Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 C 1.53001 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47076 * 185.15091 * 4 3 2 6 6 C 1.46902 * 110.99689 * 160.39806 * 5 4 3 7 7 C 1.50700 * 109.47514 * 288.39283 * 6 5 4 8 8 H 1.07999 * 119.99707 * 356.23929 * 7 6 5 9 9 C 1.37874 * 120.00269 * 176.23842 * 7 6 5 10 10 N 1.31516 * 119.99699 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00288 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46871 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47377 * 119.99857 * 11 9 7 14 14 H 1.48504 * 109.46994 * 240.00193 * 11 9 7 15 15 C 1.46893 * 111.00038 * 284.35646 * 5 4 3 16 16 C 1.53001 * 109.47289 * 170.00254 * 15 5 4 17 17 N 1.46498 * 109.47358 * 179.97438 * 16 15 5 18 18 C 1.39404 * 119.99764 * 179.97438 * 17 16 15 19 19 C 1.37650 * 120.15094 * 0.02562 * 18 17 16 20 20 C 1.39634 * 120.78678 * 180.02562 * 19 18 17 21 21 O 1.35879 * 119.64957 * 180.02562 * 20 19 18 22 22 C 1.42903 * 117.00125 * 179.97438 * 21 20 19 23 23 C 1.37684 * 120.70494 * 359.97438 * 20 19 18 24 24 C 1.40348 * 119.76894 * 0.02806 * 23 20 19 25 25 C 1.40844 * 121.22048 * 180.02562 * 24 23 20 26 26 C 1.36562 * 118.16447 * 179.97438 * 25 24 23 27 27 C 1.39332 * 119.91040 * 359.97438 * 26 25 24 28 28 N 1.31071 * 121.73169 * 0.03056 * 27 26 25 29 29 C 1.33587 * 121.36990 * 359.65076 * 28 27 26 30 30 H 1.09003 * 109.46960 * 299.99957 * 1 2 3 31 31 H 1.09002 * 109.47248 * 59.99863 * 1 2 3 32 32 H 1.09001 * 109.47180 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46960 * 240.00043 * 2 1 3 34 34 H 1.09002 * 109.47248 * 120.00137 * 2 1 3 35 35 H 1.09003 * 109.47011 * 60.00074 * 3 2 1 36 36 H 1.09002 * 109.47014 * 300.00280 * 3 2 1 37 37 H 1.08997 * 109.47035 * 65.15275 * 4 3 2 38 38 H 1.09004 * 109.46673 * 305.15193 * 4 3 2 39 39 H 1.09006 * 109.46949 * 48.39505 * 6 5 4 40 40 H 1.09004 * 109.46986 * 168.38962 * 6 5 4 41 41 H 0.97002 * 120.00156 * 179.97438 * 10 9 7 42 42 H 1.08998 * 109.47298 * 49.99892 * 15 5 4 43 43 H 1.09007 * 109.46770 * 289.99941 * 15 5 4 44 44 H 1.08998 * 109.47055 * 299.99867 * 16 15 5 45 45 H 1.09011 * 109.47029 * 59.99381 * 16 15 5 46 46 H 0.97000 * 119.99618 * 0.02562 * 17 16 15 47 47 H 1.08003 * 119.60242 * 359.97438 * 19 18 17 48 48 H 1.09002 * 109.47363 * 180.02562 * 22 21 20 49 49 H 1.09003 * 109.47207 * 299.99505 * 22 21 20 50 50 H 1.08995 * 109.47135 * 60.00353 * 22 21 20 51 51 H 1.08000 * 120.11619 * 180.02562 * 23 20 19 52 52 H 1.08002 * 120.92157 * 359.97438 * 25 24 23 53 53 H 1.07999 * 120.04222 * 180.02562 * 26 25 24 54 54 H 1.08003 * 119.13501 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8218 0.1237 6 6 5.4535 2.8458 0.5873 7 6 5.5075 2.4419 2.0381 8 1 4.5929 2.2512 2.5799 9 6 6.7244 2.3157 2.6738 10 7 7.8381 2.5483 2.0141 11 14 6.7913 1.8143 4.4720 12 1 5.4111 1.6130 4.9814 13 1 7.5579 0.5495 4.6051 14 1 7.4581 2.8825 5.2592 15 6 3.9141 3.5485 -1.1446 16 6 4.1962 5.0348 -0.9161 17 7 4.0515 5.7595 -2.1811 18 6 4.2604 7.1371 -2.2229 19 6 4.6032 7.8196 -1.0777 20 6 4.8150 9.1995 -1.1044 21 8 5.1531 9.8499 0.0398 22 6 5.3570 11.2613 -0.0523 23 6 4.6860 9.9080 -2.2778 24 6 4.3374 9.2388 -3.4612 25 6 4.1977 9.9332 -4.6786 26 6 3.8570 9.2198 -5.7921 27 6 3.6587 7.8436 -5.7019 28 7 3.7897 7.2012 -4.5669 29 6 4.1272 7.8382 -3.4423 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 1.0108 -0.9334 38 1 3.9337 0.8506 0.8394 39 1 6.0458 2.1492 -0.0062 40 1 5.8565 3.8524 0.4751 41 1 8.6943 2.4599 2.4614 42 1 2.8982 3.4249 -1.5196 43 1 4.6212 3.1524 -1.8735 44 1 3.4892 5.4309 -0.1872 45 1 5.2123 5.1584 -0.5410 46 1 3.8097 5.2807 -2.9893 47 1 4.7088 7.2813 -0.1473 48 1 5.6215 11.6550 0.9291 49 1 6.1643 11.4667 -0.7553 50 1 4.4412 11.7387 -0.4008 51 1 4.8524 10.9751 -2.2876 52 1 4.3556 11.0004 -4.7301 53 1 3.7422 9.7216 -6.7415 54 1 3.3900 7.2917 -6.5905 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001600862.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -9.966524 kcal Electronic energy + Delta-G solvation = -31328.824377 eV Core-core repulsion = 27264.463849 eV Total energy + Delta-G solvation = -4064.360528 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.91728 -40.09084 -39.40203 -38.03874 -35.99509 -35.53461 -34.60460 -33.62328 -31.36751 -30.98815 -30.16779 -28.95622 -28.21390 -27.23958 -25.17302 -24.66912 -24.40341 -23.59801 -22.18978 -21.97185 -21.39407 -19.61699 -18.87917 -18.57740 -18.34171 -16.93468 -16.86610 -16.75340 -16.67951 -16.40198 -16.24886 -16.10700 -15.80863 -15.41306 -15.16971 -15.09470 -14.87563 -14.71588 -14.25491 -13.98061 -13.86567 -13.75449 -13.65746 -13.34780 -13.29947 -13.08184 -12.91092 -12.86881 -12.75730 -12.60484 -12.50108 -12.11495 -12.04612 -11.96418 -11.88598 -11.76131 -11.49216 -11.47547 -11.30903 -11.18244 -10.60755 -10.45780 -10.23293 -9.34925 -9.08836 -8.20272 -8.19162 -6.29471 -0.36597 -0.06314 1.12125 1.39338 1.40534 1.53841 2.02717 2.05939 2.39159 2.46192 3.12402 3.17791 3.29746 3.32792 3.81212 3.86609 3.93506 4.01551 4.06577 4.10490 4.14228 4.20720 4.23482 4.33863 4.36006 4.43042 4.43178 4.48105 4.51814 4.62148 4.73998 4.74830 4.80566 4.83652 4.85009 4.87459 4.90184 4.99528 5.02373 5.07761 5.17415 5.18741 5.20413 5.23631 5.35178 5.42292 5.42990 5.48168 5.54367 5.66910 5.82201 6.03589 6.07110 6.31682 6.45881 6.55493 6.66987 6.86766 7.01911 7.39905 8.90745 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.007553 B = 0.002665 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3706.109694 B =10502.295208 C =13095.401168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.101 4.101 4 C 0.065 3.935 5 N -0.537 5.537 6 C 0.205 3.795 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.055 3.945 16 C 0.137 3.863 17 N -0.712 5.712 18 C 0.273 3.727 19 C -0.262 4.262 20 C 0.182 3.818 21 O -0.337 6.337 22 C 0.018 3.982 23 C -0.268 4.268 24 C -0.036 4.036 25 C -0.086 4.086 26 C -0.144 4.144 27 C 0.090 3.910 28 N -0.486 5.486 29 C 0.028 3.972 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.059 0.941 39 H -0.039 1.039 40 H 0.010 0.990 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.023 0.977 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.413 0.587 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.159 0.841 52 H 0.169 0.831 53 H 0.175 0.825 54 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 15.093 -15.047 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.139 4.139 4 C -0.063 4.063 5 N -0.262 5.262 6 C 0.078 3.922 7 C -0.555 4.555 8 H 0.080 0.920 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.205 1.205 15 C -0.073 4.073 16 C 0.012 3.988 17 N -0.338 5.338 18 C 0.163 3.837 19 C -0.290 4.290 20 C 0.135 3.865 21 O -0.250 6.250 22 C -0.076 4.076 23 C -0.290 4.290 24 C -0.038 4.038 25 C -0.112 4.112 26 C -0.163 4.163 27 C -0.083 4.083 28 N -0.194 5.194 29 C -0.096 4.096 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.078 0.922 39 H -0.021 1.021 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.041 0.959 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.250 0.750 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.177 0.823 52 H 0.186 0.814 53 H 0.193 0.807 54 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.757 14.184 -14.121 23.213 hybrid contribution 1.381 -0.016 0.175 1.392 sum -10.376 14.169 -13.946 22.426 Atomic orbital electron populations 1.21721 0.94472 1.02101 1.01960 1.21483 0.96869 0.95797 1.01866 1.21515 0.93049 0.97360 1.01978 1.22034 0.96220 0.88695 0.99331 1.61974 1.22404 1.15152 1.26648 1.19478 0.83496 0.94561 0.94624 1.21449 0.92467 1.45314 0.96247 0.91995 1.25884 0.95191 0.95579 1.02983 1.70098 0.98117 1.50856 1.38453 0.85387 0.78484 0.77783 0.79321 1.18658 1.20429 1.20546 1.22092 1.01482 0.92411 0.91340 1.21210 1.00491 0.91673 0.85386 1.44544 1.73849 1.03935 1.11485 1.17340 0.91021 0.84033 0.91332 1.19692 1.17848 0.93104 0.98315 1.18632 0.91400 0.90725 0.85759 1.86069 1.83235 1.24658 1.31080 1.23395 1.02227 0.76576 1.05423 1.21021 1.16062 1.01129 0.90764 1.18546 0.97168 0.92350 0.95757 1.21737 0.97350 1.01720 0.90409 1.22281 0.98171 0.95024 1.00837 1.23368 0.96326 0.93337 0.95286 1.67623 1.11952 1.40716 0.99128 1.18480 1.07954 0.91440 0.91757 0.92911 0.92276 0.91784 0.91835 0.92648 0.92308 0.91688 0.95963 0.92249 1.02127 0.97176 0.92811 0.88744 0.95901 0.91459 0.93928 0.75047 0.86356 0.86609 0.91356 0.90969 0.82311 0.81399 0.80735 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.12 -3.07 5.93 30.59 0.18 -2.89 16 3 C -0.10 -3.04 5.25 30.59 0.16 -2.88 16 4 C 0.07 2.51 4.83 86.30 0.42 2.92 16 5 N -0.54 -23.22 4.38 -900.78 -3.95 -27.17 16 6 C 0.20 11.02 4.59 85.56 0.39 11.41 16 7 C -0.52 -29.65 8.29 25.60 0.21 -29.43 16 8 H 0.06 3.51 7.77 -2.91 -0.02 3.49 16 9 C 0.00 0.08 5.46 84.65 0.46 0.55 16 10 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 11 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 C 0.06 2.00 4.90 86.30 0.42 2.43 16 16 C 0.14 5.02 4.86 86.38 0.42 5.44 16 17 N -0.71 -23.33 5.71 -338.63 -1.93 -25.27 16 18 C 0.27 9.08 6.69 38.55 0.26 9.34 16 19 C -0.26 -9.05 9.21 22.47 0.21 -8.84 16 20 C 0.18 5.41 6.68 22.48 0.15 5.56 16 21 O -0.34 -9.40 10.49 -92.19 -0.97 -10.37 16 22 C 0.02 0.29 9.80 113.37 1.11 1.40 16 23 C -0.27 -6.42 8.77 22.65 0.20 -6.22 16 24 C -0.04 -0.88 5.74 -21.29 -0.12 -1.00 16 25 C -0.09 -1.42 9.89 22.52 0.22 -1.20 16 26 C -0.14 -1.98 10.03 22.14 0.22 -1.76 16 27 C 0.09 1.66 11.15 85.07 0.95 2.61 16 28 N -0.49 -13.05 9.58 -188.19 -1.80 -14.85 16 29 C 0.03 0.82 6.62 40.46 0.27 1.09 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.77 6.95 -2.39 -0.02 1.76 16 37 H 0.02 0.83 8.00 -2.39 -0.02 0.81 16 38 H 0.06 2.59 7.08 -2.39 -0.02 2.57 16 39 H -0.04 -2.32 8.06 -2.38 -0.02 -2.34 16 40 H 0.01 0.59 5.95 -2.39 -0.01 0.58 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 42 H 0.09 2.90 6.71 -2.39 -0.02 2.88 16 43 H 0.02 0.85 8.12 -2.38 -0.02 0.83 16 44 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 45 H 0.04 1.84 6.08 -2.38 -0.01 1.83 16 46 H 0.41 12.50 7.84 -92.71 -0.73 11.77 16 47 H 0.12 4.48 6.66 -2.91 -0.02 4.46 16 48 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.07 0.92 7.64 -2.39 -0.02 0.90 16 50 H 0.07 0.90 7.64 -2.39 -0.02 0.89 16 51 H 0.16 2.63 6.22 -2.91 -0.02 2.61 16 52 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 53 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 54 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -73.11 431.04 0.67 -72.44 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.17 Total: 28.76 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 6.85 Total: -13.73 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -7.40 Total: -124.33 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.97 Total: -10.37 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -73.11 0.67 -72.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001600862.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.471 kcal (2) G-P(sol) polarization free energy of solvation -73.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds