Wall clock time and date at job start Tue Mar 31 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46870 * 2 1 4 4 C 1.35975 * 117.00254 * 180.02562 * 3 2 1 5 5 C 1.38547 * 120.08003 * 359.97438 * 4 3 2 6 6 C 1.38252 * 120.01892 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.17985 * 0.02562 * 6 5 4 8 8 C 1.38193 * 120.16706 * 359.97360 * 7 6 5 9 9 C 1.38736 * 119.98099 * 359.77180 * 8 7 6 10 10 N 1.40054 * 120.09354 * 180.25469 * 9 8 7 11 11 C 1.34783 * 119.99649 * 24.80249 * 10 9 8 12 12 O 1.21601 * 119.99786 * 5.57372 * 11 10 9 13 13 C 1.47591 * 119.99650 * 185.57282 * 11 10 9 14 14 C 1.39770 * 120.05561 * 359.72400 * 13 11 10 15 15 C 1.37722 * 120.01940 * 179.71977 * 14 13 11 16 16 C 1.38995 * 120.14136 * 0.55903 * 15 14 13 17 17 O 1.35623 * 119.94670 * 179.69597 * 16 15 14 18 18 C 1.34789 * 117.00021 * 5.17616 * 17 16 15 19 19 H 1.08004 * 119.99755 * 354.98137 * 18 17 16 20 20 C 1.38688 * 120.00572 * 174.98184 * 18 17 16 21 21 N 1.31532 * 120.00536 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00002 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47101 * 89.99791 * 22 20 18 24 24 H 1.48491 * 109.47409 * 210.00229 * 22 20 18 25 25 H 1.48501 * 109.46684 * 329.99926 * 22 20 18 26 26 C 1.39564 * 120.11417 * 359.71668 * 16 15 14 27 27 O 1.35949 * 120.01351 * 180.02562 * 26 16 15 28 28 C 1.42904 * 117.00159 * 179.97438 * 27 26 16 29 29 C 1.38146 * 119.96939 * 0.02562 * 26 16 15 30 30 H 1.09000 * 109.47120 * 300.00024 * 1 2 3 31 31 H 1.09007 * 109.47625 * 60.00175 * 1 2 3 32 32 H 1.08996 * 109.46984 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47091 * 119.99831 * 2 1 3 34 34 H 1.09000 * 109.47003 * 240.00755 * 2 1 3 35 35 H 1.08005 * 119.99410 * 359.97438 * 5 4 3 36 36 H 1.07999 * 119.90794 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.91583 * 179.97438 * 7 6 5 38 38 H 1.07997 * 120.00583 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00278 * 204.81102 * 10 9 8 40 40 H 1.07994 * 119.98792 * 0.02562 * 14 13 11 41 41 H 1.08004 * 119.92345 * 180.25711 * 15 14 13 42 42 H 0.96994 * 120.00124 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.46994 * 59.99785 * 28 27 26 44 44 H 1.08995 * 109.47507 * 180.02562 * 28 27 26 45 45 H 1.09003 * 109.46866 * 300.00351 * 28 27 26 46 46 H 1.08006 * 120.06759 * 180.02562 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5256 -0.0005 5 6 4.1999 0.4281 -0.0005 6 6 5.5703 0.6108 -0.0016 7 6 6.1013 1.8876 -0.0022 8 6 5.2649 2.9876 -0.0022 9 6 3.8887 2.8121 -0.0065 10 7 3.0388 3.9253 -0.0119 11 6 3.4738 5.1028 -0.5028 12 8 4.5659 5.1743 -1.0328 13 6 2.6245 6.3053 -0.3970 14 6 1.3667 6.2230 0.2068 15 6 0.5773 7.3467 0.3103 16 6 1.0235 8.5622 -0.1952 17 8 0.2403 9.6650 -0.0967 18 6 -0.9093 9.5392 0.5956 19 1 -1.2099 8.5726 0.9722 20 6 -1.7064 10.6508 0.8244 21 7 -2.8280 10.5282 1.5005 22 14 -1.1863 12.3229 0.1737 23 1 -1.7386 12.5165 -1.1911 24 1 -1.7028 13.3863 1.0722 25 1 0.2961 12.3949 0.1227 26 6 2.2761 8.6496 -0.8044 27 8 2.7108 9.8396 -1.2977 28 6 4.0031 9.8560 -1.9076 29 6 3.0741 7.5265 -0.9060 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 3.7884 -0.5705 0.0003 36 1 6.2277 -0.2460 -0.0012 37 1 7.1725 2.0254 -0.0026 38 1 5.6825 3.9836 -0.0031 39 1 2.1372 3.8490 0.3377 40 1 1.0158 5.2790 0.5967 41 1 -0.3927 7.2823 0.7809 42 1 -3.3855 11.3056 1.6601 43 1 4.0150 9.1669 -2.7521 44 1 4.2271 10.8637 -2.2573 45 1 4.7530 9.5497 -1.1782 46 1 4.0439 7.5925 -1.3768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003378911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:38 Heat of formation + Delta-G solvation = -91.676354 kcal Electronic energy + Delta-G solvation = -30834.118270 eV Core-core repulsion = 26462.255598 eV Total energy + Delta-G solvation = -4371.862673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04234 -41.37161 -40.34993 -39.48763 -38.37172 -37.50583 -35.88790 -34.53575 -32.71029 -31.84783 -31.33549 -30.83848 -29.84259 -28.08418 -27.44073 -25.27908 -24.62058 -23.50032 -22.97172 -22.78809 -21.37636 -20.11756 -19.87667 -19.32634 -18.62599 -18.23492 -17.39286 -17.10358 -17.05233 -16.84006 -16.57768 -16.31637 -15.93251 -15.89107 -15.60527 -15.51544 -15.46274 -15.05353 -14.80977 -14.34374 -14.32317 -14.27033 -13.90625 -13.59801 -13.37292 -13.23833 -13.06409 -12.88602 -12.84794 -12.65991 -12.55487 -12.28876 -12.10079 -12.04959 -11.98240 -11.64171 -11.58315 -11.51201 -10.96829 -10.86651 -9.76897 -9.57542 -9.01734 -8.73965 -8.55768 -6.24654 -0.23057 0.36464 0.39635 0.44617 1.31542 1.33594 1.53015 1.77464 1.91414 2.22918 2.26438 2.41854 2.68077 2.81154 2.87429 3.03293 3.60282 3.85986 3.88303 3.96863 4.02939 4.09729 4.20405 4.23839 4.26830 4.38475 4.39555 4.40166 4.42948 4.48995 4.55594 4.69514 4.71535 4.78344 4.94045 4.97047 4.98032 5.11058 5.20151 5.27464 5.32336 5.33054 5.47889 5.53986 5.60336 5.63604 5.86249 5.92481 6.34343 6.43255 6.44543 6.77764 7.02709 7.48401 8.54104 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.012737 B = 0.002468 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.742015 B =11342.780651 C =13269.428434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.335 6.335 4 C 0.091 3.909 5 C -0.188 4.188 6 C -0.096 4.096 7 C -0.140 4.140 8 C -0.117 4.117 9 C 0.097 3.903 10 N -0.653 5.653 11 C 0.574 3.426 12 O -0.555 6.555 13 C -0.189 4.189 14 C -0.048 4.048 15 C -0.208 4.208 16 C 0.130 3.870 17 O -0.220 6.220 18 C -0.402 4.402 19 H 0.096 0.904 20 C 0.021 3.979 21 N -0.908 5.908 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.266 1.266 26 C 0.048 3.952 27 O -0.335 6.335 28 C 0.019 3.981 29 C -0.101 4.101 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.420 0.580 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.287 0.713 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.062 0.938 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 -21.817 -2.987 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.250 6.250 4 C 0.044 3.956 5 C -0.207 4.207 6 C -0.114 4.114 7 C -0.159 4.159 8 C -0.137 4.137 9 C 0.003 3.997 10 N -0.297 5.297 11 C 0.366 3.634 12 O -0.436 6.436 13 C -0.193 4.193 14 C -0.067 4.067 15 C -0.228 4.228 16 C 0.078 3.922 17 O -0.126 6.126 18 C -0.477 4.477 19 H 0.114 0.886 20 C -0.179 4.179 21 N -0.547 5.547 22 Si 0.782 3.218 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.190 1.190 26 C 0.002 3.998 27 O -0.250 6.250 28 C -0.075 4.075 29 C -0.121 4.121 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.151 0.849 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.081 0.919 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.079 -21.052 -3.333 25.544 hybrid contribution -0.616 0.601 0.077 0.864 sum 13.463 -20.451 -3.256 24.700 Atomic orbital electron populations 1.21825 0.92014 1.04139 1.03003 1.23053 0.96422 0.80456 1.02556 1.86010 1.18162 1.31771 1.89039 1.18779 0.83520 0.92381 1.00902 1.21396 0.94287 0.98010 1.07015 1.21319 0.94556 0.97808 0.97755 1.21262 1.00689 0.91863 1.02069 1.21344 0.90906 1.01317 1.00143 1.17417 0.90621 0.84337 1.07357 1.43156 1.17471 1.08078 1.61016 1.18170 0.85658 0.82911 0.76639 1.90661 1.22711 1.85649 1.44562 1.19194 0.96811 0.93128 1.10154 1.21095 0.91745 0.98241 0.95595 1.21042 1.02858 0.91466 1.07402 1.19180 0.88963 0.88005 0.96017 1.83577 1.31106 1.32421 1.65469 1.20866 0.95643 0.98432 1.32778 0.88626 1.25163 0.94625 1.02368 0.95769 1.69683 1.12776 1.33356 1.38926 0.85362 0.79467 0.78117 0.78810 1.19119 1.18976 1.19043 1.18126 0.92232 0.86646 1.02750 1.86145 1.36832 1.28634 1.73373 1.23322 0.81576 1.05196 0.97444 1.20945 1.00013 0.90103 1.01059 0.91973 0.92392 0.88070 0.90486 0.90922 0.82468 0.82475 0.83707 0.84912 0.74091 0.82941 0.84345 0.90266 0.91865 0.86313 0.91894 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.62 5.46 71.98 0.39 1.01 16 3 O -0.33 -6.85 9.55 -93.26 -0.89 -7.74 16 4 C 0.09 2.01 6.70 22.60 0.15 2.16 16 5 C -0.19 -3.08 9.04 22.35 0.20 -2.87 16 6 C -0.10 -1.46 10.04 22.28 0.22 -1.23 16 7 C -0.14 -2.70 10.04 22.27 0.22 -2.47 16 8 C -0.12 -3.03 8.72 22.38 0.20 -2.84 16 9 C 0.10 2.58 6.45 38.21 0.25 2.82 16 10 N -0.65 -17.94 5.23 -305.92 -1.60 -19.54 16 11 C 0.57 18.50 7.57 86.71 0.66 19.16 16 12 O -0.56 -19.91 13.50 -4.04 -0.05 -19.96 16 13 C -0.19 -6.39 5.88 -20.08 -0.12 -6.51 16 14 C -0.05 -1.58 9.52 22.52 0.21 -1.37 16 15 C -0.21 -8.53 9.14 22.33 0.20 -8.32 16 16 C 0.13 6.07 6.67 22.77 0.15 6.22 16 17 O -0.22 -11.86 8.36 -6.95 -0.06 -11.92 16 18 C -0.40 -22.70 9.94 67.93 0.68 -22.02 16 19 H 0.10 5.46 5.42 -2.91 -0.02 5.45 16 20 C 0.02 1.20 5.49 84.85 0.47 1.67 16 21 N -0.91 -52.15 13.96 21.62 0.30 -51.85 16 22 Si 0.96 45.08 28.62 68.60 1.96 47.04 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 C 0.05 1.97 6.70 22.57 0.15 2.12 16 27 O -0.33 -13.31 10.28 -79.00 -0.81 -14.12 16 28 C 0.02 0.50 9.81 113.37 1.11 1.62 16 29 C -0.10 -3.61 8.57 22.61 0.19 -3.42 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16 34 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 35 H 0.16 1.59 6.30 -2.91 -0.02 1.57 16 36 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.13 3.94 5.79 -2.91 -0.02 3.92 16 39 H 0.42 10.06 6.37 -92.71 -0.59 9.47 16 40 H 0.15 3.83 6.40 -2.91 -0.02 3.82 16 41 H 0.14 5.90 5.61 -2.91 -0.02 5.88 16 42 H 0.29 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 44 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.06 1.52 7.66 -2.39 -0.02 1.50 16 46 H 0.15 4.87 5.87 -2.91 -0.02 4.85 16 Total: -1.00 -71.41 386.23 5.39 -66.02 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.46 Total: 27.31 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 6.08 Total: -15.23 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.30 Total: -71.39 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.82 Total: -53.75 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.96 Total: 47.04 kcal Total: -71.41 5.39 -66.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003378911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.661 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds