Wall clock time and date at job start Tue Mar 31 2020 05:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48501 * 109.47363 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46982 * 300.00078 * 3 2 1 6 6 H 1.48506 * 109.47145 * 60.00212 * 3 2 1 7 7 C 1.39906 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00059 * 196.47410 * 7 2 1 9 9 C 1.41152 * 120.00340 * 16.47334 * 7 2 1 10 10 C 1.40868 * 120.16514 * 205.02718 * 9 7 2 11 11 C 1.36378 * 119.82610 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17260 * 0.02562 * 11 10 9 13 13 N 1.39234 * 119.83580 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99990 * 35.24913 * 13 12 11 15 15 O 1.21281 * 120.00167 * 355.51104 * 14 13 12 16 16 C 1.50698 * 120.00069 * 175.22909 * 14 13 12 17 17 C 1.50706 * 109.47225 * 180.27668 * 16 14 13 18 18 C 1.38232 * 119.99965 * 53.17321 * 17 16 14 19 19 C 1.38231 * 119.99984 * 179.76482 * 18 17 16 20 20 C 1.38241 * 119.99808 * 0.50886 * 19 18 17 21 21 C 1.38238 * 119.99758 * 359.74480 * 20 19 18 22 22 C 1.38227 * 119.99791 * 233.44747 * 17 16 14 23 23 C 1.50698 * 109.47103 * 300.27731 * 16 14 13 24 24 C 1.38237 * 120.00313 * 310.20804 * 23 16 14 25 25 C 1.38230 * 120.00172 * 179.76547 * 24 23 16 26 26 C 1.38229 * 120.00156 * 0.50976 * 25 24 23 27 27 C 1.38241 * 120.00023 * 359.74858 * 26 25 24 28 28 C 1.38229 * 119.99550 * 359.97438 * 27 26 25 29 29 C 1.39486 * 120.32807 * 0.24680 * 12 11 10 30 30 C 1.36378 * 120.17162 * 359.44714 * 29 12 11 31 31 H 0.97004 * 120.00181 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.08680 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.91121 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99857 * 215.24930 * 13 12 11 35 35 H 1.09002 * 109.46784 * 60.27765 * 16 14 13 36 36 H 1.08007 * 120.00144 * 0.02562 * 18 17 16 37 37 H 1.08000 * 120.00533 * 180.22667 * 19 18 17 38 38 H 1.08003 * 119.99853 * 179.72109 * 20 19 18 39 39 H 1.08002 * 119.99500 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00539 * 359.97438 * 22 17 16 41 41 H 1.08000 * 119.99426 * 0.02562 * 24 23 16 42 42 H 1.08004 * 120.00245 * 180.23453 * 25 24 23 43 43 H 1.07999 * 120.00626 * 179.72190 * 26 25 24 44 44 H 1.07997 * 119.99998 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99746 * 179.97438 * 28 27 26 46 46 H 1.08002 * 119.91228 * 179.72885 * 29 12 11 47 47 H 1.07995 * 120.08525 * 180.25226 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3963 -1.2125 6 1 1.8840 2.3964 1.2126 7 6 2.0081 -1.2117 -0.0005 8 1 3.0549 -1.2310 0.2647 9 6 1.3458 -2.4088 -0.3477 10 6 1.8232 -3.6456 0.1285 11 6 1.1783 -4.7981 -0.2117 12 6 0.0491 -4.7545 -1.0292 13 7 -0.6036 -5.9355 -1.3726 14 6 -0.6783 -6.9468 -0.4849 15 8 -0.1079 -6.8605 0.5820 16 6 -1.4756 -8.1821 -0.8152 17 6 -1.4038 -9.1497 0.3379 18 6 -1.7367 -8.7316 1.6128 19 6 -1.6755 -9.6204 2.6697 20 6 -1.2713 -10.9246 2.4535 21 6 -0.9334 -11.3412 1.1795 22 6 -0.9996 -10.4538 0.1218 23 6 -2.9125 -7.8012 -1.0627 24 6 -3.5827 -7.0040 -0.1537 25 6 -4.8992 -6.6507 -0.3832 26 6 -5.5489 -7.1032 -1.5162 27 6 -4.8804 -7.9049 -2.4226 28 6 -3.5622 -8.2535 -2.1960 29 6 -0.4262 -3.5341 -1.5092 30 6 0.2044 -2.3727 -1.1726 31 1 -0.4850 0.8401 0.0004 32 1 2.6982 -3.6811 0.7606 33 1 1.5434 -5.7471 0.1523 34 1 -1.0046 -6.0303 -2.2507 35 1 -1.0649 -8.6512 -1.7093 36 1 -2.0486 -7.7115 1.7823 37 1 -1.9391 -9.2947 3.6651 38 1 -1.2192 -11.6178 3.2801 39 1 -0.6172 -12.3601 1.0107 40 1 -0.7357 -10.7794 -0.8736 41 1 -3.0763 -6.6538 0.7336 42 1 -5.4217 -6.0247 0.3251 43 1 -6.5789 -6.8309 -1.6933 44 1 -5.3882 -8.2588 -3.3077 45 1 -3.0400 -8.8801 -2.9039 46 1 -1.2986 -3.5085 -2.1454 47 1 -0.1672 -1.4282 -1.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000037226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:58 Heat of formation + Delta-G solvation = 24.496377 kcal Electronic energy + Delta-G solvation = -30317.926376 eV Core-core repulsion = 26394.243345 eV Total energy + Delta-G solvation = -3923.683031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.147 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.90254 -40.24229 -39.54717 -38.88651 -36.20147 -35.07290 -34.55470 -32.01861 -31.65071 -31.51182 -31.15702 -30.80165 -28.29999 -26.57132 -24.06373 -23.66492 -23.12061 -22.93103 -22.90102 -22.03059 -20.80275 -19.30984 -18.58940 -18.11044 -17.60691 -17.54255 -17.03665 -16.65193 -16.09086 -15.90642 -15.73698 -15.58072 -15.47803 -14.99217 -14.85710 -14.48124 -14.42320 -14.19701 -14.05451 -13.96300 -13.74578 -13.52026 -13.34188 -13.30218 -13.17625 -12.82403 -12.79288 -12.51067 -12.41209 -11.96689 -11.91732 -11.78239 -11.67899 -11.46475 -11.15669 -10.82298 -10.63361 -9.84557 -9.77994 -9.73686 -9.51693 -9.47440 -8.87414 -8.61649 -6.29575 0.27082 0.48442 0.53364 0.57023 0.79438 1.12701 1.37981 1.42460 1.53554 1.75215 2.20535 2.31488 2.73094 2.83134 2.95984 3.62725 3.71876 3.75376 3.78824 4.02447 4.05022 4.10455 4.21258 4.24605 4.34355 4.36293 4.37954 4.52233 4.61752 4.66113 4.71627 4.77658 4.90598 5.00744 5.09684 5.11222 5.14585 5.15157 5.18214 5.30947 5.42895 5.54269 5.57695 5.59209 5.61998 5.64769 5.65347 5.72813 5.88879 6.01582 6.08353 6.09598 6.14591 6.35799 6.63182 6.72049 6.91488 6.97431 7.37855 8.31854 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.002664 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.468385 B =10507.883367 C =11864.440725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.235 4.235 11 C -0.087 4.087 12 C 0.010 3.990 13 N -0.638 5.638 14 C 0.508 3.492 15 O -0.561 6.561 16 C -0.014 4.014 17 C -0.079 4.079 18 C -0.101 4.101 19 C -0.142 4.142 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.082 4.082 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.106 4.106 29 C -0.111 4.111 30 C -0.170 4.170 31 H 0.289 0.711 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.119 0.881 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.772 -19.283 -5.868 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.073 3.927 10 C -0.256 4.256 11 C -0.107 4.107 12 C -0.083 4.083 13 N -0.282 5.282 14 C 0.295 3.705 15 O -0.439 6.439 16 C -0.035 4.035 17 C -0.079 4.079 18 C -0.119 4.119 19 C -0.160 4.160 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.083 4.083 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.131 4.131 30 C -0.190 4.190 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.250 0.750 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.110 0.890 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.173 0.827 46 H 0.137 0.863 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.602 -19.094 -5.101 22.427 hybrid contribution 0.291 1.321 0.407 1.413 sum -10.311 -17.772 -4.694 21.076 Atomic orbital electron populations 1.69884 1.08933 1.30557 1.35651 1.26770 0.95560 1.04506 0.91217 0.85124 0.79298 0.76016 0.79045 1.18330 1.18446 1.19176 1.19809 0.97815 0.92378 1.42421 0.90847 1.17977 0.92406 0.92758 0.89550 1.20787 1.04150 0.93207 1.07414 1.20465 0.94340 0.97311 0.98590 1.17201 0.96866 0.85450 1.08796 1.42813 1.55044 1.12989 1.17343 1.20918 0.80925 0.85040 0.83569 1.90696 1.47019 1.80656 1.25528 1.19228 0.92682 0.91703 0.99917 1.19326 1.00896 0.94548 0.93178 1.21032 0.98765 0.98597 0.93523 1.21332 1.01209 0.94576 0.98912 1.21463 0.98623 0.95635 0.98336 1.21448 0.99919 1.00754 0.92368 1.21311 0.98999 0.91953 1.00887 1.19369 0.93298 0.99285 0.96321 1.21075 0.95728 0.98757 0.98832 1.21301 0.94375 1.00347 0.98939 1.21491 1.00994 0.97483 0.93823 1.21505 0.94447 0.97558 0.99976 1.21339 0.95391 0.99579 0.96052 1.20458 0.99465 0.91142 1.02019 1.20912 0.99577 0.96948 1.01592 0.90030 0.89011 0.87669 0.75006 0.84071 0.88655 0.85677 0.83838 0.83061 0.83279 0.89027 0.85773 0.83838 0.82796 0.82735 0.86345 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.58 10.90 21.82 0.24 -43.34 16 2 C 0.03 1.75 5.16 85.24 0.44 2.19 16 3 Si 0.98 38.75 29.59 68.60 2.03 40.78 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.49 -27.57 9.04 23.39 0.21 -27.36 16 8 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.08 4.26 5.57 -21.28 -0.12 4.14 16 10 C -0.24 -12.70 9.74 22.48 0.22 -12.48 16 11 C -0.09 -4.36 8.61 22.14 0.19 -4.17 16 12 C 0.01 0.46 6.31 38.57 0.24 0.71 16 13 N -0.64 -22.23 5.18 -303.12 -1.57 -23.80 16 14 C 0.51 17.62 5.96 87.66 0.52 18.14 16 15 O -0.56 -24.59 11.98 -3.03 -0.04 -24.63 16 16 C -0.01 -0.35 2.60 -13.03 -0.03 -0.39 16 17 C -0.08 -2.09 4.48 -19.87 -0.09 -2.18 16 18 C -0.10 -3.07 7.50 22.27 0.17 -2.90 16 19 C -0.14 -3.71 10.05 22.27 0.22 -3.49 16 20 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 21 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 22 C -0.11 -2.36 9.67 22.27 0.22 -2.15 16 23 C -0.08 -1.90 4.62 -19.87 -0.09 -2.00 16 24 C -0.13 -3.45 8.34 22.27 0.19 -3.27 16 25 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 26 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 27 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 28 C -0.11 -1.77 9.67 22.27 0.22 -1.56 16 29 C -0.11 -5.13 9.90 22.14 0.22 -4.91 16 30 C -0.17 -9.06 8.63 22.48 0.19 -8.87 16 31 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 32 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.11 5.25 6.21 -2.91 -0.02 5.23 16 34 H 0.41 11.27 8.77 -92.71 -0.81 10.45 16 35 H 0.14 2.46 7.66 -2.39 -0.02 2.44 16 36 H 0.10 3.33 5.40 -2.91 -0.02 3.31 16 37 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.15 2.11 7.96 -2.91 -0.02 2.09 16 41 H 0.09 3.03 5.80 -2.91 -0.02 3.01 16 42 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 45 H 0.16 1.58 7.97 -2.91 -0.02 1.56 16 46 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 47 H 0.11 6.07 6.14 -2.91 -0.02 6.05 16 Total: -1.00 -71.82 391.63 4.89 -66.93 By element: Atomic # 1 Polarization: 45.29 SS G_CDS: 0.20 Total: 45.49 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 4.03 Total: -61.43 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -1.33 Total: -67.14 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -71.82 4.89 -66.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.423 kcal (2) G-P(sol) polarization free energy of solvation -71.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds