Wall clock time and date at job start Tue Mar 31 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46743 * 2 1 4 4 C 1.46496 * 120.00124 * 274.93620 * 3 2 1 5 5 C 1.52993 * 109.47420 * 270.00165 * 4 3 2 6 6 C 1.34780 * 119.99555 * 94.94049 * 3 2 1 7 7 O 1.21615 * 120.00444 * 5.59958 * 6 3 2 8 8 C 1.47287 * 119.99605 * 185.59974 * 6 3 2 9 9 C 1.37966 * 126.81091 * 55.86971 * 8 6 3 10 10 N 1.34158 * 107.88937 * 179.97438 * 9 8 6 11 11 C 1.46500 * 125.16134 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47104 * 124.99957 * 11 10 9 13 13 H 1.08002 * 119.99981 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99751 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00290 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99657 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47357 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46951 * 119.99993 * 16 14 12 19 19 H 1.48502 * 109.47108 * 239.99611 * 16 14 12 20 20 N 1.39763 * 109.67146 * 0.26322 * 10 9 8 21 21 C 1.31363 * 109.08543 * 359.54491 * 20 10 9 22 22 C 1.48293 * 126.51649 * 180.15370 * 21 20 10 23 23 C 1.39429 * 120.09498 * 145.33127 * 22 21 20 24 24 C 1.38011 * 119.98221 * 180.02562 * 23 22 21 25 25 C 1.38262 * 120.18788 * 0.02562 * 24 23 22 26 26 C 1.38791 * 120.19380 * 359.97438 * 25 24 23 27 27 O 1.35902 * 119.99467 * 180.02562 * 26 25 24 28 28 C 1.42905 * 117.00016 * 0.02562 * 27 26 25 29 29 C 1.38542 * 120.01442 * 359.76602 * 26 25 24 30 30 H 1.09006 * 109.47115 * 60.00142 * 1 2 3 31 31 H 1.09001 * 109.46618 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47228 * 299.99965 * 1 2 3 33 33 H 1.08997 * 109.47305 * 240.00578 * 2 1 3 34 34 H 1.08994 * 109.47427 * 120.00150 * 2 1 3 35 35 H 1.09003 * 109.46952 * 30.00436 * 4 3 2 36 36 H 1.09007 * 109.47110 * 150.00211 * 4 3 2 37 37 H 1.09003 * 109.47279 * 300.00071 * 5 4 3 38 38 H 1.09000 * 109.47217 * 60.00250 * 5 4 3 39 39 H 1.09002 * 109.47330 * 180.02562 * 5 4 3 40 40 H 1.07999 * 126.05295 * 359.97438 * 9 8 6 41 41 H 1.09002 * 109.47122 * 4.99954 * 11 10 9 42 42 H 1.09001 * 109.47023 * 245.00121 * 11 10 9 43 43 H 0.97001 * 120.00122 * 180.02562 * 15 14 12 44 44 H 1.08003 * 120.01028 * 359.97438 * 23 22 21 45 45 H 1.08001 * 119.90976 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.90583 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.47023 * 179.97438 * 28 27 26 48 48 H 1.08995 * 109.47034 * 300.00145 * 28 27 26 49 49 H 1.09000 * 109.46604 * 59.99760 * 28 27 26 50 50 H 1.08003 * 120.09334 * 180.27268 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5636 1.8824 -1.8282 6 6 2.3376 1.9830 1.1629 7 8 2.3183 1.3496 2.2009 8 6 2.7101 3.4080 1.1767 9 6 1.9631 4.4624 0.6931 10 7 2.6603 5.5899 0.8990 11 6 2.2162 6.9359 0.5285 12 6 2.2527 7.8287 1.7420 13 1 2.5740 7.4330 2.6942 14 6 1.8747 9.1505 1.6370 15 7 1.4829 9.6323 0.4777 16 14 1.9206 10.2573 3.1411 17 1 2.3951 9.4796 4.3137 18 1 2.8451 11.3925 2.8923 19 1 0.5573 10.7798 3.4129 20 7 3.8769 5.2849 1.5157 21 6 3.9477 3.9873 1.7076 22 6 5.0695 3.2481 2.3356 23 6 4.8142 2.1212 3.1159 24 6 5.8599 1.4353 3.6997 25 6 7.1616 1.8626 3.5137 26 6 7.4243 2.9834 2.7384 27 8 8.7054 3.3995 2.5578 28 6 9.7316 2.6356 3.1947 29 6 6.3813 3.6749 2.1441 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.4188 1.7453 -1.9766 36 1 2.0049 3.1732 -1.0899 37 1 4.3042 2.2454 -1.1156 38 1 3.7182 0.8176 -2.0023 39 1 3.6687 2.4237 -2.7684 40 1 0.9896 4.3924 0.2308 41 1 1.1980 6.8892 0.1423 42 1 2.8777 7.3384 -0.2387 43 1 1.2174 10.5623 0.4037 44 1 3.7984 1.7855 3.2642 45 1 5.6609 0.5623 4.3036 46 1 7.9765 1.3222 3.9723 47 1 10.7037 3.0742 2.9697 48 1 9.5715 2.6398 4.2729 49 1 9.7021 1.6100 2.8270 50 1 6.5846 4.5447 1.5370 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:23 Heat of formation + Delta-G solvation = 26.954559 kcal Electronic energy + Delta-G solvation = -32200.834120 eV Core-core repulsion = 28002.241516 eV Total energy + Delta-G solvation = -4198.592605 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.78282 -39.82007 -39.15649 -37.25429 -35.98226 -33.84177 -32.32647 -32.26187 -30.69170 -30.12605 -29.76206 -29.05988 -27.29649 -26.96368 -23.97300 -23.77184 -23.52046 -22.32238 -22.03744 -20.72909 -19.73560 -18.81553 -17.59256 -16.99122 -16.66000 -16.40726 -16.00137 -15.75382 -15.70557 -15.65007 -14.76188 -14.65014 -14.31661 -14.00009 -13.91458 -13.71790 -13.60815 -13.48309 -13.20923 -12.94154 -12.66300 -12.59426 -12.34545 -12.29674 -12.11839 -12.01582 -11.85221 -11.70701 -11.36148 -11.16366 -11.07085 -11.03098 -10.97783 -10.91348 -10.76436 -10.33667 -10.17746 -9.83647 -9.53702 -9.18498 -8.70685 -8.62457 -8.39762 -8.03840 -7.71671 -6.32752 -4.38027 1.24126 1.68074 2.24284 2.81973 2.98181 3.19135 3.19797 3.27920 3.34608 3.39347 3.44175 4.08327 4.26785 4.66511 4.84424 4.88497 4.95851 5.03018 5.05779 5.09331 5.10594 5.11177 5.13853 5.28319 5.33378 5.35806 5.39223 5.45148 5.58458 5.62607 5.67302 5.68580 5.78165 5.80115 5.88329 5.95892 6.06242 6.10016 6.20409 6.21465 6.41025 6.54264 6.66628 6.71309 6.84618 6.86897 6.94987 7.11719 7.50019 7.52969 7.56478 7.74105 7.76666 8.33994 8.46181 8.70239 9.28812 10.76244 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.006238 B = 0.004023 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4487.696311 B = 6958.129520 C =10219.215680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.612 5.612 4 C 0.104 3.896 5 C -0.167 4.167 6 C 0.610 3.390 7 O -0.539 6.539 8 C -0.301 4.301 9 C 0.091 3.909 10 N -0.310 5.310 11 C 0.251 3.749 12 C -0.532 4.532 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.281 1.281 20 N -0.252 5.252 21 C 0.122 3.878 22 C 0.032 3.968 23 C -0.135 4.135 24 C -0.088 4.088 25 C -0.206 4.206 26 C 0.115 3.885 27 O -0.318 6.318 28 C 0.029 3.971 29 C -0.123 4.123 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.175 0.825 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.268 0.732 44 H 0.161 0.839 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.096 0.904 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -19.314 -2.850 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.345 5.345 4 C -0.019 4.019 5 C -0.226 4.226 6 C 0.400 3.600 7 O -0.417 6.417 8 C -0.317 4.317 9 C -0.062 4.062 10 N -0.087 5.087 11 C 0.134 3.866 12 C -0.570 4.570 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.074 5.074 21 C -0.044 4.044 22 C 0.030 3.970 23 C -0.155 4.155 24 C -0.106 4.106 25 C -0.226 4.226 26 C 0.071 3.929 27 O -0.232 6.232 28 C -0.066 4.066 29 C -0.143 4.143 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.192 0.808 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.178 0.822 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.201 -17.979 -2.427 19.172 hybrid contribution -0.449 -0.092 0.579 0.738 sum 5.752 -18.071 -1.849 19.054 Atomic orbital electron populations 1.22149 0.96128 1.01923 1.02383 1.21361 0.94043 0.82703 1.03059 1.47893 1.66250 1.13850 1.06549 1.21608 0.97259 0.98189 0.84829 1.22141 0.97512 1.01618 1.01309 1.17334 0.74600 0.85463 0.82560 1.90550 1.52842 1.66318 1.32000 1.20769 0.99173 0.92783 1.18981 1.22705 0.98106 0.86087 0.99272 1.49194 1.10919 1.08484 1.40083 1.19920 0.96056 0.72775 0.97826 1.21256 1.45924 0.94671 0.95146 0.91063 1.24918 0.94394 0.97694 0.96815 1.69913 1.43837 1.15665 1.23772 0.86269 0.77815 0.80136 0.82350 1.19411 1.20578 1.20704 1.77442 1.02045 1.12818 1.15063 1.21490 0.93101 0.90383 0.99420 1.17513 0.89256 0.93968 0.96288 1.22050 1.02098 0.94450 0.96852 1.20829 0.91588 0.99329 0.98844 1.21246 0.98221 0.98863 1.04239 1.18784 0.83862 0.93930 0.96363 1.86079 1.13044 1.53517 1.70562 1.22997 0.90022 0.96155 0.97410 1.20473 0.89713 1.01244 1.02847 0.92645 0.91849 0.92193 0.91106 0.89555 0.90764 0.89615 0.92044 0.92782 0.91694 0.80795 0.92394 0.93089 0.92265 0.82220 0.85811 0.85877 0.88524 0.92813 0.92906 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 37.16 0.38 -1.15 16 2 C 0.11 1.14 6.22 -4.04 -0.03 1.12 16 3 N -0.61 -7.71 2.47 -175.01 -0.43 -8.14 16 4 C 0.10 1.12 6.03 -4.05 -0.02 1.09 16 5 C -0.17 -1.78 10.24 37.15 0.38 -1.40 16 6 C 0.61 9.92 7.10 -12.58 -0.09 9.83 16 7 O -0.54 -9.82 13.24 5.26 0.07 -9.75 16 8 C -0.30 -5.39 5.16 -102.95 -0.53 -5.92 16 9 C 0.09 1.61 9.34 -16.63 -0.16 1.45 16 10 N -0.31 -6.64 3.62 -62.03 -0.22 -6.86 16 11 C 0.25 5.97 6.21 -5.19 -0.03 5.94 16 12 C -0.53 -14.33 9.21 -34.44 -0.32 -14.65 16 13 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 16 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 N -0.25 -5.64 12.28 34.58 0.42 -5.22 16 21 C 0.12 2.44 6.94 -80.56 -0.56 1.88 16 22 C 0.03 0.58 5.84 -104.93 -0.61 -0.03 16 23 C -0.14 -2.27 9.07 -39.22 -0.36 -2.63 16 24 C -0.09 -1.23 10.03 -39.66 -0.40 -1.63 16 25 C -0.21 -2.74 9.03 -39.37 -0.36 -3.10 16 26 C 0.12 1.76 6.68 -39.26 -0.26 1.49 16 27 O -0.32 -4.46 10.49 -19.43 -0.20 -4.66 16 28 C 0.03 0.27 9.81 101.05 0.99 1.26 16 29 C -0.12 -2.13 9.70 -39.08 -0.38 -2.51 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.09 1.00 7.22 -51.93 -0.37 0.63 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.09 1.01 4.90 -51.93 -0.25 0.76 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.18 2.47 7.77 -52.49 -0.41 2.06 16 41 H 0.06 1.33 8.05 -51.93 -0.42 0.92 16 42 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.16 2.88 4.62 -52.48 -0.24 2.64 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.26 6.28 -52.49 -0.33 0.93 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 49 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 50 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -31.50 416.24 -8.26 -39.75 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.44 Total: 3.55 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.44 Total: -7.30 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.50 Total: -43.99 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.13 Total: -14.41 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.50 -8.26 -39.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.707 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds