Wall clock time and date at job start Tue Mar 31 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99898 * 2 1 4 4 C 1.38223 * 119.97402 * 359.97438 * 3 2 1 5 5 C 1.39729 * 119.94306 * 179.97438 * 4 3 2 6 6 C 1.47557 * 120.05851 * 179.97438 * 5 4 3 7 7 O 1.21589 * 120.00048 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99716 * 179.72686 * 6 5 4 9 9 C 1.39129 * 119.99559 * 175.63803 * 8 6 5 10 10 C 1.39516 * 119.83244 * 214.95457 * 9 8 6 11 11 C 1.36362 * 120.16454 * 179.71830 * 10 9 8 12 12 C 1.40877 * 119.82612 * 0.55580 * 11 10 9 13 13 C 1.41143 * 120.15754 * 179.69820 * 12 11 10 14 14 H 1.07994 * 120.00078 * 214.86564 * 13 12 11 15 15 C 1.39908 * 120.00010 * 34.86557 * 13 12 11 16 16 N 1.30870 * 119.99985 * 355.39819 * 15 13 12 17 17 Si 1.86800 * 119.99998 * 175.39751 * 15 13 12 18 18 H 1.48498 * 109.46968 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46664 * 120.00162 * 17 15 13 20 20 H 1.48504 * 109.46817 * 239.99857 * 17 15 13 21 21 C 1.40877 * 119.68496 * 359.71863 * 12 11 10 22 22 C 1.36359 * 119.82571 * 359.97438 * 21 12 11 23 23 C 1.39736 * 119.87987 * 0.25547 * 5 4 3 24 24 C 1.38216 * 119.94334 * 359.51533 * 23 5 4 25 25 O 1.36006 * 119.97435 * 180.23197 * 24 23 5 26 26 C 1.42893 * 116.99620 * 0.25266 * 25 24 23 27 27 C 1.39240 * 119.96856 * 180.02562 * 3 2 1 28 28 O 1.35892 * 119.94224 * 0.02562 * 27 3 2 29 29 C 1.42900 * 117.00266 * 89.99612 * 28 27 3 30 30 H 1.09002 * 109.46910 * 59.99776 * 1 2 3 31 31 H 1.08997 * 109.47615 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47284 * 300.00139 * 1 2 3 33 33 H 1.08000 * 120.02565 * 359.97438 * 4 3 2 34 34 H 0.96992 * 120.00243 * 355.63268 * 8 6 5 35 35 H 1.08002 * 119.91338 * 0.02562 * 10 9 8 36 36 H 1.07992 * 120.08156 * 180.25296 * 11 10 9 37 37 H 0.97006 * 120.00469 * 180.02562 * 16 15 13 38 38 H 1.07991 * 120.08829 * 179.97438 * 21 12 11 39 39 H 1.07999 * 119.91512 * 179.97438 * 22 21 12 40 40 H 1.08002 * 120.02282 * 179.72516 * 23 5 4 41 41 H 1.09003 * 109.47491 * 300.00253 * 26 25 24 42 42 H 1.08999 * 109.47422 * 60.00341 * 26 25 24 43 43 H 1.09001 * 109.47188 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47557 * 180.02562 * 29 28 27 45 45 H 1.09001 * 109.46977 * 300.00062 * 29 28 27 46 46 H 1.09005 * 109.47194 * 60.00416 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3706 -0.0005 5 6 1.9281 3.6153 0.0000 6 6 1.1263 4.8541 -0.0011 7 8 -0.0880 4.7923 -0.0030 8 7 1.7401 6.0540 0.0050 9 6 0.9877 7.2206 -0.0878 10 6 1.4942 8.3198 -0.7819 11 6 0.7601 9.4646 -0.8818 12 6 -0.5077 9.5395 -0.2721 13 6 -1.2707 10.7232 -0.3657 14 1 -1.8936 11.0310 0.4611 15 6 -1.2201 11.4979 -1.5297 16 7 -0.3982 11.1748 -2.4955 17 14 -2.3257 12.9933 -1.7052 18 1 -3.1550 13.1419 -0.4824 19 1 -1.4904 14.2077 -1.8869 20 1 -3.2098 12.8194 -2.8856 21 6 -1.0100 8.4275 0.4320 22 6 -0.2671 7.2873 0.5182 23 6 3.3237 3.6848 -0.0043 24 6 4.0723 2.5229 0.0010 25 8 5.4307 2.5898 0.0016 26 6 6.0159 3.8934 0.0021 27 6 3.4370 1.2839 -0.0005 28 8 4.1753 0.1431 -0.0016 29 6 4.5272 -0.4008 -1.2753 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2145 2.3141 -0.0014 34 1 2.7063 6.1042 0.0740 35 1 2.4680 8.2621 -1.2454 36 1 1.1517 10.3132 -1.4229 37 1 -0.3628 11.7120 -3.3024 38 1 -1.9808 8.4780 0.9023 39 1 -0.6506 6.4341 1.0580 40 1 3.8169 4.6456 -0.0084 41 1 5.6963 4.4356 -0.8879 42 1 5.6957 4.4352 0.8921 43 1 7.1023 3.8041 0.0021 44 1 5.1141 -1.3084 -1.1334 45 1 3.6207 -0.6382 -1.8320 46 1 5.1151 0.3289 -1.8322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000093999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:41 Heat of formation + Delta-G solvation = -104.244857 kcal Electronic energy + Delta-G solvation = -30914.120195 eV Core-core repulsion = 26541.712512 eV Total energy + Delta-G solvation = -4372.407684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18036 -41.13516 -40.11492 -39.18934 -38.83559 -37.17251 -36.27119 -34.79099 -32.01114 -31.48920 -30.92601 -30.52338 -28.78374 -28.08175 -27.90501 -26.69626 -24.69516 -23.36535 -23.10565 -22.55996 -21.48910 -20.10783 -19.27431 -18.68280 -18.56567 -18.09046 -17.69774 -17.36024 -17.29537 -16.94173 -16.52564 -16.24843 -16.05116 -15.91124 -15.73621 -15.62021 -15.53225 -14.90119 -14.57964 -14.28112 -14.10987 -14.02534 -13.63751 -13.47617 -13.29582 -13.21945 -12.90347 -12.80054 -12.78863 -12.57105 -12.50136 -12.48478 -12.27026 -11.81458 -11.76053 -11.40871 -11.27355 -11.06713 -10.94294 -10.68769 -9.51253 -9.48174 -9.41612 -8.76062 -8.52048 -6.34449 -0.57721 0.12529 0.79691 1.13015 1.39990 1.43384 1.54581 1.63828 1.75288 2.10742 2.23941 2.42462 2.56955 2.73818 2.80861 3.44596 3.66788 3.74773 3.76845 3.90972 4.14129 4.24564 4.32605 4.34040 4.38224 4.41521 4.47113 4.48097 4.50109 4.63792 4.69049 4.77247 4.78661 4.89391 4.90369 4.99053 5.06151 5.11680 5.14161 5.31015 5.40110 5.68426 5.87277 5.89798 5.98289 6.10749 6.13308 6.36870 6.52817 6.57670 6.66684 6.95495 6.96499 7.21289 8.40711 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.002109 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.706187 B =13271.733348 C =14348.469783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.312 6.312 3 C 0.139 3.861 4 C -0.179 4.179 5 C -0.061 4.061 6 C 0.544 3.456 7 O -0.561 6.561 8 N -0.631 5.631 9 C 0.016 3.984 10 C -0.114 4.114 11 C -0.159 4.159 12 C 0.069 3.931 13 C -0.495 4.495 14 H 0.073 0.927 15 C 0.028 3.972 16 N -0.839 5.839 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.270 1.270 21 C -0.221 4.221 22 C -0.095 4.095 23 C -0.190 4.190 24 C 0.145 3.855 25 O -0.312 6.312 26 C 0.008 3.992 27 C 0.039 3.961 28 O -0.330 6.330 29 C 0.032 3.968 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.062 0.938 33 H 0.147 0.853 34 H 0.416 0.584 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.164 0.836 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.046 0.954 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 -18.163 1.173 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.225 6.225 3 C 0.092 3.908 4 C -0.199 4.199 5 C -0.064 4.064 6 C 0.333 3.667 7 O -0.441 6.441 8 N -0.276 5.276 9 C -0.078 4.078 10 C -0.134 4.134 11 C -0.179 4.179 12 C 0.066 3.934 13 C -0.525 4.525 14 H 0.091 0.909 15 C -0.184 4.184 16 N -0.467 5.467 17 Si 0.809 3.191 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.195 1.195 21 C -0.241 4.241 22 C -0.115 4.115 23 C -0.210 4.210 24 C 0.098 3.902 25 O -0.225 6.225 26 C -0.086 4.086 27 C -0.007 4.007 28 O -0.247 6.247 29 C -0.062 4.062 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.255 0.745 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.182 0.818 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.065 0.935 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.035 -18.598 1.080 22.178 hybrid contribution -0.681 1.167 -0.383 1.404 sum 11.354 -17.431 0.697 20.814 Atomic orbital electron populations 1.23453 0.76025 1.06123 1.02320 1.86130 1.23460 1.24899 1.88025 1.18815 0.90629 0.85209 0.96155 1.21182 1.01367 0.90138 1.07235 1.19359 0.93142 0.92124 1.01814 1.18516 0.87403 0.83937 0.76838 1.90753 1.15300 1.87370 1.50680 1.42715 1.10580 1.03387 1.70878 1.17279 0.95377 0.87636 1.07470 1.20561 1.00477 0.93165 0.99155 1.21186 0.94345 0.98331 1.04041 1.18067 0.91782 0.92685 0.90825 1.19754 1.24532 1.06580 1.01655 0.90916 1.26732 0.96451 1.00719 0.94533 1.69819 1.32577 1.37863 1.06412 0.85064 0.78190 0.76800 0.79044 1.18449 1.18704 1.19477 1.20929 1.00083 0.93943 1.09113 1.20530 0.94779 0.96975 0.99184 1.21344 0.92373 0.98815 1.08419 1.18745 0.83974 0.91872 0.95647 1.86160 1.15031 1.33410 1.87886 1.23561 1.00504 0.81637 1.02915 1.17389 0.86638 0.85442 1.11260 1.86051 1.70238 1.37539 1.30864 1.23190 1.00085 0.99367 0.83573 0.91935 0.85122 0.91981 0.83518 0.74546 0.85418 0.86130 0.90421 0.88513 0.87348 0.81840 0.91089 0.91126 0.85552 0.86693 0.93513 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.31 -7.13 10.27 -79.43 -0.82 -7.94 16 3 C 0.14 3.50 6.69 22.51 0.15 3.65 16 4 C -0.18 -4.79 8.57 22.63 0.19 -4.60 16 5 C -0.06 -1.68 5.87 -20.10 -0.12 -1.80 16 6 C 0.54 18.88 7.60 86.70 0.66 19.54 16 7 O -0.56 -24.04 13.73 -4.00 -0.05 -24.09 16 8 N -0.63 -20.82 5.25 -305.94 -1.60 -22.43 16 9 C 0.02 0.67 6.31 38.60 0.24 0.91 16 10 C -0.11 -4.92 9.90 22.14 0.22 -4.70 16 11 C -0.16 -8.11 8.61 22.48 0.19 -7.92 16 12 C 0.07 3.74 5.55 -21.27 -0.12 3.63 16 13 C -0.49 -26.87 9.02 23.39 0.21 -26.65 16 14 H 0.07 3.84 7.85 -2.91 -0.02 3.81 16 15 C 0.03 1.40 5.42 85.24 0.46 1.87 16 16 N -0.84 -43.56 10.59 21.82 0.23 -43.33 16 17 Si 0.99 38.68 29.56 68.60 2.03 40.71 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.22 -11.38 9.74 22.48 0.22 -11.16 16 22 C -0.09 -4.52 8.61 22.14 0.19 -4.33 16 23 C -0.19 -4.12 8.52 22.63 0.19 -3.93 16 24 C 0.14 3.26 6.69 22.51 0.15 3.41 16 25 O -0.31 -6.08 10.27 -79.52 -0.82 -6.90 16 26 C 0.01 0.08 9.81 113.37 1.11 1.20 16 27 C 0.04 0.97 5.75 22.75 0.13 1.10 16 28 O -0.33 -8.14 9.96 -68.06 -0.68 -8.81 16 29 C 0.03 0.54 11.13 113.37 1.26 1.81 16 30 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 33 H 0.15 3.93 5.86 -2.91 -0.02 3.91 16 34 H 0.42 9.97 6.85 -92.71 -0.63 9.34 16 35 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.12 6.39 6.13 -2.91 -0.02 6.37 16 37 H 0.29 13.39 8.30 -92.70 -0.77 12.62 16 38 H 0.10 4.81 8.06 -2.92 -0.02 4.78 16 39 H 0.11 5.14 6.20 -2.91 -0.02 5.12 16 40 H 0.16 2.57 4.62 -2.91 -0.01 2.55 16 41 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 42 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 43 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -71.32 387.84 5.17 -66.15 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.41 Total: 33.28 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 6.47 Total: -26.64 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.37 Total: -65.76 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -2.37 Total: -47.75 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -71.32 5.17 -66.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000093999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.095 kcal (2) G-P(sol) polarization free energy of solvation -71.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds