Wall clock time and date at job start Tue Mar 31 2020 05:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48501 * 109.47363 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46982 * 300.00078 * 3 2 1 6 6 H 1.48506 * 109.47145 * 60.00212 * 3 2 1 7 7 C 1.39906 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00059 * 196.47410 * 7 2 1 9 9 C 1.41152 * 120.00340 * 16.47334 * 7 2 1 10 10 C 1.40868 * 120.16514 * 205.02718 * 9 7 2 11 11 C 1.36378 * 119.82610 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17260 * 0.02562 * 11 10 9 13 13 N 1.39234 * 119.83580 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99990 * 35.24913 * 13 12 11 15 15 O 1.21281 * 120.00167 * 355.51104 * 14 13 12 16 16 C 1.50698 * 120.00069 * 175.22909 * 14 13 12 17 17 C 1.50706 * 109.47225 * 180.27668 * 16 14 13 18 18 C 1.38232 * 119.99965 * 53.17321 * 17 16 14 19 19 C 1.38231 * 119.99984 * 179.76482 * 18 17 16 20 20 C 1.38241 * 119.99808 * 0.50886 * 19 18 17 21 21 C 1.38238 * 119.99758 * 359.74480 * 20 19 18 22 22 C 1.38227 * 119.99791 * 233.44747 * 17 16 14 23 23 C 1.50698 * 109.47103 * 300.27731 * 16 14 13 24 24 C 1.38237 * 120.00313 * 310.20804 * 23 16 14 25 25 C 1.38230 * 120.00172 * 179.76547 * 24 23 16 26 26 C 1.38229 * 120.00156 * 0.50976 * 25 24 23 27 27 C 1.38241 * 120.00023 * 359.74858 * 26 25 24 28 28 C 1.38229 * 119.99550 * 359.97438 * 27 26 25 29 29 C 1.39486 * 120.32807 * 0.24680 * 12 11 10 30 30 C 1.36378 * 120.17162 * 359.44714 * 29 12 11 31 31 H 0.97004 * 120.00181 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.08680 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.91121 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99857 * 215.24930 * 13 12 11 35 35 H 1.09002 * 109.46784 * 60.27765 * 16 14 13 36 36 H 1.08007 * 120.00144 * 0.02562 * 18 17 16 37 37 H 1.08000 * 120.00533 * 180.22667 * 19 18 17 38 38 H 1.08003 * 119.99853 * 179.72109 * 20 19 18 39 39 H 1.08002 * 119.99500 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00539 * 359.97438 * 22 17 16 41 41 H 1.08000 * 119.99426 * 0.02562 * 24 23 16 42 42 H 1.08004 * 120.00245 * 180.23453 * 25 24 23 43 43 H 1.07999 * 120.00626 * 179.72190 * 26 25 24 44 44 H 1.07997 * 119.99998 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99746 * 179.97438 * 28 27 26 46 46 H 1.08002 * 119.91228 * 179.72885 * 29 12 11 47 47 H 1.07995 * 120.08525 * 180.25226 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3963 -1.2125 6 1 1.8840 2.3964 1.2126 7 6 2.0081 -1.2117 -0.0005 8 1 3.0549 -1.2310 0.2647 9 6 1.3458 -2.4088 -0.3477 10 6 1.8232 -3.6456 0.1285 11 6 1.1783 -4.7981 -0.2117 12 6 0.0491 -4.7545 -1.0292 13 7 -0.6036 -5.9355 -1.3726 14 6 -0.6783 -6.9468 -0.4849 15 8 -0.1079 -6.8605 0.5820 16 6 -1.4756 -8.1821 -0.8152 17 6 -1.4038 -9.1497 0.3379 18 6 -1.7367 -8.7316 1.6128 19 6 -1.6755 -9.6204 2.6697 20 6 -1.2713 -10.9246 2.4535 21 6 -0.9334 -11.3412 1.1795 22 6 -0.9996 -10.4538 0.1218 23 6 -2.9125 -7.8012 -1.0627 24 6 -3.5827 -7.0040 -0.1537 25 6 -4.8992 -6.6507 -0.3832 26 6 -5.5489 -7.1032 -1.5162 27 6 -4.8804 -7.9049 -2.4226 28 6 -3.5622 -8.2535 -2.1960 29 6 -0.4262 -3.5341 -1.5092 30 6 0.2044 -2.3727 -1.1726 31 1 -0.4850 0.8401 0.0004 32 1 2.6982 -3.6811 0.7606 33 1 1.5434 -5.7471 0.1523 34 1 -1.0046 -6.0303 -2.2507 35 1 -1.0649 -8.6512 -1.7093 36 1 -2.0486 -7.7115 1.7823 37 1 -1.9391 -9.2947 3.6651 38 1 -1.2192 -11.6178 3.2801 39 1 -0.6172 -12.3601 1.0107 40 1 -0.7357 -10.7794 -0.8736 41 1 -3.0763 -6.6538 0.7336 42 1 -5.4217 -6.0247 0.3251 43 1 -6.5789 -6.8309 -1.6933 44 1 -5.3882 -8.2588 -3.3077 45 1 -3.0400 -8.8801 -2.9039 46 1 -1.2986 -3.5085 -2.1454 47 1 -0.1672 -1.4282 -1.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:59 Heat of formation + Delta-G solvation = 38.094387 kcal Electronic energy + Delta-G solvation = -30317.336722 eV Core-core repulsion = 26394.243345 eV Total energy + Delta-G solvation = -3923.093377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.147 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.70218 -38.90037 -38.67145 -37.17142 -34.46294 -33.93955 -32.87949 -31.15112 -30.77592 -30.26303 -29.55650 -29.00290 -27.12016 -24.82942 -23.13446 -22.24013 -22.13846 -22.04001 -21.20337 -20.47424 -19.41554 -17.43876 -17.24111 -17.00323 -16.55035 -16.18652 -15.67068 -15.25765 -15.05670 -14.74781 -14.57626 -14.33736 -13.92545 -13.83128 -13.59535 -13.29606 -13.11607 -13.04534 -12.77252 -12.54883 -12.42165 -12.29611 -12.08648 -11.82136 -11.55878 -11.31823 -11.16729 -11.11190 -11.03217 -10.98968 -10.76718 -10.71888 -10.03308 -9.59374 -9.38546 -9.17911 -8.99569 -8.95885 -8.86105 -8.70528 -8.57335 -7.52860 -6.98462 -6.74148 -4.30247 1.16004 1.32849 1.43591 1.49878 2.56002 2.97676 3.06800 3.11424 3.12795 3.31478 3.59651 3.73140 3.92405 3.96457 4.60485 4.66760 4.69470 4.74786 4.90175 4.92093 5.02416 5.03763 5.13914 5.17077 5.26321 5.42465 5.53411 5.56408 5.66631 5.71426 5.84201 5.96033 6.00976 6.09590 6.21653 6.35478 6.43451 6.46827 6.47556 6.47808 6.57586 6.67492 6.78800 6.89727 6.95260 7.03845 7.05009 7.20082 7.30081 7.61195 7.74127 7.89620 8.04432 8.28937 8.30720 8.59871 8.76144 8.88815 9.00698 10.17404 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.002664 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.468385 B =10507.883367 C =11864.440725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.217 4.217 11 C -0.076 4.076 12 C -0.008 4.008 13 N -0.643 5.643 14 C 0.507 3.493 15 O -0.519 6.519 16 C -0.029 4.029 17 C -0.061 4.061 18 C -0.075 4.075 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.072 4.072 24 C -0.101 4.101 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.112 4.112 30 C -0.154 4.154 31 H 0.280 0.720 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.394 0.606 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.089 0.911 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -17.042 -3.484 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.238 4.238 11 C -0.096 4.096 12 C -0.100 4.100 13 N -0.285 5.285 14 C 0.292 3.708 15 O -0.396 6.396 16 C -0.050 4.050 17 C -0.061 4.061 18 C -0.093 4.093 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.129 4.129 23 C -0.073 4.073 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.129 4.129 29 C -0.132 4.132 30 C -0.174 4.174 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.228 0.772 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.107 0.893 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.418 -16.818 -2.693 19.463 hybrid contribution 0.052 0.815 -0.382 0.902 sum -9.366 -16.003 -3.075 18.796 Atomic orbital electron populations 1.69846 1.07549 1.29063 1.35394 1.25925 0.94754 1.01349 0.92336 0.86262 0.81007 0.80937 0.78534 1.18387 1.19721 1.20004 1.19600 0.97689 0.91118 1.40206 0.90368 1.17674 0.91346 0.92160 0.88524 1.20666 1.03635 0.92697 1.06756 1.20376 0.93491 0.97905 0.97844 1.17162 0.98032 0.83827 1.11006 1.42889 1.55277 1.14267 1.16097 1.20082 0.81842 0.84284 0.84601 1.90712 1.45359 1.79697 1.23785 1.19284 0.92747 0.94246 0.98758 1.19159 1.00008 0.93350 0.93594 1.21059 0.96960 0.99311 0.91936 1.21127 1.00503 0.93661 0.98926 1.21113 0.99694 0.96142 0.96930 1.21005 1.01238 0.99374 0.92938 1.20937 1.00053 0.92874 0.99077 1.19404 0.93771 0.98616 0.95487 1.21159 0.94743 0.96979 0.99014 1.21153 0.94726 0.99633 0.97732 1.21163 0.99904 0.98047 0.94665 1.21081 0.94637 0.98733 0.99407 1.20997 0.95020 1.00112 0.96814 1.20228 0.99054 0.91808 1.02095 1.20910 0.99166 0.96341 1.00935 0.90947 0.88792 0.87549 0.77238 0.87530 0.85916 0.86195 0.86410 0.86288 0.86282 0.85874 0.85916 0.86160 0.86043 0.85926 0.89302 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.42 10.90 55.55 0.61 -19.82 16 2 C 0.07 1.85 5.16 -17.34 -0.09 1.76 16 3 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.16 9.04 -37.85 -0.34 -12.50 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.11 2.84 5.57 -106.80 -0.60 2.24 16 10 C -0.22 -5.56 9.74 -39.26 -0.38 -5.94 16 11 C -0.08 -1.84 8.61 -39.79 -0.34 -2.18 16 12 C -0.01 -0.18 6.31 -83.57 -0.53 -0.71 16 13 N -0.64 -11.39 5.18 -9.74 -0.05 -11.44 16 14 C 0.51 8.76 5.96 -10.99 -0.07 8.69 16 15 O -0.52 -10.94 11.98 5.56 0.07 -10.87 16 16 C -0.03 -0.38 2.60 -94.07 -0.24 -0.62 16 17 C -0.06 -0.83 4.48 -104.62 -0.47 -1.29 16 18 C -0.07 -1.08 7.50 -39.59 -0.30 -1.38 16 19 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 20 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 21 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.11 -1.31 9.67 -39.59 -0.38 -1.69 16 23 C -0.07 -0.89 4.62 -104.62 -0.48 -1.37 16 24 C -0.10 -1.35 8.34 -39.58 -0.33 -1.68 16 25 C -0.11 -1.34 10.05 -39.59 -0.40 -1.74 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16 29 C -0.11 -2.56 9.90 -39.79 -0.39 -2.96 16 30 C -0.15 -3.95 8.63 -39.26 -0.34 -4.29 16 31 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 32 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 33 H 0.11 2.55 6.21 -52.49 -0.33 2.22 16 34 H 0.39 5.76 8.77 -40.82 -0.36 5.40 16 35 H 0.11 1.13 7.66 -51.93 -0.40 0.73 16 36 H 0.12 1.91 5.40 -52.48 -0.28 1.62 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.11 7.96 -52.49 -0.42 0.69 16 41 H 0.12 1.82 5.80 -52.49 -0.30 1.52 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.97 7.97 -52.48 -0.42 0.55 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -30.74 391.63 -12.32 -43.06 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -5.76 Total: 15.44 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -8.05 Total: -35.87 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.56 Total: -31.26 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.74 -12.32 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.155 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds