Wall clock time and date at job start Tue Mar 31 2020 04:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34155 * 125.42790 * 2 1 4 4 C 1.47060 * 105.94509 * 180.02562 * 3 2 1 5 5 C 1.47238 * 127.19796 * 179.97438 * 4 3 2 6 6 O 1.21532 * 119.99829 * 180.02562 * 5 4 3 7 7 O 1.34770 * 120.00007 * 0.02562 * 5 4 3 8 8 C 1.45198 * 117.00149 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47260 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00226 * 354.72886 * 9 8 7 11 11 N 1.34778 * 120.00056 * 174.73549 * 9 8 7 12 12 C 1.46496 * 120.00099 * 184.43961 * 11 9 8 13 13 C 1.50708 * 109.46951 * 269.99427 * 12 11 9 14 14 H 1.08000 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00158 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99808 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00011 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47256 * 59.99910 * 17 15 13 19 19 H 1.48504 * 109.47288 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46863 * 300.00130 * 17 15 13 21 21 C 1.39926 * 120.00025 * 4.43247 * 11 9 8 22 22 C 1.38870 * 120.07002 * 66.72294 * 21 11 9 23 23 C 1.38115 * 119.92970 * 180.23458 * 22 21 11 24 24 C 1.38289 * 120.06777 * 359.46700 * 23 22 21 25 25 C 1.38281 * 120.13840 * 0.55686 * 24 23 22 26 26 C 1.38110 * 120.07561 * 359.69851 * 25 24 23 27 27 C 1.36488 * 105.60194 * 0.23518 * 4 3 2 28 28 C 1.50701 * 125.81159 * 179.75949 * 27 4 3 29 29 O 1.33629 * 108.38133 * 359.61362 * 27 4 3 30 30 H 1.08996 * 109.46617 * 90.00483 * 1 2 3 31 31 H 1.09003 * 109.46997 * 210.00468 * 1 2 3 32 32 H 1.08997 * 109.46753 * 330.00607 * 1 2 3 33 33 H 1.07995 * 127.02875 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.46880 * 59.99894 * 8 7 5 35 35 H 1.08999 * 109.46890 * 300.00477 * 8 7 5 36 36 H 1.08998 * 109.47541 * 29.98881 * 12 11 9 37 37 H 1.08999 * 109.47356 * 149.99851 * 12 11 9 38 38 H 0.97001 * 119.99578 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03439 * 359.95407 * 22 21 11 40 40 H 1.07996 * 119.96626 * 179.72258 * 23 22 21 41 41 H 1.07997 * 119.92676 * 180.25532 * 24 23 22 42 42 H 1.08007 * 119.96373 * 179.72691 * 25 24 23 43 43 H 1.08001 * 120.03925 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47344 * 90.00011 * 28 27 4 45 45 H 1.09001 * 109.46903 * 210.00140 * 28 27 4 46 46 H 1.09005 * 109.46593 * 330.00074 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2847 1.0932 0.0000 4 6 3.6711 0.6027 -0.0006 5 6 4.9015 1.4115 -0.0014 6 8 5.9874 0.8657 -0.0023 7 8 4.8235 2.7569 -0.0011 8 6 6.0768 3.4899 -0.0024 9 6 5.7932 4.9700 -0.0012 10 8 4.6518 5.3688 -0.0958 11 7 6.8081 5.8505 0.1050 12 6 6.5261 7.2847 0.2042 13 6 6.4835 7.8849 -1.1775 14 1 6.6494 7.2605 -2.0430 15 6 6.2317 9.2311 -1.3369 16 7 6.0292 9.9914 -0.2831 17 14 6.1782 9.9750 -3.0495 18 1 5.1112 9.3140 -3.8432 19 1 5.8925 11.4288 -2.9491 20 1 7.4890 9.7736 -3.7178 21 6 8.1310 5.3948 0.1206 22 6 8.6771 4.8049 -1.0117 23 6 9.9816 4.3518 -0.9916 24 6 10.7473 4.4950 0.1511 25 6 10.2062 5.0816 1.2803 26 6 8.9007 5.5320 1.2684 27 6 3.5788 -0.7591 -0.0063 28 6 4.7384 -1.7215 -0.0143 29 8 2.2851 -1.0937 -0.0005 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.9592 2.1229 -0.0004 34 1 6.6488 3.2299 -0.8931 35 1 6.6509 3.2295 0.8868 36 1 5.5639 7.4328 0.6944 37 1 7.3094 7.7695 0.7869 38 1 5.8524 10.9386 -0.3952 39 1 8.0809 4.6964 -1.9057 40 1 10.4055 3.8888 -1.8704 41 1 11.7684 4.1436 0.1630 42 1 10.8054 5.1881 2.1727 43 1 8.4785 5.9897 2.1508 44 1 5.0213 -1.9581 1.0114 45 1 4.4479 -2.6361 -0.5313 46 1 5.5847 -1.2664 -0.5288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003256175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:50 Heat of formation + Delta-G solvation = -72.451380 kcal Electronic energy + Delta-G solvation = -31062.915746 eV Core-core repulsion = 26691.886731 eV Total energy + Delta-G solvation = -4371.029015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87689 -40.42426 -39.67057 -38.11742 -36.34107 -34.88695 -33.45032 -33.21677 -32.74740 -30.78082 -29.97003 -29.51309 -29.01183 -26.78050 -25.53892 -23.79991 -22.92407 -22.50706 -22.09000 -21.50286 -19.69365 -19.13901 -17.82527 -17.31843 -16.91786 -16.60750 -16.50117 -16.25308 -16.02351 -15.60734 -15.30229 -14.95411 -14.40916 -14.28142 -13.99994 -13.89989 -13.77578 -13.62256 -13.20150 -13.13745 -13.11637 -12.95267 -12.79637 -12.66492 -12.53057 -12.32172 -12.16059 -11.83118 -11.51413 -11.25241 -11.09752 -10.88731 -10.67318 -10.64686 -10.60901 -10.20677 -10.02263 -9.80351 -9.42023 -8.72792 -8.67269 -8.65191 -8.46855 -7.76077 -6.09032 -4.13599 0.96541 1.50562 1.60713 1.75841 2.27416 2.58033 2.94511 3.09922 3.31300 3.34871 3.38613 3.74313 3.98285 4.17775 4.41836 4.49061 4.71736 4.77701 4.91614 5.01017 5.12422 5.14792 5.15733 5.19751 5.23229 5.23645 5.26408 5.28235 5.32467 5.42109 5.50754 5.63854 5.67650 5.77835 5.83620 5.97336 6.14736 6.21857 6.35317 6.56276 6.69563 6.72915 6.78800 6.89742 7.14403 7.26784 7.37786 7.72069 7.85926 8.13187 8.19402 8.71809 8.90206 9.50821 10.99432 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.002855 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.070229 B = 9803.344890 C =11993.621163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.159 4.159 4 C -0.227 4.227 5 C 0.541 3.459 6 O -0.513 6.513 7 O -0.322 6.322 8 C 0.052 3.948 9 C 0.515 3.485 10 O -0.502 6.502 11 N -0.555 5.555 12 C 0.251 3.749 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.154 3.846 22 C -0.127 4.127 23 C -0.107 4.107 24 C -0.132 4.132 25 C -0.109 4.109 26 C -0.123 4.123 27 C 0.087 3.913 28 C -0.085 4.085 29 O -0.171 6.171 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -22.037 2.627 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 C -0.178 4.178 4 C -0.229 4.229 5 C 0.387 3.613 6 O -0.404 6.404 7 O -0.236 6.236 8 C -0.025 4.025 9 C 0.300 3.700 10 O -0.375 6.375 11 N -0.285 5.285 12 C 0.134 3.866 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.062 3.938 22 C -0.146 4.146 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.142 4.142 27 C 0.035 3.965 28 C -0.141 4.141 29 O -0.068 6.068 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.184 0.816 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.066 -21.976 2.642 22.160 hybrid contribution 0.288 0.925 -0.991 1.386 sum -0.778 -21.051 1.650 21.130 Atomic orbital electron populations 1.20345 0.84353 1.04317 1.03814 1.22299 0.94122 0.83352 1.07202 1.22774 0.89989 1.00256 1.04818 1.20133 0.92539 0.92107 1.18165 1.19946 0.87888 0.81006 0.72484 1.90811 1.29372 1.72945 1.47249 1.86610 1.34938 1.18501 1.83572 1.22910 0.84210 0.90625 1.04750 1.19731 0.85727 0.86281 0.78228 1.90734 1.20484 1.79535 1.46775 1.45885 1.02066 1.09546 1.71028 1.19486 0.98115 0.70907 0.98114 1.21312 1.49346 0.93656 0.92305 0.92358 1.24901 0.94870 0.96848 0.97273 1.69914 1.48120 1.06246 1.29017 0.86530 0.78630 0.77958 0.84186 1.20073 1.21096 1.20178 1.17794 0.85932 0.96853 0.93215 1.21377 0.95877 1.00189 0.97182 1.20979 0.93651 0.99743 0.98226 1.21086 0.99688 1.00673 0.93544 1.20984 0.94746 0.98558 0.98429 1.21312 0.94695 1.00656 0.97567 1.22752 0.83351 0.93422 0.97014 1.20672 0.91943 0.96783 1.04667 1.83708 1.15758 1.35751 1.71566 0.89878 0.90470 0.88884 0.81557 0.88303 0.88574 0.93345 0.94300 0.92548 0.85884 0.85988 0.86251 0.85951 0.85595 0.88993 0.90022 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.40 36.01 0.37 -0.09 16 2 C -0.02 -0.23 7.28 -35.74 -0.26 -0.49 16 3 C -0.16 -2.01 10.93 -37.44 -0.41 -2.41 16 4 C -0.23 -3.15 6.32 -103.30 -0.65 -3.80 16 5 C 0.54 8.58 7.95 34.39 0.27 8.85 16 6 O -0.51 -8.25 14.64 -19.29 -0.28 -8.53 16 7 O -0.32 -5.74 9.67 -47.35 -0.46 -6.20 16 8 C 0.05 0.91 4.62 36.00 0.17 1.08 16 9 C 0.51 11.10 7.62 -10.99 -0.08 11.02 16 10 O -0.50 -12.84 16.13 -14.04 -0.23 -13.06 16 11 N -0.56 -12.03 2.51 -114.74 -0.29 -12.32 16 12 C 0.25 6.53 5.07 -5.19 -0.03 6.50 16 13 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.15 2.80 4.43 -83.69 -0.37 2.43 16 22 C -0.13 -2.06 8.44 -39.39 -0.33 -2.39 16 23 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 24 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 25 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 26 C -0.12 -1.95 9.64 -39.39 -0.38 -2.33 16 27 C 0.09 1.01 7.38 -34.94 -0.26 0.75 16 28 C -0.08 -0.72 9.89 36.01 0.36 -0.36 16 29 O -0.17 -1.90 10.52 7.71 0.08 -1.81 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.10 1.58 6.97 -51.93 -0.36 1.22 16 35 H 0.10 1.51 8.02 -51.93 -0.42 1.10 16 36 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 37 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 2.00 7.90 -52.49 -0.41 1.58 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.11 1.05 6.49 -51.93 -0.34 0.71 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -34.77 404.38 -8.68 -43.45 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.10 Total: 1.61 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.22 Total: -0.50 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.45 Total: -37.97 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.89 Total: -29.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.77 -8.68 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003256175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.003 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds