Wall clock time and date at job start Tue Mar 31 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99898 * 2 1 4 4 C 1.38223 * 119.97402 * 359.97438 * 3 2 1 5 5 C 1.39729 * 119.94306 * 179.97438 * 4 3 2 6 6 C 1.47557 * 120.05851 * 179.97438 * 5 4 3 7 7 O 1.21589 * 120.00048 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99716 * 179.72686 * 6 5 4 9 9 C 1.39129 * 119.99559 * 175.63803 * 8 6 5 10 10 C 1.39516 * 119.83244 * 214.95457 * 9 8 6 11 11 C 1.36362 * 120.16454 * 179.71830 * 10 9 8 12 12 C 1.40877 * 119.82612 * 0.55580 * 11 10 9 13 13 C 1.41143 * 120.15754 * 179.69820 * 12 11 10 14 14 H 1.07994 * 120.00078 * 214.86564 * 13 12 11 15 15 C 1.39908 * 120.00010 * 34.86557 * 13 12 11 16 16 N 1.30870 * 119.99985 * 355.39819 * 15 13 12 17 17 Si 1.86800 * 119.99998 * 175.39751 * 15 13 12 18 18 H 1.48498 * 109.46968 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46664 * 120.00162 * 17 15 13 20 20 H 1.48504 * 109.46817 * 239.99857 * 17 15 13 21 21 C 1.40877 * 119.68496 * 359.71863 * 12 11 10 22 22 C 1.36359 * 119.82571 * 359.97438 * 21 12 11 23 23 C 1.39736 * 119.87987 * 0.25547 * 5 4 3 24 24 C 1.38216 * 119.94334 * 359.51533 * 23 5 4 25 25 O 1.36006 * 119.97435 * 180.23197 * 24 23 5 26 26 C 1.42893 * 116.99620 * 0.25266 * 25 24 23 27 27 C 1.39240 * 119.96856 * 180.02562 * 3 2 1 28 28 O 1.35892 * 119.94224 * 0.02562 * 27 3 2 29 29 C 1.42900 * 117.00266 * 89.99612 * 28 27 3 30 30 H 1.09002 * 109.46910 * 59.99776 * 1 2 3 31 31 H 1.08997 * 109.47615 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47284 * 300.00139 * 1 2 3 33 33 H 1.08000 * 120.02565 * 359.97438 * 4 3 2 34 34 H 0.96992 * 120.00243 * 355.63268 * 8 6 5 35 35 H 1.08002 * 119.91338 * 0.02562 * 10 9 8 36 36 H 1.07992 * 120.08156 * 180.25296 * 11 10 9 37 37 H 0.97006 * 120.00469 * 180.02562 * 16 15 13 38 38 H 1.07991 * 120.08829 * 179.97438 * 21 12 11 39 39 H 1.07999 * 119.91512 * 179.97438 * 22 21 12 40 40 H 1.08002 * 120.02282 * 179.72516 * 23 5 4 41 41 H 1.09003 * 109.47491 * 300.00253 * 26 25 24 42 42 H 1.08999 * 109.47422 * 60.00341 * 26 25 24 43 43 H 1.09001 * 109.47188 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47557 * 180.02562 * 29 28 27 45 45 H 1.09001 * 109.46977 * 300.00062 * 29 28 27 46 46 H 1.09005 * 109.47194 * 60.00416 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3706 -0.0005 5 6 1.9281 3.6153 0.0000 6 6 1.1263 4.8541 -0.0011 7 8 -0.0880 4.7923 -0.0030 8 7 1.7401 6.0540 0.0050 9 6 0.9877 7.2206 -0.0878 10 6 1.4942 8.3198 -0.7819 11 6 0.7601 9.4646 -0.8818 12 6 -0.5077 9.5395 -0.2721 13 6 -1.2707 10.7232 -0.3657 14 1 -1.8936 11.0310 0.4611 15 6 -1.2201 11.4979 -1.5297 16 7 -0.3982 11.1748 -2.4955 17 14 -2.3257 12.9933 -1.7052 18 1 -3.1550 13.1419 -0.4824 19 1 -1.4904 14.2077 -1.8869 20 1 -3.2098 12.8194 -2.8856 21 6 -1.0100 8.4275 0.4320 22 6 -0.2671 7.2873 0.5182 23 6 3.3237 3.6848 -0.0043 24 6 4.0723 2.5229 0.0010 25 8 5.4307 2.5898 0.0016 26 6 6.0159 3.8934 0.0021 27 6 3.4370 1.2839 -0.0005 28 8 4.1753 0.1431 -0.0016 29 6 4.5272 -0.4008 -1.2753 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2145 2.3141 -0.0014 34 1 2.7063 6.1042 0.0740 35 1 2.4680 8.2621 -1.2454 36 1 1.1517 10.3132 -1.4229 37 1 -0.3628 11.7120 -3.3024 38 1 -1.9808 8.4780 0.9023 39 1 -0.6506 6.4341 1.0580 40 1 3.8169 4.6456 -0.0084 41 1 5.6963 4.4356 -0.8879 42 1 5.6957 4.4352 0.8921 43 1 7.1023 3.8041 0.0021 44 1 5.1141 -1.3084 -1.1334 45 1 3.6207 -0.6382 -1.8320 46 1 5.1151 0.3289 -1.8322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000093999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:42 Heat of formation + Delta-G solvation = -85.163977 kcal Electronic energy + Delta-G solvation = -30913.292786 eV Core-core repulsion = 26541.712512 eV Total energy + Delta-G solvation = -4371.580275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16147 -39.70826 -39.28169 -37.99036 -37.43230 -36.10699 -34.58120 -33.03561 -30.87502 -29.97721 -29.61516 -28.88228 -28.05623 -27.36150 -26.92134 -25.09133 -23.45388 -22.19913 -21.64108 -20.95434 -20.01972 -18.97071 -17.68607 -17.49066 -17.34096 -16.91481 -16.71952 -16.50302 -15.89857 -15.77552 -15.24358 -15.19951 -15.02077 -14.77813 -14.68913 -14.37800 -13.94179 -13.48037 -13.30325 -13.11862 -12.71997 -12.64225 -12.33577 -12.19379 -12.10934 -11.87085 -11.78999 -11.76237 -11.45431 -11.42216 -11.22388 -11.07227 -10.83458 -10.77190 -10.19279 -10.09721 -9.57440 -9.52447 -9.24462 -8.96119 -8.52797 -8.48298 -7.60987 -6.92740 -6.67209 -4.39467 0.50206 1.08465 2.47137 2.52962 2.85316 3.03798 3.06829 3.11776 3.15757 3.34478 3.44725 3.58496 3.79809 3.94367 4.53965 4.63306 4.67641 4.72828 4.84905 4.88623 4.90171 4.98333 5.02104 5.08698 5.17797 5.20185 5.23997 5.31276 5.47826 5.55627 5.64364 5.83505 6.00339 6.03690 6.13008 6.38791 6.66156 6.73701 6.84771 6.95096 7.01167 7.13666 7.23664 7.42274 7.58168 7.66329 7.79230 8.00836 8.16341 8.25604 8.54343 8.63294 8.87426 8.93583 10.23710 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.002109 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.706187 B =13271.733348 C =14348.469783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.302 6.302 3 C 0.142 3.858 4 C -0.176 4.176 5 C -0.046 4.046 6 C 0.539 3.461 7 O -0.522 6.522 8 N -0.639 5.639 9 C -0.001 4.001 10 C -0.118 4.118 11 C -0.141 4.141 12 C 0.101 3.899 13 C -0.458 4.458 14 H 0.077 0.923 15 C 0.069 3.931 16 N -0.810 5.810 17 Si 0.916 3.084 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.205 4.205 22 C -0.083 4.083 23 C -0.204 4.204 24 C 0.144 3.856 25 O -0.302 6.302 26 C 0.021 3.979 27 C 0.045 3.955 28 O -0.313 6.313 29 C 0.035 3.965 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.150 0.850 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.045 0.955 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.695 -17.368 1.615 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.215 6.215 3 C 0.095 3.905 4 C -0.196 4.196 5 C -0.050 4.050 6 C 0.327 3.673 7 O -0.399 6.399 8 N -0.282 5.282 9 C -0.093 4.093 10 C -0.138 4.138 11 C -0.161 4.161 12 C 0.098 3.902 13 C -0.489 4.489 14 H 0.095 0.905 15 C -0.146 4.146 16 N -0.437 5.437 17 Si 0.741 3.259 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.225 4.225 22 C -0.103 4.103 23 C -0.224 4.224 24 C 0.097 3.903 25 O -0.215 6.215 26 C -0.074 4.074 27 C -0.001 4.001 28 O -0.229 6.229 29 C -0.059 4.059 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.229 0.771 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.157 0.843 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.193 -17.778 1.514 20.549 hybrid contribution -0.275 1.174 -0.543 1.322 sum 9.918 -16.604 0.972 19.365 Atomic orbital electron populations 1.23198 0.77662 1.04240 1.02218 1.86137 1.21776 1.25413 1.88186 1.18805 0.90478 0.85065 0.96102 1.21187 1.01345 0.89977 1.07066 1.19683 0.92478 0.93752 0.99046 1.18051 0.87650 0.83142 0.78501 1.90770 1.13320 1.86752 1.49089 1.42865 1.09668 1.04710 1.70922 1.17247 0.95978 0.86483 1.09638 1.20307 0.99358 0.94250 0.99921 1.21195 0.94196 0.97399 1.03356 1.17754 0.90815 0.91992 0.89615 1.19553 1.23302 1.05357 1.00693 0.90471 1.25900 0.95254 0.98086 0.95396 1.69765 1.31462 1.36619 1.05889 0.86136 0.80161 0.80411 0.79221 1.18544 1.19970 1.19950 1.20812 0.99616 0.93473 1.08648 1.20413 0.93756 0.97516 0.98590 1.21220 0.93544 0.97649 1.10006 1.18749 0.83156 0.92269 0.96104 1.86151 1.16033 1.31058 1.88232 1.23203 0.99288 0.82999 1.01940 1.17102 0.86366 0.84778 1.11820 1.86099 1.70269 1.37516 1.28972 1.22996 0.99653 0.98494 0.84767 0.92097 0.87855 0.92012 0.83200 0.77123 0.89070 0.84949 0.91136 0.88476 0.87362 0.84318 0.92181 0.92091 0.87775 0.88960 0.93620 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.60 10.27 -34.48 -0.35 -3.95 16 3 C 0.14 1.86 6.69 -39.21 -0.26 1.59 16 4 C -0.18 -2.40 8.57 -39.03 -0.33 -2.74 16 5 C -0.05 -0.67 5.87 -104.98 -0.62 -1.28 16 6 C 0.54 9.63 7.60 -12.46 -0.09 9.53 16 7 O -0.52 -11.14 13.73 5.29 0.07 -11.06 16 8 N -0.64 -11.15 5.25 -10.67 -0.06 -11.20 16 9 C 0.00 -0.03 6.31 -83.60 -0.53 -0.56 16 10 C -0.12 -2.62 9.90 -39.78 -0.39 -3.02 16 11 C -0.14 -3.56 8.61 -39.26 -0.34 -3.90 16 12 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 13 C -0.46 -12.03 9.02 -37.85 -0.34 -12.38 16 14 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 15 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 16 N -0.81 -20.73 10.59 55.55 0.59 -20.14 16 17 Si 0.92 18.73 29.56 -169.99 -5.03 13.70 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.21 -5.12 9.74 -39.26 -0.38 -5.51 16 22 C -0.08 -1.96 8.61 -39.78 -0.34 -2.30 16 23 C -0.20 -2.47 8.52 -39.03 -0.33 -2.80 16 24 C 0.14 1.78 6.69 -39.22 -0.26 1.51 16 25 O -0.30 -3.35 10.27 -34.50 -0.35 -3.70 16 26 C 0.02 0.15 9.81 101.05 0.99 1.14 16 27 C 0.05 0.60 5.75 -38.84 -0.22 0.38 16 28 O -0.31 -4.09 9.96 -44.80 -0.45 -4.54 16 29 C 0.04 0.34 11.13 101.05 1.12 1.46 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 33 H 0.15 2.00 5.86 -52.49 -0.31 1.69 16 34 H 0.39 5.35 6.85 -40.82 -0.28 5.07 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 3.44 6.13 -52.49 -0.32 3.11 16 37 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 38 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 39 H 0.11 2.52 6.20 -52.49 -0.33 2.19 16 40 H 0.14 1.34 4.62 -52.49 -0.24 1.10 16 41 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 42 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -32.13 387.84 -7.33 -39.46 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.57 Total: 9.58 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.03 Total: -13.99 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.53 Total: -31.35 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.08 Total: -23.25 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.13 -7.33 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000093999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.703 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds