Wall clock time and date at job start Tue Mar 31 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47351 * 2 1 4 4 C 1.46510 * 119.99720 * 274.63394 * 3 2 1 5 5 C 1.52998 * 109.46900 * 277.00356 * 4 3 2 6 6 C 1.34776 * 120.00277 * 94.63201 * 3 2 1 7 7 O 1.21620 * 119.99583 * 6.03197 * 6 3 2 8 8 C 1.47270 * 120.00016 * 186.03346 * 6 3 2 9 9 C 1.37981 * 126.80986 * 332.06586 * 8 6 3 10 10 N 1.34141 * 107.88718 * 180.12354 * 9 8 6 11 11 C 1.46498 * 125.15784 * 179.84068 * 10 9 8 12 12 C 1.50706 * 109.47001 * 124.71988 * 11 10 9 13 13 H 1.07989 * 120.00165 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99662 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00439 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99945 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46902 * 59.99432 * 16 14 12 18 18 H 1.48494 * 109.47200 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46582 * 299.99460 * 16 14 12 20 20 N 1.39768 * 109.68242 * 359.57654 * 10 9 8 21 21 C 1.31377 * 109.08011 * 0.26288 * 20 10 9 22 22 C 1.48256 * 126.51553 * 180.02562 * 21 20 10 23 23 C 1.39425 * 120.07077 * 144.69868 * 22 21 20 24 24 C 1.37899 * 119.93117 * 179.74379 * 23 22 21 25 25 C 1.38841 * 120.06766 * 0.55892 * 24 23 22 26 26 O 1.35865 * 119.93028 * 179.71714 * 25 24 23 27 27 C 1.42908 * 117.00048 * 359.97438 * 26 25 24 28 28 C 1.38839 * 120.13996 * 359.69981 * 25 24 23 29 29 C 1.37892 * 120.06997 * 0.02562 * 28 25 24 30 30 H 1.08998 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46765 * 300.00312 * 1 2 3 32 32 H 1.08994 * 109.46918 * 59.99693 * 1 2 3 33 33 H 1.09004 * 109.46884 * 240.00218 * 2 1 3 34 34 H 1.09003 * 109.47251 * 119.99819 * 2 1 3 35 35 H 1.08996 * 109.47182 * 37.00327 * 4 3 2 36 36 H 1.09000 * 109.46870 * 157.00757 * 4 3 2 37 37 H 1.09003 * 109.47305 * 300.00625 * 5 4 3 38 38 H 1.09009 * 109.47147 * 59.99867 * 5 4 3 39 39 H 1.09002 * 109.47405 * 180.02562 * 5 4 3 40 40 H 1.08004 * 126.05719 * 359.97438 * 9 8 6 41 41 H 1.08994 * 109.47168 * 244.71956 * 11 10 9 42 42 H 1.08999 * 109.47376 * 4.72305 * 11 10 9 43 43 H 0.96995 * 120.00013 * 180.02562 * 15 14 12 44 44 H 1.08004 * 120.03516 * 0.02562 * 23 22 21 45 45 H 1.07994 * 119.96439 * 180.27300 * 24 23 22 46 46 H 1.08996 * 109.47101 * 300.00722 * 27 26 25 47 47 H 1.09008 * 109.46414 * 59.99717 * 27 26 25 48 48 H 1.08994 * 109.47137 * 180.02562 * 27 26 25 49 49 H 1.07999 * 119.96517 * 180.02562 * 28 25 24 50 50 H 1.08000 * 120.03722 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1659 2.1060 -1.2647 5 6 3.5052 1.7412 -1.9082 6 6 2.3319 1.9852 1.1634 7 8 2.3149 1.3515 2.2013 8 6 2.6951 3.4123 1.1776 9 6 3.2731 4.1286 0.1497 10 7 3.4412 5.3910 0.5709 11 6 4.0287 6.4737 -0.2221 12 6 3.0665 7.6321 -0.2814 13 1 2.1130 7.5683 0.2216 14 6 3.4035 8.7733 -0.9779 15 7 4.5649 8.8512 -1.5901 16 14 2.2111 10.2094 -1.0509 17 1 1.9380 10.6963 0.3251 18 1 2.8066 11.3068 -1.8548 19 1 0.9412 9.7668 -1.6806 20 7 2.9654 5.5182 1.8789 21 6 2.5079 4.3553 2.2844 22 6 1.9146 4.0541 3.6092 23 6 0.8683 3.1386 3.7143 24 6 0.3220 2.8566 4.9487 25 6 0.8052 3.4920 6.0847 26 8 0.2610 3.2163 7.2987 27 6 -0.8040 2.2640 7.3313 28 6 1.8434 4.4082 5.9828 29 6 2.3976 4.6902 4.7521 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3531 1.8322 -1.9373 36 1 2.1345 3.1788 -1.0744 37 1 4.3181 2.0149 -1.2355 38 1 3.5368 0.6683 -2.0984 39 1 3.6153 2.2808 -2.8489 40 1 3.5444 3.7410 -0.8212 41 1 4.9604 6.7988 0.2407 42 1 4.2299 6.1165 -1.2321 43 1 4.8021 9.6541 -2.0798 44 1 0.4890 2.6474 2.8303 45 1 -0.4855 2.1443 5.0312 46 1 -1.6290 2.6204 6.7146 47 1 -0.4487 1.3084 6.9456 48 1 -1.1467 2.1372 8.3581 49 1 2.2173 4.9004 6.8684 50 1 3.2055 5.4027 4.6735 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:19 Heat of formation + Delta-G solvation = 36.261222 kcal Electronic energy + Delta-G solvation = -32188.810922 eV Core-core repulsion = 27990.621885 eV Total energy + Delta-G solvation = -4198.189037 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85444 -39.84838 -39.08687 -37.28902 -35.99454 -33.81690 -32.55988 -32.10978 -30.95559 -30.14928 -29.57703 -29.16578 -27.60443 -26.69659 -23.91201 -23.67486 -23.40512 -22.54467 -21.86900 -20.85493 -19.85105 -18.74086 -18.03229 -16.95999 -16.63872 -16.35960 -16.03850 -15.77548 -15.71924 -15.29143 -14.91168 -14.48705 -14.27842 -14.08648 -13.99459 -13.79558 -13.56872 -13.32231 -13.22885 -12.80870 -12.65672 -12.60214 -12.39303 -12.27160 -12.10552 -11.99707 -11.86608 -11.72275 -11.50437 -11.20895 -11.15517 -11.04353 -11.00442 -10.87003 -10.68937 -10.35893 -10.20026 -9.83146 -9.49390 -8.99034 -8.77743 -8.71331 -8.58356 -8.09405 -7.54250 -6.35117 -4.41197 1.37139 1.61940 2.10838 2.82068 3.05087 3.20223 3.24228 3.27170 3.29625 3.36021 3.64342 4.14025 4.23283 4.68835 4.87565 4.88032 4.89970 5.00108 5.02658 5.05202 5.06418 5.07418 5.15129 5.28147 5.31140 5.35195 5.38079 5.44311 5.51657 5.57179 5.61041 5.72194 5.75354 5.80425 5.82287 5.94335 5.99669 6.06909 6.16379 6.24748 6.33166 6.48196 6.63232 6.69411 6.85526 6.86623 6.91127 7.09056 7.47346 7.51884 7.57290 7.71426 7.74358 8.33260 8.54034 8.66435 9.25562 10.73707 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.003715 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.691813 B = 7534.738027 C =10602.434935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.082 3.918 5 C -0.179 4.179 6 C 0.601 3.399 7 O -0.543 6.543 8 C -0.310 4.310 9 C 0.081 3.919 10 N -0.312 5.312 11 C 0.251 3.749 12 C -0.534 4.534 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.893 5.893 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.274 1.274 20 N -0.261 5.261 21 C 0.138 3.862 22 C -0.034 4.034 23 C -0.026 4.026 24 C -0.210 4.210 25 C 0.126 3.874 26 O -0.320 6.320 27 C 0.028 3.972 28 C -0.157 4.157 29 C -0.052 4.052 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.187 0.813 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.269 0.731 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.096 0.904 49 H 0.130 0.870 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -16.619 4.514 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.349 5.349 4 C -0.041 4.041 5 C -0.237 4.237 6 C 0.392 3.608 7 O -0.421 6.421 8 C -0.326 4.326 9 C -0.072 4.072 10 N -0.088 5.088 11 C 0.134 3.866 12 C -0.572 4.572 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.081 5.081 21 C -0.029 4.029 22 C -0.037 4.037 23 C -0.046 4.046 24 C -0.229 4.229 25 C 0.080 3.920 26 O -0.234 6.234 27 C -0.067 4.067 28 C -0.176 4.176 29 C -0.071 4.071 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.203 0.797 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.114 0.886 49 H 0.148 0.852 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.049 -15.359 5.324 17.718 hybrid contribution -0.754 -0.186 -0.896 1.186 sum -7.803 -15.546 4.428 17.949 Atomic orbital electron populations 1.22135 0.96263 1.01785 1.02319 1.21318 0.93975 0.82737 1.02960 1.47809 1.66697 1.13919 1.06430 1.22068 0.97650 0.99176 0.85191 1.22293 0.97772 1.02340 1.01272 1.17341 0.75398 0.85382 0.82688 1.90741 1.53900 1.65601 1.31815 1.20903 1.21136 0.94649 0.95932 1.23516 0.98661 0.86070 0.98910 1.49266 1.41529 1.08382 1.09651 1.19912 0.94775 0.82842 0.89083 1.21158 1.03269 0.98946 1.33806 0.91158 1.24923 0.95677 0.98560 0.94626 1.69897 1.20869 1.29260 1.33069 0.86373 0.80627 0.80956 0.78535 1.19766 1.20973 1.19968 1.77445 1.16552 1.19843 0.94305 1.21584 0.98597 0.89888 0.92787 1.17575 0.97459 0.99362 0.89265 1.20815 0.93212 0.93643 0.96916 1.21014 1.04645 1.04878 0.92374 1.19073 0.93717 0.95302 0.83877 1.86031 1.49794 1.59710 1.27834 1.23015 0.88726 0.91557 1.03416 1.20246 0.98074 1.00963 0.98307 1.21038 0.98421 0.97165 0.90471 0.91907 0.92358 0.92649 0.91164 0.89606 0.90729 0.88101 0.91926 0.92138 0.91009 0.79671 0.93126 0.92429 0.92113 0.85942 0.85657 0.92749 0.92663 0.88568 0.85183 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.24 37.16 0.38 -1.19 16 2 C 0.11 1.19 6.24 -4.04 -0.03 1.17 16 3 N -0.61 -7.95 2.48 -175.00 -0.43 -8.38 16 4 C 0.08 0.90 5.66 -4.04 -0.02 0.88 16 5 C -0.18 -1.69 9.19 37.16 0.34 -1.35 16 6 C 0.60 10.00 6.69 -12.59 -0.08 9.92 16 7 O -0.54 -10.18 14.01 5.26 0.07 -10.10 16 8 C -0.31 -5.68 5.84 -102.95 -0.60 -6.28 16 9 C 0.08 1.44 8.94 -16.64 -0.15 1.29 16 10 N -0.31 -6.69 3.62 -62.03 -0.22 -6.91 16 11 C 0.25 5.91 6.21 -5.19 -0.03 5.88 16 12 C -0.53 -14.05 9.21 -34.44 -0.32 -14.36 16 13 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.14 13.29 55.43 0.74 -23.41 16 16 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 N -0.26 -5.81 12.27 34.57 0.42 -5.39 16 21 C 0.14 2.79 6.93 -80.57 -0.56 2.23 16 22 C -0.03 -0.63 5.67 -104.89 -0.59 -1.22 16 23 C -0.03 -0.44 7.99 -39.26 -0.31 -0.75 16 24 C -0.21 -3.05 9.02 -39.48 -0.36 -3.40 16 25 C 0.13 1.84 6.69 -39.14 -0.26 1.58 16 26 O -0.32 -4.17 10.49 -19.32 -0.20 -4.37 16 27 C 0.03 0.25 9.81 101.05 0.99 1.24 16 28 C -0.16 -2.36 9.97 -39.49 -0.39 -2.75 16 29 C -0.05 -0.87 9.75 -39.27 -0.38 -1.25 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 34 H 0.09 1.02 7.22 -51.93 -0.37 0.65 16 35 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.10 1.29 4.14 -51.93 -0.22 1.07 16 37 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 38 H 0.06 0.51 7.98 -51.92 -0.41 0.10 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.19 2.65 4.10 -52.48 -0.22 2.43 16 41 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.30 8.05 -51.93 -0.42 0.89 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 44 H 0.12 2.05 6.49 -52.48 -0.34 1.70 16 45 H 0.13 1.48 6.28 -52.49 -0.33 1.15 16 46 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 47 H 0.05 0.45 7.65 -51.92 -0.40 0.05 16 48 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 50 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 410.51 15.07 6.19 6.19 Total: -1.00 -31.37 410.51 -8.18 -39.55 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.24 Total: 3.96 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.48 Total: -6.76 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.50 Total: -44.09 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.13 Total: -14.47 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.37 -8.18 -39.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.811 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds