Wall clock time and date at job start Tue Mar 31 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46775 * 2 1 4 4 O 1.42895 * 109.47227 * 119.99654 * 2 1 3 5 5 C 1.42898 * 113.99832 * 90.00269 * 4 2 1 6 6 C 1.50702 * 109.47300 * 180.02562 * 5 4 2 7 7 N 1.28869 * 124.76414 * 90.00019 * 6 5 4 8 8 C 1.32485 * 117.11191 * 179.97438 * 7 6 5 9 9 C 1.48379 * 122.95748 * 180.02562 * 8 7 6 10 10 C 1.35406 * 126.63752 * 179.68839 * 9 8 7 11 11 N 1.36814 * 109.73009 * 179.83105 * 10 9 8 12 12 C 1.46502 * 124.95122 * 180.14448 * 11 10 9 13 13 C 1.50697 * 109.47281 * 265.34536 * 12 11 10 14 14 H 1.08006 * 119.99676 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00062 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00317 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99780 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47008 * 90.00206 * 17 15 13 19 19 H 1.48500 * 109.46839 * 209.99837 * 17 15 13 20 20 H 1.48496 * 109.47018 * 329.99732 * 17 15 13 21 21 C 1.37753 * 110.09502 * 0.44151 * 11 10 9 22 22 C 1.39169 * 133.31580 * 179.73647 * 21 11 10 23 23 C 1.37749 * 119.78673 * 180.02562 * 22 21 11 24 24 C 1.38808 * 120.64349 * 0.02562 * 23 22 21 25 25 C 1.36678 * 120.48985 * 359.97438 * 24 23 22 26 26 C 1.39451 * 119.78815 * 0.02562 * 25 24 23 27 27 C 1.34804 * 114.09356 * 359.97438 * 8 7 6 28 28 S 1.70913 * 124.76231 * 269.96035 * 6 5 4 29 29 H 1.09003 * 109.46749 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47247 * 299.99761 * 1 2 3 31 31 H 1.08999 * 109.47176 * 59.99937 * 1 2 3 32 32 H 1.08998 * 109.47247 * 240.00239 * 2 1 3 33 33 H 1.08997 * 109.47273 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47320 * 299.99975 * 3 2 1 35 35 H 1.09001 * 109.47668 * 59.99720 * 3 2 1 36 36 H 1.09001 * 109.47526 * 59.99783 * 5 4 2 37 37 H 1.09001 * 109.47536 * 299.99965 * 5 4 2 38 38 H 1.08001 * 125.12778 * 359.97438 * 10 9 8 39 39 H 1.09003 * 109.46956 * 25.34061 * 12 11 10 40 40 H 1.09003 * 109.47178 * 145.34337 * 12 11 10 41 41 H 0.97001 * 119.99985 * 180.02562 * 16 15 13 42 42 H 1.08004 * 120.10628 * 0.04502 * 22 21 11 43 43 H 1.07998 * 119.67737 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.75617 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.10458 * 180.02562 * 25 24 23 46 46 H 1.08003 * 126.05389 * 179.74131 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2002 -2.0781 0.9886 6 6 2.7004 -2.6833 2.2749 7 7 1.9460 -3.1549 3.2073 8 6 2.5482 -3.6533 4.2770 9 6 1.8066 -4.2295 5.4257 10 6 2.3435 -4.7622 6.5489 11 7 1.3447 -5.1869 7.3818 12 6 1.5522 -5.8129 8.6900 13 6 1.5387 -7.3121 8.5373 14 1 1.3900 -7.7543 7.5632 15 6 1.7152 -8.1190 9.6412 16 7 1.8958 -7.5805 10.8274 17 14 1.6978 -9.9774 9.4520 18 1 3.0766 -10.4609 9.1873 19 1 1.1872 -10.5973 10.7011 20 1 0.8157 -10.3512 8.3174 21 6 0.1157 -4.9462 6.8081 22 6 -1.1927 -5.1830 7.2192 23 6 -2.2423 -4.8210 6.4039 24 6 -2.0086 -4.2217 5.1738 25 6 -0.7313 -3.9804 4.7515 26 6 0.3457 -4.3391 5.5615 27 6 3.8940 -3.5920 4.2295 28 16 4.3478 -2.8416 2.7016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 2.9320 -2.2466 0.1986 37 1 1.2539 -2.5433 0.7125 38 1 3.4007 -4.8380 6.7567 39 1 2.5137 -5.4976 9.0952 40 1 0.7549 -5.5096 9.3685 41 1 2.0203 -8.1483 11.6039 42 1 -1.3844 -5.6488 8.1745 43 1 -3.2569 -5.0052 6.7248 44 1 -2.8422 -3.9440 4.5458 45 1 -0.5566 -3.5134 3.7934 46 1 4.5734 -3.9371 4.9948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594660138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:40 Heat of formation + Delta-G solvation = 47.635788 kcal Electronic energy + Delta-G solvation = -27903.221544 eV Core-core repulsion = 24077.871432 eV Total energy + Delta-G solvation = -3825.350112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.74660 -39.48676 -38.46868 -36.46276 -33.77638 -33.27738 -32.06135 -30.52875 -29.58929 -28.41517 -27.58559 -27.19331 -26.65873 -24.04960 -22.89740 -21.83185 -21.63294 -20.99041 -20.09373 -18.95190 -17.69643 -17.12283 -16.77495 -16.04952 -15.77658 -15.68042 -15.44169 -14.88811 -14.61362 -14.48335 -14.17157 -13.89864 -13.72820 -13.41156 -13.15087 -13.02157 -12.97854 -12.65051 -12.45158 -12.37808 -12.08901 -12.00321 -11.74397 -11.71631 -11.47301 -11.29438 -11.04463 -11.02008 -10.85028 -10.82344 -10.41032 -10.12492 -9.92351 -9.92144 -9.48440 -9.31536 -9.27073 -8.71940 -8.47854 -7.54572 -6.80767 -6.30184 -4.41628 0.69551 1.43724 1.71121 1.83661 2.20376 2.63838 3.16505 3.23508 3.28230 3.38672 3.67566 3.86257 4.16861 4.24858 4.54827 4.58619 4.72105 4.80972 4.86402 5.01032 5.12237 5.16424 5.21573 5.29371 5.39398 5.43891 5.48247 5.51065 5.53164 5.53806 5.63964 5.81324 5.86322 5.94425 6.06632 6.12126 6.23919 6.37424 6.48070 6.64995 6.74424 6.89766 6.91907 7.07140 7.20214 7.34066 7.50091 7.60220 7.80697 7.90552 7.99965 8.06945 8.66330 9.26458 10.74359 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.002456 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.550485 B =11397.783405 C =12739.417922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.373 6.373 5 C 0.144 3.856 6 C 0.041 3.959 7 N -0.441 5.441 8 C 0.178 3.822 9 C -0.158 4.158 10 C 0.108 3.892 11 N -0.444 5.444 12 C 0.234 3.766 13 C -0.542 4.542 14 H 0.065 0.935 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.102 3.898 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.158 4.158 25 C -0.069 4.069 26 C -0.084 4.084 27 C -0.272 4.272 28 S 0.117 5.883 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.165 0.835 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.268 0.732 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 13.288 -19.740 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.292 6.292 5 C 0.064 3.936 6 C -0.238 4.238 7 N -0.157 5.157 8 C 0.048 3.952 9 C -0.168 4.168 10 C -0.027 4.027 11 N -0.119 5.119 12 C 0.116 3.884 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.005 4.005 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.177 4.177 25 C -0.088 4.088 26 C -0.089 4.089 27 C -0.411 4.411 28 S 0.371 5.629 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.182 0.818 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.640 13.470 -19.580 23.822 hybrid contribution -0.392 -1.657 0.710 1.844 sum 1.248 11.813 -18.870 22.298 Atomic orbital electron populations 1.22311 0.95705 1.02719 1.02680 1.22116 0.93951 0.93771 0.87764 1.21865 1.01809 0.94381 1.02651 1.88028 1.86642 1.18592 1.35915 1.20741 1.00532 0.82257 0.90030 1.26321 0.93236 1.04094 1.00119 1.66067 1.38262 1.10870 1.00476 1.17969 0.88467 0.97093 0.91677 1.17707 0.90949 1.13644 0.94479 1.21730 0.94102 0.97138 0.89748 1.44822 1.02967 1.46407 1.17736 1.19772 0.99077 0.93377 0.76132 1.21353 1.51694 0.89939 0.95037 0.91629 1.24943 0.94326 0.99683 0.94776 1.69918 1.47816 1.36105 0.98923 0.86380 0.78608 0.84037 0.77872 1.20294 1.20839 1.19569 1.18276 0.87330 1.01382 0.93541 1.20147 0.89295 1.02757 1.00878 1.20677 0.97687 1.00526 0.94707 1.20503 0.96257 1.03768 0.97198 1.20231 0.90876 0.98757 0.98893 1.18852 0.92030 1.03425 0.94604 1.26837 0.98884 1.12820 1.02526 1.83638 1.10020 1.55879 1.13369 0.92205 0.91525 0.91675 0.92070 0.91947 0.91173 0.91631 0.91196 0.90297 0.81806 0.93329 0.93478 0.92214 0.86013 0.86582 0.87031 0.86062 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.53 37.16 0.35 -0.98 16 2 C 0.08 0.65 3.34 -26.73 -0.09 0.56 16 3 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 4 O -0.37 -4.22 9.97 -35.23 -0.35 -4.58 16 5 C 0.14 1.51 6.32 36.01 0.23 1.74 16 6 C 0.04 0.56 7.00 -13.52 -0.09 0.47 16 7 N -0.44 -7.33 9.70 -8.42 -0.08 -7.41 16 8 C 0.18 3.06 6.71 -84.63 -0.57 2.49 16 9 C -0.16 -3.04 6.28 -103.13 -0.65 -3.69 16 10 C 0.11 2.08 10.85 -16.34 -0.18 1.91 16 11 N -0.44 -9.74 2.76 -115.39 -0.32 -10.06 16 12 C 0.23 5.69 5.74 -5.19 -0.03 5.66 16 13 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 14 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -24.51 13.29 55.43 0.74 -23.78 16 17 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.10 2.20 6.80 -83.99 -0.57 1.63 16 22 C -0.11 -2.20 9.99 -39.41 -0.39 -2.59 16 23 C -0.12 -1.99 10.01 -39.55 -0.40 -2.38 16 24 C -0.16 -2.62 9.98 -39.93 -0.40 -3.02 16 25 C -0.07 -1.27 9.89 -39.69 -0.39 -1.66 16 26 C -0.08 -1.72 6.31 -104.97 -0.66 -2.38 16 27 C -0.27 -3.87 10.86 29.51 0.32 -3.55 16 28 S 0.12 1.39 23.16 -107.50 -2.49 -1.10 16 29 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.16 2.66 7.71 -52.49 -0.40 2.25 16 39 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.12 2.13 7.42 -52.49 -0.39 1.74 16 46 H 0.18 2.13 7.69 -52.48 -0.40 1.73 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -30.46 405.44 -11.61 -42.07 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.61 Total: 2.54 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -3.58 Total: -19.51 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.34 Total: -41.25 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.35 Total: -4.58 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.46 -11.61 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594660138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.709 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds