Wall clock time and date at job start Tue Mar 31 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46743 * 2 1 4 4 C 1.46496 * 120.00124 * 274.93620 * 3 2 1 5 5 C 1.52993 * 109.47420 * 270.00165 * 4 3 2 6 6 C 1.34780 * 119.99555 * 94.94049 * 3 2 1 7 7 O 1.21615 * 120.00444 * 5.59958 * 6 3 2 8 8 C 1.47287 * 119.99605 * 185.59974 * 6 3 2 9 9 C 1.37966 * 126.81091 * 55.86971 * 8 6 3 10 10 N 1.34158 * 107.88937 * 179.97438 * 9 8 6 11 11 C 1.46500 * 125.16134 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47104 * 124.99957 * 11 10 9 13 13 H 1.08002 * 119.99981 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99751 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00290 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99657 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47357 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46951 * 119.99993 * 16 14 12 19 19 H 1.48502 * 109.47108 * 239.99611 * 16 14 12 20 20 N 1.39763 * 109.67146 * 0.26322 * 10 9 8 21 21 C 1.31363 * 109.08543 * 359.54491 * 20 10 9 22 22 C 1.48293 * 126.51649 * 180.15370 * 21 20 10 23 23 C 1.39429 * 120.09498 * 145.33127 * 22 21 20 24 24 C 1.38011 * 119.98221 * 180.02562 * 23 22 21 25 25 C 1.38262 * 120.18788 * 0.02562 * 24 23 22 26 26 C 1.38791 * 120.19380 * 359.97438 * 25 24 23 27 27 O 1.35902 * 119.99467 * 180.02562 * 26 25 24 28 28 C 1.42905 * 117.00016 * 0.02562 * 27 26 25 29 29 C 1.38542 * 120.01442 * 359.76602 * 26 25 24 30 30 H 1.09006 * 109.47115 * 60.00142 * 1 2 3 31 31 H 1.09001 * 109.46618 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47228 * 299.99965 * 1 2 3 33 33 H 1.08997 * 109.47305 * 240.00578 * 2 1 3 34 34 H 1.08994 * 109.47427 * 120.00150 * 2 1 3 35 35 H 1.09003 * 109.46952 * 30.00436 * 4 3 2 36 36 H 1.09007 * 109.47110 * 150.00211 * 4 3 2 37 37 H 1.09003 * 109.47279 * 300.00071 * 5 4 3 38 38 H 1.09000 * 109.47217 * 60.00250 * 5 4 3 39 39 H 1.09002 * 109.47330 * 180.02562 * 5 4 3 40 40 H 1.07999 * 126.05295 * 359.97438 * 9 8 6 41 41 H 1.09002 * 109.47122 * 4.99954 * 11 10 9 42 42 H 1.09001 * 109.47023 * 245.00121 * 11 10 9 43 43 H 0.97001 * 120.00122 * 180.02562 * 15 14 12 44 44 H 1.08003 * 120.01028 * 359.97438 * 23 22 21 45 45 H 1.08001 * 119.90976 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.90583 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.47023 * 179.97438 * 28 27 26 48 48 H 1.08995 * 109.47034 * 300.00145 * 28 27 26 49 49 H 1.09000 * 109.46604 * 59.99760 * 28 27 26 50 50 H 1.08003 * 120.09334 * 180.27268 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5636 1.8824 -1.8282 6 6 2.3376 1.9830 1.1629 7 8 2.3183 1.3496 2.2009 8 6 2.7101 3.4080 1.1767 9 6 1.9631 4.4624 0.6931 10 7 2.6603 5.5899 0.8990 11 6 2.2162 6.9359 0.5285 12 6 2.2527 7.8287 1.7420 13 1 2.5740 7.4330 2.6942 14 6 1.8747 9.1505 1.6370 15 7 1.4829 9.6323 0.4777 16 14 1.9206 10.2573 3.1411 17 1 2.3951 9.4796 4.3137 18 1 2.8451 11.3925 2.8923 19 1 0.5573 10.7798 3.4129 20 7 3.8769 5.2849 1.5157 21 6 3.9477 3.9873 1.7076 22 6 5.0695 3.2481 2.3356 23 6 4.8142 2.1212 3.1159 24 6 5.8599 1.4353 3.6997 25 6 7.1616 1.8626 3.5137 26 6 7.4243 2.9834 2.7384 27 8 8.7054 3.3995 2.5578 28 6 9.7316 2.6356 3.1947 29 6 6.3813 3.6749 2.1441 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.4188 1.7453 -1.9766 36 1 2.0049 3.1732 -1.0899 37 1 4.3042 2.2454 -1.1156 38 1 3.7182 0.8176 -2.0023 39 1 3.6687 2.4237 -2.7684 40 1 0.9896 4.3924 0.2308 41 1 1.1980 6.8892 0.1423 42 1 2.8777 7.3384 -0.2387 43 1 1.2174 10.5623 0.4037 44 1 3.7984 1.7855 3.2642 45 1 5.6609 0.5623 4.3036 46 1 7.9765 1.3222 3.9723 47 1 10.7037 3.0742 2.9697 48 1 9.5715 2.6398 4.2729 49 1 9.7021 1.6100 2.8270 50 1 6.5846 4.5447 1.5370 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:22 Heat of formation + Delta-G solvation = 9.428104 kcal Electronic energy + Delta-G solvation = -32201.594124 eV Core-core repulsion = 28002.241516 eV Total energy + Delta-G solvation = -4199.352609 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.21981 -40.94510 -40.40728 -38.40092 -37.09148 -35.71942 -33.95221 -33.19831 -32.02636 -31.36075 -31.10688 -30.17602 -28.74066 -28.07692 -25.56783 -24.97313 -24.49476 -23.61790 -23.30620 -22.04794 -21.07866 -20.03569 -18.87015 -18.63785 -18.10984 -17.63423 -17.24700 -17.01282 -16.84422 -16.63906 -16.37429 -16.06760 -15.77725 -15.32985 -14.94351 -14.85042 -14.65020 -14.60400 -14.47162 -14.19272 -14.09324 -13.78538 -13.56862 -13.50887 -13.39731 -12.98994 -12.93352 -12.91633 -12.77356 -12.64996 -12.50147 -12.35580 -12.10523 -11.97014 -11.89775 -11.84273 -11.76287 -11.56743 -10.84029 -10.79666 -10.63276 -9.85130 -9.64599 -9.34273 -9.09283 -8.38304 -6.50889 -0.02988 0.45866 0.82215 1.33624 1.35366 1.39485 1.48959 1.64613 1.85008 2.23719 2.31711 2.34721 2.81741 2.94976 3.39035 3.68383 3.84569 3.86161 4.05155 4.09092 4.25776 4.27712 4.27988 4.31942 4.42668 4.42806 4.46704 4.51353 4.54142 4.60076 4.62227 4.64654 4.74344 4.79060 4.87005 4.95250 4.96401 5.00452 5.00836 5.11320 5.22436 5.30530 5.36499 5.38849 5.50760 5.52004 5.64029 5.71203 5.77558 5.83110 6.05778 6.40530 6.44964 6.57486 6.80096 7.19158 7.24466 8.69938 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.006238 B = 0.004023 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4487.696311 B = 6958.129520 C =10219.215680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.100 3.900 5 C -0.162 4.162 6 C 0.608 3.392 7 O -0.564 6.564 8 C -0.300 4.300 9 C 0.099 3.901 10 N -0.331 5.331 11 C 0.267 3.733 12 C -0.551 4.551 13 H 0.047 0.953 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.965 3.035 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.267 1.267 20 N -0.302 5.302 21 C 0.120 3.880 22 C 0.008 3.992 23 C -0.148 4.148 24 C -0.078 4.078 25 C -0.191 4.191 26 C 0.116 3.884 27 O -0.339 6.339 28 C 0.017 3.983 29 C -0.146 4.146 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.210 0.790 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.274 0.726 44 H 0.147 0.853 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.117 0.883 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 -21.810 -2.842 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.334 5.334 4 C -0.022 4.022 5 C -0.220 4.220 6 C 0.397 3.603 7 O -0.444 6.444 8 C -0.315 4.315 9 C -0.051 4.051 10 N -0.108 5.108 11 C 0.149 3.851 12 C -0.589 4.589 13 H 0.066 0.934 14 C -0.175 4.175 15 N -0.554 5.554 16 Si 0.789 3.211 17 H -0.205 1.205 18 H -0.198 1.198 19 H -0.192 1.192 20 N -0.124 5.124 21 C -0.047 4.047 22 C 0.006 3.994 23 C -0.168 4.168 24 C -0.096 4.096 25 C -0.210 4.210 26 C 0.071 3.929 27 O -0.253 6.253 28 C -0.077 4.077 29 C -0.166 4.166 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.226 0.774 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.165 0.835 45 H 0.175 0.825 46 H 0.182 0.818 47 H 0.136 0.864 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.472 -20.499 -2.458 21.637 hybrid contribution -0.397 0.538 0.560 0.872 sum 6.075 -19.961 -1.899 20.952 Atomic orbital electron populations 1.22097 0.94915 1.03136 1.01773 1.21592 0.94960 0.81091 1.03807 1.47948 1.64734 1.14754 1.05934 1.21795 0.98362 0.97504 0.84564 1.22092 0.96389 1.02649 1.00915 1.17144 0.75017 0.84669 0.83442 1.90533 1.54277 1.66427 1.33156 1.21045 0.98334 0.94114 1.18051 1.23265 0.98854 0.84776 0.98247 1.48905 1.11589 1.08475 1.41843 1.19496 0.95778 0.73754 0.96100 1.21376 1.46380 0.95835 0.95290 0.93435 1.25606 0.93897 0.98677 0.99347 1.69965 1.44073 1.16262 1.25051 0.85403 0.78459 0.78347 0.78861 1.20461 1.19787 1.19185 1.77360 1.03207 1.14530 1.17270 1.21994 0.94269 0.89989 0.98422 1.17626 0.89093 0.94939 0.97743 1.22018 1.02509 0.94552 0.97689 1.21196 0.91051 0.99543 0.97839 1.21623 0.99073 0.97680 1.02624 1.18842 0.84088 0.94051 0.95904 1.86065 1.13126 1.54876 1.71270 1.23392 0.89352 0.96902 0.98058 1.20392 0.90542 1.01520 1.04127 0.91380 0.89773 0.94591 0.88067 0.91075 0.87109 0.90991 0.95444 0.91216 0.90352 0.77363 0.91576 0.95226 0.91718 0.83542 0.82457 0.81837 0.86446 0.91458 0.91097 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.24 71.98 0.74 -1.81 16 2 C 0.11 1.97 6.22 86.38 0.54 2.51 16 3 N -0.60 -14.48 2.47 -825.86 -2.04 -16.52 16 4 C 0.10 1.98 6.03 86.38 0.52 2.50 16 5 C -0.16 -3.27 10.24 71.98 0.74 -2.54 16 6 C 0.61 20.00 7.10 86.62 0.62 20.61 16 7 O -0.56 -20.91 13.24 -4.08 -0.05 -20.97 16 8 C -0.30 -11.18 5.16 -18.78 -0.10 -11.27 16 9 C 0.10 3.64 9.34 84.27 0.79 4.43 16 10 N -0.33 -14.99 3.62 -350.17 -1.27 -16.26 16 11 C 0.27 13.32 6.21 85.63 0.53 13.85 16 12 C -0.55 -30.96 9.21 25.60 0.24 -30.72 16 13 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 14 C 0.03 1.42 5.46 84.65 0.46 1.88 16 15 N -0.92 -50.82 13.29 21.45 0.28 -50.54 16 16 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 N -0.30 -14.57 12.28 -44.52 -0.55 -15.12 16 21 C 0.12 5.10 6.94 44.07 0.31 5.40 16 22 C 0.01 0.31 5.84 -20.07 -0.12 0.19 16 23 C -0.15 -5.07 9.07 22.50 0.20 -4.87 16 24 C -0.08 -2.05 10.03 22.22 0.22 -1.83 16 25 C -0.19 -4.62 9.03 22.41 0.20 -4.41 16 26 C 0.12 3.51 6.68 22.47 0.15 3.66 16 27 O -0.34 -9.23 10.49 -92.44 -0.97 -10.20 16 28 C 0.02 0.26 9.81 113.37 1.11 1.37 16 29 C -0.15 -5.37 9.70 22.59 0.22 -5.15 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.10 1.29 8.11 -2.39 -0.02 1.27 16 34 H 0.07 1.56 7.22 -2.39 -0.02 1.55 16 35 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 36 H 0.07 1.65 4.90 -2.38 -0.01 1.64 16 37 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.21 5.84 7.77 -2.91 -0.02 5.82 16 41 H 0.07 3.14 8.05 -2.39 -0.02 3.12 16 42 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.15 5.44 4.62 -2.91 -0.01 5.43 16 45 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 46 H 0.16 2.60 6.28 -2.91 -0.02 2.58 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 49 H 0.07 0.84 7.66 -2.39 -0.02 0.83 16 50 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -73.13 416.24 5.74 -67.39 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.95 Total: 22.31 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 7.37 Total: -6.19 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -3.57 Total: -98.43 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.02 Total: -31.16 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.13 5.74 -67.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.814 kcal (2) G-P(sol) polarization free energy of solvation -73.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds