Wall clock time and date at job start Tue Mar 31 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46870 * 2 1 4 4 C 1.35975 * 117.00254 * 180.02562 * 3 2 1 5 5 C 1.38547 * 120.08003 * 359.97438 * 4 3 2 6 6 C 1.38252 * 120.01892 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.17985 * 0.02562 * 6 5 4 8 8 C 1.38193 * 120.16706 * 359.97360 * 7 6 5 9 9 C 1.38736 * 119.98099 * 359.77180 * 8 7 6 10 10 N 1.40054 * 120.09354 * 180.25469 * 9 8 7 11 11 C 1.34783 * 119.99649 * 24.80249 * 10 9 8 12 12 O 1.21601 * 119.99786 * 5.57372 * 11 10 9 13 13 C 1.47591 * 119.99650 * 185.57282 * 11 10 9 14 14 C 1.39770 * 120.05561 * 359.72400 * 13 11 10 15 15 C 1.37722 * 120.01940 * 179.71977 * 14 13 11 16 16 C 1.38995 * 120.14136 * 0.55903 * 15 14 13 17 17 O 1.35623 * 119.94670 * 179.69597 * 16 15 14 18 18 C 1.34789 * 117.00021 * 5.17616 * 17 16 15 19 19 H 1.08004 * 119.99755 * 354.98137 * 18 17 16 20 20 C 1.38688 * 120.00572 * 174.98184 * 18 17 16 21 21 N 1.31532 * 120.00536 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00002 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47101 * 89.99791 * 22 20 18 24 24 H 1.48491 * 109.47409 * 210.00229 * 22 20 18 25 25 H 1.48501 * 109.46684 * 329.99926 * 22 20 18 26 26 C 1.39564 * 120.11417 * 359.71668 * 16 15 14 27 27 O 1.35949 * 120.01351 * 180.02562 * 26 16 15 28 28 C 1.42904 * 117.00159 * 179.97438 * 27 26 16 29 29 C 1.38146 * 119.96939 * 0.02562 * 26 16 15 30 30 H 1.09000 * 109.47120 * 300.00024 * 1 2 3 31 31 H 1.09007 * 109.47625 * 60.00175 * 1 2 3 32 32 H 1.08996 * 109.46984 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47091 * 119.99831 * 2 1 3 34 34 H 1.09000 * 109.47003 * 240.00755 * 2 1 3 35 35 H 1.08005 * 119.99410 * 359.97438 * 5 4 3 36 36 H 1.07999 * 119.90794 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.91583 * 179.97438 * 7 6 5 38 38 H 1.07997 * 120.00583 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00278 * 204.81102 * 10 9 8 40 40 H 1.07994 * 119.98792 * 0.02562 * 14 13 11 41 41 H 1.08004 * 119.92345 * 180.25711 * 15 14 13 42 42 H 0.96994 * 120.00124 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.46994 * 59.99785 * 28 27 26 44 44 H 1.08995 * 109.47507 * 180.02562 * 28 27 26 45 45 H 1.09003 * 109.46866 * 300.00351 * 28 27 26 46 46 H 1.08006 * 120.06759 * 180.02562 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5256 -0.0005 5 6 4.1999 0.4281 -0.0005 6 6 5.5703 0.6108 -0.0016 7 6 6.1013 1.8876 -0.0022 8 6 5.2649 2.9876 -0.0022 9 6 3.8887 2.8121 -0.0065 10 7 3.0388 3.9253 -0.0119 11 6 3.4738 5.1028 -0.5028 12 8 4.5659 5.1743 -1.0328 13 6 2.6245 6.3053 -0.3970 14 6 1.3667 6.2230 0.2068 15 6 0.5773 7.3467 0.3103 16 6 1.0235 8.5622 -0.1952 17 8 0.2403 9.6650 -0.0967 18 6 -0.9093 9.5392 0.5956 19 1 -1.2099 8.5726 0.9722 20 6 -1.7064 10.6508 0.8244 21 7 -2.8280 10.5282 1.5005 22 14 -1.1863 12.3229 0.1737 23 1 -1.7386 12.5165 -1.1911 24 1 -1.7028 13.3863 1.0722 25 1 0.2961 12.3949 0.1227 26 6 2.2761 8.6496 -0.8044 27 8 2.7108 9.8396 -1.2977 28 6 4.0031 9.8560 -1.9076 29 6 3.0741 7.5265 -0.9060 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 3.7884 -0.5705 0.0003 36 1 6.2277 -0.2460 -0.0012 37 1 7.1725 2.0254 -0.0026 38 1 5.6825 3.9836 -0.0031 39 1 2.1372 3.8490 0.3377 40 1 1.0158 5.2790 0.5967 41 1 -0.3927 7.2823 0.7809 42 1 -3.3855 11.3056 1.6601 43 1 4.0150 9.1669 -2.7521 44 1 4.2271 10.8637 -2.2573 45 1 4.7530 9.5497 -1.1782 46 1 4.0439 7.5925 -1.3768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003378911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:39 Heat of formation + Delta-G solvation = -73.051582 kcal Electronic energy + Delta-G solvation = -30833.310640 eV Core-core repulsion = 26462.255598 eV Total energy + Delta-G solvation = -4371.055042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88902 -39.98270 -39.14799 -37.88065 -37.45949 -35.97334 -34.72316 -32.61776 -32.06869 -30.60687 -29.80647 -29.77086 -28.75924 -26.83229 -25.63405 -24.45575 -23.33829 -22.20075 -21.98766 -21.54484 -20.09584 -18.85335 -18.20058 -18.07842 -17.20410 -17.08119 -16.37890 -16.04963 -15.57920 -15.56510 -15.36531 -14.99316 -14.75621 -14.59144 -14.36016 -13.96531 -13.84697 -13.80426 -13.52676 -13.44756 -13.34047 -12.87130 -12.49678 -12.36200 -12.26963 -12.19575 -12.00400 -11.74394 -11.65055 -11.33164 -11.29165 -10.99635 -10.94045 -10.89939 -10.63458 -10.45962 -10.31884 -9.71277 -9.52895 -9.03885 -8.68232 -8.19703 -7.84633 -7.30327 -6.61311 -4.23052 1.07437 1.29380 1.53302 1.95597 2.89148 3.10453 3.18145 3.18838 3.22876 3.38007 3.74524 3.79350 4.13224 4.33794 4.51491 4.57510 4.62585 4.73498 4.86322 4.88346 4.92949 4.94562 5.14350 5.24377 5.31917 5.37467 5.39328 5.48056 5.48285 5.50257 5.52893 5.73557 5.74904 5.78182 5.88952 6.01715 6.03270 6.14316 6.33655 6.40213 6.49671 6.57223 6.70988 6.75311 6.90233 7.22008 7.26044 7.46201 7.54899 7.75373 7.95410 8.32196 8.72005 9.32344 10.44152 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.002468 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.742015 B =11342.780651 C =13269.428434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.318 6.318 4 C 0.094 3.906 5 C -0.190 4.190 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.099 4.099 9 C 0.134 3.866 10 N -0.665 5.665 11 C 0.573 3.427 12 O -0.539 6.539 13 C -0.209 4.209 14 C -0.055 4.055 15 C -0.211 4.211 16 C 0.165 3.835 17 O -0.186 6.186 18 C -0.390 4.390 19 H 0.112 0.888 20 C 0.069 3.931 21 N -0.864 5.864 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.252 1.252 26 C 0.047 3.953 27 O -0.307 6.307 28 C 0.029 3.971 29 C -0.103 4.103 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.154 0.846 39 H 0.414 0.586 40 H 0.115 0.885 41 H 0.147 0.853 42 H 0.284 0.716 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 -18.496 -2.330 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.232 6.232 4 C 0.047 3.953 5 C -0.209 4.209 6 C -0.127 4.127 7 C -0.153 4.153 8 C -0.120 4.120 9 C 0.039 3.961 10 N -0.309 5.309 11 C 0.367 3.633 12 O -0.419 6.419 13 C -0.213 4.213 14 C -0.074 4.074 15 C -0.231 4.231 16 C 0.109 3.891 17 O -0.088 6.088 18 C -0.464 4.464 19 H 0.129 0.871 20 C -0.137 4.137 21 N -0.500 5.500 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.176 1.176 26 C 0.002 3.998 27 O -0.222 6.222 28 C -0.067 4.067 29 C -0.124 4.124 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.252 0.748 40 H 0.133 0.867 41 H 0.164 0.836 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.639 -17.666 -2.671 21.324 hybrid contribution -0.255 0.058 -0.040 0.265 sum 11.384 -17.608 -2.712 21.142 Atomic orbital electron populations 1.21790 0.92594 1.02849 1.03862 1.22756 0.95917 0.81806 1.01217 1.86023 1.18545 1.29480 1.89168 1.18656 0.82736 0.92557 1.01361 1.20994 0.94200 0.97295 1.08397 1.20879 0.94159 0.97323 1.00309 1.20984 0.99843 0.91946 1.02573 1.21379 0.90492 1.01251 0.98835 1.17186 0.90437 0.83916 1.04611 1.43346 1.17121 1.08474 1.61957 1.18384 0.86088 0.82519 0.76335 1.90655 1.22156 1.85291 1.43750 1.18839 0.96954 0.92756 1.12794 1.20821 0.92496 0.97694 0.96395 1.20931 1.02819 0.91174 1.08155 1.18615 0.87978 0.87731 0.94729 1.83607 1.30775 1.31115 1.63276 1.20913 0.94696 0.98770 1.32067 0.87093 1.24522 0.94455 0.99548 0.95218 1.69623 1.11471 1.32442 1.36418 0.86175 0.80922 0.81095 0.78957 1.19586 1.20602 1.17596 1.17991 0.92754 0.85665 1.03359 1.86173 1.34131 1.28775 1.73085 1.22953 0.83730 1.03002 0.97004 1.20711 0.99614 0.90570 1.01460 0.91313 0.91344 0.90415 0.92117 0.92142 0.85405 0.85966 0.85687 0.82868 0.74822 0.86679 0.83557 0.90596 0.93136 0.88885 0.93129 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.45 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.62 9.55 -19.66 -0.19 -3.81 16 4 C 0.09 1.15 6.70 -39.07 -0.26 0.89 16 5 C -0.19 -1.92 9.04 -39.46 -0.36 -2.28 16 6 C -0.11 -1.04 10.04 -39.56 -0.40 -1.44 16 7 C -0.13 -1.48 10.04 -39.58 -0.40 -1.88 16 8 C -0.10 -1.36 8.72 -39.41 -0.34 -1.70 16 9 C 0.13 1.88 6.45 -83.52 -0.54 1.35 16 10 N -0.66 -9.62 5.23 -10.67 -0.06 -9.67 16 11 C 0.57 9.63 7.57 -12.44 -0.09 9.54 16 12 O -0.54 -9.97 13.50 5.28 0.07 -9.90 16 13 C -0.21 -3.68 5.88 -104.95 -0.62 -4.29 16 14 C -0.05 -0.93 9.52 -39.20 -0.37 -1.31 16 15 C -0.21 -4.23 9.14 -39.49 -0.36 -4.59 16 16 C 0.17 3.72 6.67 -38.81 -0.26 3.46 16 17 O -0.19 -4.77 8.36 -14.05 -0.12 -4.89 16 18 C -0.39 -10.42 9.94 30.90 0.31 -10.12 16 19 H 0.11 2.96 5.42 -52.48 -0.28 2.67 16 20 C 0.07 1.84 5.49 -17.51 -0.10 1.74 16 21 N -0.86 -23.72 13.96 55.48 0.77 -22.94 16 22 Si 0.90 21.06 28.62 -169.99 -4.86 16.19 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 26 C 0.05 0.97 6.70 -39.12 -0.26 0.71 16 27 O -0.31 -6.11 10.28 -34.19 -0.35 -6.47 16 28 C 0.03 0.41 9.81 101.05 0.99 1.40 16 29 C -0.10 -1.90 8.57 -39.06 -0.33 -2.23 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 35 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.15 2.30 5.79 -52.49 -0.30 2.00 16 39 H 0.41 5.32 6.37 -40.82 -0.26 5.06 16 40 H 0.12 1.57 6.40 -52.49 -0.34 1.23 16 41 H 0.15 2.97 5.61 -52.48 -0.29 2.67 16 42 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.05 0.65 7.66 -51.93 -0.40 0.26 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.65 7.66 -51.93 -0.40 0.26 16 46 H 0.13 2.27 5.87 -52.48 -0.31 1.96 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -31.16 386.23 -7.10 -38.25 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.38 Total: 8.14 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.81 Total: -10.74 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.72 Total: -32.61 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.59 Total: -25.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.16 -7.10 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003378911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.797 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds