.130 hybrid contribution -0.407 -0.491 -0.381 0.742 sum 5.677 10.689 13.901 18.431 Atomic orbital electron populations 1.22377 0.95320 1.01832 1.03082 1.22145 0.93730 0.93813 0.83371 1.21818 1.03000 0.90270 1.04065 1.21962 1.00005 0.80442 0.99176 1.47213 1.50183 1.12300 1.25336 1.15700 0.79403 0.81462 0.82089 1.90784 1.60183 1.51422 1.45303 1.41280 1.54723 1.09102 1.23175 1.19240 1.00924 0.93308 0.91026 1.21154 1.13790 1.00791 0.97920 1.22677 1.09439 0.85039 1.03363 1.44715 1.30303 1.06166 1.12577 1.20545 1.35899 0.87497 1.04952 0.84675 1.26740 0.96905 1.01937 0.95714 1.70362 1.34351 1.25695 1.14513 0.84634 0.78199 0.75658 0.78083 1.19031 1.19940 1.17255 1.78127 1.18580 1.15432 1.03426 1.20954 0.99431 0.92229 0.84498 1.20759 1.00216 0.96039 0.98472 1.21101 0.95400 0.98756 0.97120 1.21476 0.99990 0.98845 0.94966 1.21378 0.97346 0.92605 1.00334 1.21485 0.95650 1.01192 0.97495 1.18515 0.93046 0.87785 0.94180 1.86147 1.46068 1.47683 1.44390 0.90747 0.91514 0.94241 0.90182 0.89470 0.90488 0.88436 0.88589 0.75562 0.83756 0.80509 0.91466 0.86766 0.89616 0.85822 0.84122 0.82813 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 7.45 71.98 0.54 -3.59 16 2 C 0.11 2.25 1.09 -11.07 -0.01 2.24 16 3 C -0.13 -1.93 8.81 71.98 0.63 -1.30 16 4 C 0.11 2.58 4.93 86.12 0.42 3.01 16 5 N -0.61 -18.00 2.02 -841.61 -1.70 -19.70 16 6 C 0.71 27.89 8.23 179.05 1.47 29.36 16 7 O -0.60 -26.86 12.79 -3.98 -0.05 -26.91 16 8 N -0.63 -27.09 5.32 -321.15 -1.71 -28.79 16 9 C 0.20 10.58 8.10 133.51 1.08 11.66 16 10 C -0.30 -15.82 9.60 22.17 0.21 -15.61 16 11 C -0.06 -2.86 11.45 83.26 0.95 -1.91 16 12 N -0.17 -9.61 3.73 -190.64 -0.71 -10.32 16 13 C -0.36 -19.36 10.23 84.03 0.86 -18.50 16 14 H 0.14 6.49 7.84 -2.91 -0.02 6.46 16 15 C 0.00 -0.07 5.50 84.94 0.47 0.39 16 16 N -0.82 -45.85 11.83 21.66 0.26 -45.59 16 17 Si 1.01 38.67 29.55 68.60 2.03 40.70 16 18 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 21 N -0.32 -18.52 10.44 -54.36 -0.57 -19.08 16 22 C 0.15 3.75 5.68 85.66 0.49 4.24 16 23 C -0.15 -3.81 4.50 -19.62 -0.09 -3.90 16 24 C -0.11 -2.59 9.70 22.20 0.22 -2.38 16 25 C -0.13 -2.82 10.05 22.32 0.22 -2.59 16 26 C -0.10 -1.78 10.03 22.26 0.22 -1.55 16 27 C -0.14 -2.75 9.92 22.38 0.22 -2.53 16 28 C 0.11 2.53 4.07 22.50 0.09 2.63 16 29 O -0.33 -7.29 9.53 -90.64 -0.86 -8.15 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 32 H 0.04 1.19 5.88 -2.39 -0.01 1.18 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 2.62 6.89 -2.38 -0.02 2.60 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.41 15.59 6.34 -92.71 -0.59 15.00 16 39 H 0.14 7.41 5.91 -2.91 -0.02 7.39 16 40 H 0.18 7.59 8.06 -2.91 -0.02 7.57 16 41 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.09 2.15 5.62 -2.38 -0.01 2.14 16 44 H 0.12 3.10 8.00 -2.91 -0.02 3.08 16 45 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -74.30 379.90 5.11 -69.19 By element: Atomic # 1 Polarization: 48.57 SS G_CDS: 0.43 Total: 49.00 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 8.01 Total: -0.33 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -4.43 Total: -123.49 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.91 Total: -35.06 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -74.30 5.11 -69.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585141661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.504 kcal (2) G-P(sol) polarization free energy of solvation -74.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds