Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.53008 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47096 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00258 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99665 * 179.97438 * 5 4 3 8 8 C 1.39443 * 119.99637 * 185.43218 * 7 5 4 9 9 C 1.39134 * 119.92917 * 33.59287 * 8 7 5 10 10 C 1.37664 * 120.07152 * 180.27619 * 9 8 7 11 11 C 1.39749 * 119.92774 * 359.52384 * 10 9 8 12 12 C 1.47605 * 120.07497 * 180.22693 * 11 10 9 13 13 O 1.21579 * 119.99662 * 151.78402 * 12 11 10 14 14 N 1.34767 * 119.99952 * 331.78981 * 12 11 10 15 15 C 1.46507 * 120.00167 * 356.77738 * 14 12 11 16 16 C 1.50703 * 109.47146 * 106.40418 * 15 14 12 17 17 H 1.07995 * 120.00215 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99832 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99839 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99841 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47313 * 60.00114 * 20 18 16 22 22 H 1.48503 * 109.47187 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47458 * 299.99741 * 20 18 16 24 24 C 1.46509 * 120.00153 * 176.77384 * 14 12 11 25 25 C 1.53004 * 109.46553 * 94.62774 * 24 14 12 26 26 C 1.47199 * 109.46630 * 180.02562 * 25 24 14 27 27 N 9.72559 * 138.21659 * 175.59543 * 8 1 2 28 28 C 1.39751 * 119.85314 * 0.47936 * 11 10 9 29 29 C 1.37663 * 119.92302 * 359.75134 * 28 11 10 30 30 H 1.09000 * 109.46917 * 59.99848 * 1 2 3 31 31 H 1.08999 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47081 * 299.99862 * 1 2 3 33 33 H 1.09002 * 109.47128 * 239.99620 * 2 1 3 34 34 H 1.09000 * 109.46917 * 120.00152 * 2 1 3 35 35 H 1.08998 * 109.47135 * 60.00171 * 3 2 1 36 36 H 1.08994 * 109.47115 * 299.99631 * 3 2 1 37 37 H 1.09002 * 109.47044 * 59.99618 * 4 3 2 38 38 H 1.09000 * 109.46915 * 300.00203 * 4 3 2 39 39 H 0.96999 * 120.00116 * 5.42886 * 7 5 4 40 40 H 1.07995 * 119.96327 * 0.02562 * 9 8 7 41 41 H 1.08008 * 120.03739 * 179.72827 * 10 9 8 42 42 H 1.09000 * 109.46850 * 226.40377 * 15 14 12 43 43 H 1.08997 * 109.46777 * 346.40001 * 15 14 12 44 44 H 0.96998 * 119.99707 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.47030 * 214.62864 * 24 14 12 46 46 H 1.08999 * 109.46642 * 334.62862 * 24 14 12 47 47 H 1.09002 * 109.47086 * 299.99962 * 25 24 14 48 48 H 1.08996 * 109.47271 * 60.00233 * 25 24 14 49 49 H 1.07995 * 120.03792 * 179.72420 * 28 11 10 50 50 H 1.08005 * 119.96457 * 180.02562 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7851 -0.0004 7 7 5.3974 3.1096 0.0009 8 6 5.8631 4.4190 0.1147 9 6 5.1593 5.3419 0.8820 10 6 5.6133 6.6369 0.9917 11 6 6.7878 7.0215 0.3394 12 6 7.2803 8.4079 0.4589 13 8 8.4699 8.6405 0.3654 14 7 6.4112 9.4157 0.6717 15 6 4.9719 9.1452 0.7140 16 6 4.4871 9.2269 2.1385 17 1 5.1816 9.4568 2.9330 18 6 3.1568 9.0081 2.4276 19 7 2.3110 8.7286 1.4601 20 14 2.5560 9.1086 4.1934 21 1 2.8208 10.4678 4.7298 22 1 1.0971 8.8346 4.2363 23 1 3.2724 8.1028 5.0182 24 6 6.9056 10.7818 0.8608 25 6 6.8841 11.5217 -0.4783 26 6 7.3815 12.8941 -0.2884 27 7 7.7640 13.9537 -0.1357 28 6 7.4923 6.0921 -0.4306 29 6 7.0302 4.8000 -0.5400 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9329 0.9288 0.8909 39 1 6.0271 2.3759 -0.0775 40 1 4.2537 5.0430 1.3888 41 1 5.0641 7.3540 1.5840 42 1 4.4457 9.8829 0.1082 43 1 4.7781 8.1472 0.3208 44 1 1.3752 8.5743 1.6635 45 1 6.2680 11.3034 1.5745 46 1 7.9264 10.7492 1.2416 47 1 7.5218 11.0000 -1.1919 48 1 5.8634 11.5542 -0.8591 49 1 8.3979 6.3873 -0.9396 50 1 7.5744 4.0810 -1.1346 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004696332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -17.626947 kcal Electronic energy + Delta-G solvation = -31224.887251 eV Core-core repulsion = 27024.361447 eV Total energy + Delta-G solvation = -4200.525804 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55343 -39.62314 -37.80010 -36.57152 -35.59190 -35.37447 -34.62595 -32.98670 -31.56317 -30.98583 -30.31802 -29.05804 -27.43649 -25.38651 -24.19613 -23.25732 -22.50635 -22.07048 -21.20050 -20.18705 -18.98346 -17.66534 -17.43657 -16.89488 -16.70231 -16.55761 -16.24229 -15.59687 -14.98519 -14.76597 -14.60728 -14.46162 -14.36066 -14.02383 -13.85948 -13.77959 -13.50597 -13.24589 -13.04169 -12.92985 -12.55697 -12.50813 -12.36800 -12.25831 -12.08064 -12.07579 -11.56766 -11.53511 -11.44559 -11.42225 -11.21842 -11.05443 -10.94366 -10.80194 -10.58227 -10.34305 -10.15792 -10.05107 -9.84345 -9.72954 -9.18560 -8.73636 -8.32654 -7.98098 -7.73198 -6.28927 -4.39353 1.27905 1.87034 2.57970 2.89950 2.99784 3.02152 3.20356 3.26821 3.28155 3.44904 3.70895 4.23532 4.34733 4.42529 4.50052 4.58172 4.70505 4.98570 5.01864 5.03716 5.19639 5.20595 5.27022 5.32704 5.39994 5.41462 5.44969 5.58961 5.59321 5.69573 5.74478 5.80670 5.88112 5.94027 5.97285 6.03176 6.10827 6.18108 6.32888 6.49659 6.51943 6.59711 6.63834 6.99034 7.04116 7.14232 7.34332 7.38878 7.48182 7.63587 7.76227 7.89090 8.13683 8.21083 8.66907 8.87091 9.29247 10.75818 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.002731 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.048075 B =10251.339649 C =12341.809647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.138 4.138 5 C 0.503 3.497 6 O -0.502 6.502 7 N -0.677 5.677 8 C 0.159 3.841 9 C -0.134 4.134 10 C -0.064 4.064 11 C -0.153 4.153 12 C 0.560 3.440 13 O -0.569 6.569 14 N -0.588 5.588 15 C 0.211 3.789 16 C -0.553 4.553 17 H 0.066 0.934 18 C 0.073 3.927 19 N -0.873 5.873 20 Si 0.894 3.106 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.127 3.873 25 C -0.045 4.045 26 C 0.223 3.777 27 N -0.452 5.452 28 C -0.049 4.049 29 C -0.174 4.174 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.407 0.593 40 H 0.134 0.866 41 H 0.197 0.803 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.270 0.730 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.129 0.871 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 -17.597 -4.562 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.178 4.178 5 C 0.290 3.710 6 O -0.375 6.375 7 N -0.322 5.322 8 C 0.065 3.935 9 C -0.154 4.154 10 C -0.082 4.082 11 C -0.156 4.156 12 C 0.350 3.650 13 O -0.451 6.451 14 N -0.317 5.317 15 C 0.092 3.908 16 C -0.591 4.591 17 H 0.084 0.916 18 C -0.134 4.134 19 N -0.509 5.509 20 Si 0.721 3.279 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.001 3.999 25 C -0.087 4.087 26 C -0.095 4.095 27 N -0.130 5.130 28 C -0.068 4.068 29 C -0.194 4.194 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.242 0.758 40 H 0.152 0.848 41 H 0.214 0.786 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.126 0.874 48 H 0.131 0.869 49 H 0.147 0.853 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.900 -15.304 -4.419 16.042 hybrid contribution -0.366 -0.832 0.724 1.162 sum 1.534 -16.136 -3.695 16.625 Atomic orbital electron populations 1.21765 0.95647 1.01440 1.02259 1.21535 0.96248 0.96514 1.01818 1.21416 0.92397 0.96698 1.04133 1.21704 0.98481 0.93182 1.04404 1.20974 0.81772 0.92246 0.75972 1.90834 1.54741 1.46092 1.45857 1.43511 1.07850 1.07420 1.73398 1.17990 0.94874 0.84590 0.96019 1.21139 1.01329 0.93301 0.99641 1.23158 0.92672 0.96734 0.95624 1.19905 0.97911 0.94069 1.03745 1.18292 0.85430 0.85116 0.76156 1.90684 1.16187 1.85043 1.53157 1.48050 1.09596 1.05586 1.68501 1.20248 0.73354 0.99529 0.97661 1.21350 0.94026 1.50687 0.92991 0.91579 1.24967 0.96473 0.94247 0.97664 1.69907 1.04299 1.44744 1.31952 0.86599 0.77879 0.78961 0.84434 1.19957 1.21015 1.19859 1.21122 1.01584 0.82844 0.94302 1.19768 1.03353 0.83717 1.01842 1.29161 0.92737 0.94747 0.92876 1.81205 1.10188 1.12668 1.08940 1.20889 0.98166 0.91601 0.96158 1.20597 0.98439 0.96932 1.03465 0.92568 0.92874 0.92527 0.92083 0.92041 0.90866 0.90947 0.88869 0.88693 0.75769 0.84820 0.78644 0.94788 0.91455 0.92016 0.89001 0.89899 0.87422 0.86875 0.85340 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.11 -0.99 4.50 -26.73 -0.12 -1.11 16 4 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 5 C 0.50 6.29 7.55 -10.99 -0.08 6.20 16 6 O -0.50 -8.88 13.67 5.56 0.08 -8.81 16 7 N -0.68 -7.61 5.32 -9.86 -0.05 -7.66 16 8 C 0.16 2.39 6.27 -83.73 -0.53 1.87 16 9 C -0.13 -2.46 8.62 -39.46 -0.34 -2.80 16 10 C -0.06 -1.27 7.40 -39.23 -0.29 -1.56 16 11 C -0.15 -2.86 5.49 -104.95 -0.58 -3.44 16 12 C 0.56 11.04 7.45 -12.44 -0.09 10.94 16 13 O -0.57 -11.92 16.21 5.30 0.09 -11.84 16 14 N -0.59 -11.21 2.51 -176.25 -0.44 -11.65 16 15 C 0.21 4.55 4.69 -5.19 -0.02 4.53 16 16 C -0.55 -13.03 7.00 -34.44 -0.24 -13.27 16 17 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.78 5.43 -17.82 -0.10 1.69 16 19 N -0.87 -22.62 13.29 55.43 0.74 -21.89 16 20 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C 0.13 2.08 5.33 -4.04 -0.02 2.06 16 25 C -0.05 -0.62 6.03 -29.52 -0.18 -0.80 16 26 C 0.22 3.33 15.44 -20.73 -0.32 3.01 16 27 N -0.45 -7.78 18.54 42.19 0.78 -7.00 16 28 C -0.05 -0.77 9.58 -39.23 -0.38 -1.15 16 29 C -0.17 -2.39 9.94 -39.46 -0.39 -2.79 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.41 2.86 8.82 -40.82 -0.36 2.50 16 40 H 0.13 2.64 6.42 -52.49 -0.34 2.30 16 41 H 0.20 4.36 3.45 -52.48 -0.18 4.18 16 42 H 0.03 0.76 8.13 -51.93 -0.42 0.34 16 43 H 0.07 1.54 4.21 -51.93 -0.22 1.32 16 44 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.09 1.53 7.84 -51.93 -0.41 1.12 16 46 H 0.08 1.38 7.33 -51.93 -0.38 1.00 16 47 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.11 1.44 8.13 -51.93 -0.42 1.02 16 49 H 0.13 1.89 7.89 -52.49 -0.41 1.47 16 50 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 420.40 15.07 6.34 6.34 Total: -1.00 -30.72 420.40 -8.46 -39.18 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.33 Total: 8.47 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.63 Total: 0.38 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 1.02 Total: -48.21 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.16 Total: -20.64 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -30.72 -8.46 -39.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004696332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.551 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds