Wall clock time and date at job start Tue Mar 31 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39241 * 120.29755 * 2 1 4 4 C 1.43205 * 120.66044 * 359.97438 * 3 2 1 5 5 N 3.49003 * 81.03203 * 359.97438 * 2 1 3 6 6 C 1.46756 * 118.66484 * 180.22681 * 3 2 1 7 7 N 1.32008 * 131.54752 * 179.79548 * 6 3 2 8 8 C 1.35400 * 109.65171 * 179.97438 * 7 6 3 9 9 C 1.39966 * 133.27021 * 179.97438 * 8 7 6 10 10 C 1.36567 * 119.89468 * 180.02562 * 9 8 7 11 11 C 1.38789 * 120.66724 * 359.97438 * 10 9 8 12 12 C 1.37912 * 120.47370 * 0.02562 * 11 10 9 13 13 C 1.38771 * 119.72989 * 0.02562 * 12 11 10 14 14 N 1.37333 * 118.97216 * 359.79667 * 6 3 2 15 15 C 1.36556 * 120.51772 * 359.97438 * 14 6 3 16 16 N 1.38682 * 119.22681 * 180.02562 * 15 14 6 17 17 C 1.37313 * 126.50736 * 238.39824 * 16 15 14 18 18 C 1.34573 * 106.81241 * 179.90037 * 17 16 15 19 19 N 1.34199 * 108.26485 * 0.36554 * 18 17 16 20 20 C 1.30432 * 109.40877 * 359.76631 * 19 18 17 21 21 C 1.37211 * 121.54610 * 359.97438 * 15 14 6 22 22 C 1.50702 * 119.55801 * 180.02562 * 21 15 14 23 23 C 1.50694 * 109.46924 * 95.12136 * 22 21 15 24 24 H 1.07995 * 120.00630 * 0.02562 * 23 22 21 25 25 C 1.37881 * 119.99847 * 179.97438 * 23 22 21 26 26 N 1.31512 * 120.00147 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00069 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46938 * 60.00517 * 27 25 23 29 29 H 1.48493 * 109.47437 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.47292 * 300.00488 * 27 25 23 31 31 H 1.09003 * 109.46708 * 270.24710 * 1 2 3 32 32 H 1.09003 * 109.46416 * 30.24139 * 1 2 3 33 33 H 1.08993 * 109.47696 * 150.24058 * 1 2 3 34 34 H 1.08006 * 120.05677 * 0.03214 * 9 8 7 35 35 H 1.07995 * 119.66872 * 180.02562 * 10 9 8 36 36 H 1.08007 * 119.76637 * 179.97438 * 11 10 9 37 37 H 1.07996 * 120.13680 * 180.02562 * 12 11 10 38 38 H 1.08000 * 126.59594 * 0.03087 * 17 16 15 39 39 H 1.08005 * 125.86421 * 180.11075 * 18 17 16 40 40 H 1.07999 * 125.73490 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.46934 * 335.11979 * 22 21 15 42 42 H 1.09000 * 109.46857 * 215.12624 * 22 21 15 43 43 H 0.97003 * 120.00411 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.2022 0.0000 4 6 1.5143 2.4542 -0.0006 5 7 0.9630 3.4474 -0.0015 6 6 3.6765 1.1604 -0.0051 7 7 4.5798 2.1230 -0.0098 8 6 5.8212 1.5825 -0.0127 9 6 7.1076 2.1339 -0.0183 10 6 8.1997 1.3139 -0.0207 11 6 8.0489 -0.0658 -0.0170 12 6 6.7914 -0.6319 -0.0115 13 6 5.6692 0.1844 -0.0101 14 7 4.3072 -0.0595 -0.0054 15 6 3.5807 -1.2158 -0.0006 16 7 4.2452 -2.4330 -0.0005 17 6 4.1257 -3.4290 -0.9381 18 6 4.9444 -4.4255 -0.5539 19 7 5.5444 -4.0598 0.5894 20 6 5.1353 -2.8697 0.9321 21 6 2.2086 -1.2015 0.0053 22 6 1.4516 -2.5045 0.0111 23 6 1.0958 -2.8723 1.4285 24 1 1.3880 -2.2270 2.2436 25 6 0.3960 -4.0324 1.6847 26 7 0.0395 -4.8182 0.6922 27 14 -0.0458 -4.4881 3.4415 28 1 -0.8928 -3.4205 4.0317 29 1 -0.7916 -5.7721 3.4474 30 1 1.1962 -4.6339 4.2424 31 1 -0.3633 0.0044 1.0277 32 1 -0.3632 0.8879 -0.5176 33 1 -0.3634 -0.8920 -0.5100 34 1 7.2366 3.2063 -0.0207 35 1 9.1906 1.7433 -0.0246 36 1 8.9227 -0.7007 -0.0194 37 1 6.6804 -1.7062 -0.0082 38 1 3.4972 -3.4145 -1.8163 39 1 5.0901 -5.3608 -1.0740 40 1 5.4495 -2.3228 1.8088 41 1 2.0734 -3.2878 -0.4224 42 1 0.5398 -2.3976 -0.5765 43 1 -0.4524 -5.6345 0.8724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004622861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:00 Heat of formation + Delta-G solvation = 213.342979 kcal Electronic energy + Delta-G solvation = -31423.887105 eV Core-core repulsion = 27437.145485 eV Total energy + Delta-G solvation = -3986.741620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.13185 -41.81050 -39.06648 -36.98231 -36.61927 -34.89983 -33.59437 -32.70117 -30.91841 -30.76093 -29.71629 -29.36311 -27.67184 -27.08955 -24.60493 -23.40628 -23.00444 -22.10759 -21.83778 -21.07511 -20.52054 -18.76946 -18.63613 -17.65182 -16.80805 -16.73225 -16.37106 -16.07926 -15.09042 -14.77632 -14.67570 -14.61655 -14.23757 -13.97782 -13.96550 -13.87291 -13.38025 -13.23808 -13.09379 -12.92868 -12.79766 -12.54244 -12.38099 -12.16987 -12.00938 -11.81618 -11.63267 -11.49963 -11.35186 -10.99228 -10.77999 -10.48949 -10.15817 -10.07764 -9.99439 -9.88741 -9.65545 -8.96793 -8.70229 -8.45169 -8.28805 -7.45616 -6.32622 -4.38699 -0.05641 0.68226 1.33458 1.72137 2.01111 2.26696 2.64249 2.77860 2.95418 3.16392 3.22293 3.25401 3.30517 3.58655 3.65344 3.76826 3.81158 4.21995 4.35293 4.53243 4.70656 4.81110 4.86201 4.87080 5.03172 5.11440 5.18440 5.25362 5.34687 5.43185 5.55030 5.59421 5.65326 5.75762 5.78113 5.95839 5.98888 6.11312 6.18733 6.27587 6.34731 6.37745 6.41037 6.69268 6.81363 6.84558 7.07108 7.12754 7.27258 7.53291 7.58874 7.66315 7.88671 8.10432 8.62156 9.27510 10.76250 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.009198 B = 0.004806 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.383879 B = 5824.631660 C = 8034.822313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.069 3.931 3 C -0.051 4.051 4 C 0.283 3.717 5 N -0.412 5.412 6 C 0.336 3.664 7 N -0.499 5.499 8 C 0.098 3.902 9 C -0.084 4.084 10 C -0.104 4.104 11 C -0.120 4.120 12 C -0.085 4.085 13 C 0.006 3.994 14 N -0.393 5.393 15 C 0.317 3.683 16 N -0.415 5.415 17 C -0.010 4.010 18 C -0.024 4.024 19 N -0.477 5.477 20 C 0.201 3.799 21 C -0.063 4.063 22 C 0.051 3.949 23 C -0.521 4.521 24 H 0.056 0.944 25 C 0.071 3.929 26 N -0.884 5.884 27 Si 0.893 3.107 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.275 1.275 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.200 0.800 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 5.332 -4.212 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 C -0.058 4.058 4 C -0.032 4.032 5 N -0.088 5.088 6 C 0.084 3.916 7 N -0.220 5.220 8 C -0.023 4.023 9 C -0.104 4.104 10 C -0.124 4.124 11 C -0.140 4.140 12 C -0.106 4.106 13 C -0.099 4.099 14 N -0.072 5.072 15 C 0.122 3.878 16 N -0.099 5.099 17 C -0.139 4.139 18 C -0.168 4.168 19 N -0.194 5.194 20 C -0.080 4.080 21 C -0.069 4.069 22 C 0.014 3.986 23 C -0.559 4.559 24 H 0.074 0.926 25 C -0.132 4.132 26 N -0.521 5.521 27 Si 0.721 3.279 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.201 1.201 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.197 0.803 39 H 0.192 0.808 40 H 0.217 0.783 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.837 7.106 -3.849 12.731 hybrid contribution -0.443 -1.124 0.687 1.390 sum 9.394 5.982 -3.163 11.577 Atomic orbital electron populations 1.21090 0.87711 1.04295 1.04931 1.20273 0.97857 0.88859 0.86995 1.15664 0.85332 0.88097 1.16723 1.24496 0.93149 0.91847 0.93694 1.81196 1.08784 1.09490 1.09315 1.21403 0.92296 0.78585 0.99298 1.70898 0.97251 1.27091 1.26778 1.19036 0.92777 0.88659 1.01800 1.20018 0.88292 1.00335 1.01777 1.20719 0.98435 0.93345 0.99923 1.20896 0.96020 0.95070 1.01978 1.20422 0.89705 0.99514 1.00922 1.18792 0.81852 0.96781 1.12456 1.42696 1.05968 1.06239 1.52277 1.17188 0.88114 0.77130 1.05380 1.42492 1.34786 1.11416 1.21253 1.22756 1.04624 0.89520 0.97000 1.22238 0.99147 0.99987 0.95455 1.70274 1.25804 1.09794 1.13556 1.25185 0.93081 0.93477 0.96215 1.20278 0.88388 0.99632 0.98604 1.18662 0.95138 0.85329 0.99430 1.20750 1.37227 1.07215 0.90691 0.92594 1.24877 0.95190 0.95856 0.97309 1.69886 1.37991 1.13116 1.31106 0.86615 0.78818 0.78001 0.84504 1.19965 1.20999 1.20078 0.88208 0.91281 0.87895 0.84999 0.85099 0.84971 0.85067 0.80273 0.80765 0.78297 0.93326 0.93227 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.22 36.01 0.33 -1.36 16 2 C 0.07 1.07 5.94 -103.92 -0.62 0.45 16 3 C -0.05 -0.80 5.94 -104.16 -0.62 -1.42 16 4 C 0.28 4.53 13.95 -22.47 -0.31 4.22 16 5 N -0.41 -6.99 18.54 41.83 0.78 -6.21 16 6 C 0.34 5.69 7.73 -153.85 -1.19 4.50 16 7 N -0.50 -8.70 11.34 -8.75 -0.10 -8.80 16 8 C 0.10 1.53 7.21 -84.74 -0.61 0.92 16 9 C -0.08 -1.04 10.06 -39.54 -0.40 -1.44 16 10 C -0.10 -1.05 9.96 -39.98 -0.40 -1.45 16 11 C -0.12 -1.28 10.03 -39.50 -0.40 -1.68 16 12 C -0.09 -1.13 9.18 -39.50 -0.36 -1.50 16 13 C 0.01 0.10 6.79 -83.81 -0.57 -0.47 16 14 N -0.39 -6.43 2.99 -57.50 -0.17 -6.61 16 15 C 0.32 5.28 6.74 -152.36 -1.03 4.25 16 16 N -0.42 -6.75 2.19 -63.48 -0.14 -6.89 16 17 C -0.01 -0.16 8.95 -16.39 -0.15 -0.31 16 18 C -0.02 -0.36 11.85 -17.81 -0.21 -0.57 16 19 N -0.48 -7.97 11.24 -14.43 -0.16 -8.13 16 20 C 0.20 3.23 8.90 -89.45 -0.80 2.43 16 21 C -0.06 -1.08 5.05 -104.66 -0.53 -1.61 16 22 C 0.05 1.02 4.34 -29.04 -0.13 0.90 16 23 C -0.52 -12.07 9.09 -34.44 -0.31 -12.39 16 24 H 0.06 1.32 7.74 -52.49 -0.41 0.91 16 25 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.88 -22.55 13.29 55.43 0.74 -21.82 16 27 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 0.83 7.14 -51.93 -0.37 0.46 16 33 H 0.10 1.44 6.04 -51.93 -0.31 1.13 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.13 1.78 5.09 -52.49 -0.27 1.51 16 38 H 0.18 2.42 7.71 -52.49 -0.40 2.01 16 39 H 0.18 2.19 8.06 -52.48 -0.42 1.76 16 40 H 0.20 2.86 8.03 -52.49 -0.42 2.44 16 41 H 0.05 1.02 4.67 -51.93 -0.24 0.78 16 42 H 0.05 1.01 6.16 -51.93 -0.32 0.69 16 43 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -28.41 368.08 -10.92 -39.33 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.99 Total: 3.89 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -8.39 Total: -4.87 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.94 Total: -58.45 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.41 -10.92 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004622861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.673 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds