Wall clock time and date at job start Tue Mar 31 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00182 * 2 1 4 4 C 1.34778 * 119.99619 * 180.02562 * 2 1 3 5 5 O 1.21614 * 120.00045 * 4.20122 * 4 2 1 6 6 C 1.47272 * 119.99560 * 184.20319 * 4 2 1 7 7 C 1.37981 * 126.81357 * 323.80657 * 6 4 2 8 8 N 1.34136 * 107.89105 * 179.97438 * 7 6 4 9 9 C 1.46494 * 125.15668 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47046 * 124.99918 * 9 8 7 11 11 H 1.07998 * 120.00360 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00196 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99768 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47528 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47186 * 120.00306 * 14 12 10 17 17 H 1.48509 * 109.46778 * 239.99932 * 14 12 10 18 18 N 1.39768 * 109.68019 * 0.26149 * 8 7 6 19 19 C 1.31381 * 109.08496 * 359.54429 * 18 8 7 20 20 C 1.48259 * 126.51845 * 180.12452 * 19 18 8 21 21 C 1.39401 * 120.07703 * 139.99226 * 20 19 18 22 22 C 1.37922 * 119.98561 * 180.02562 * 21 20 19 23 23 C 1.38847 * 120.23990 * 359.97438 * 22 21 20 24 24 C 1.39112 * 120.01356 * 359.87428 * 23 22 21 25 25 C 1.38476 * 119.94460 * 359.92121 * 24 23 22 26 26 O 1.36141 * 120.77240 * 180.36904 * 24 23 22 27 27 C 1.43164 * 116.70121 * 342.54365 * 26 24 23 28 28 C 1.53473 * 108.22948 * 46.30727 * 27 26 24 29 29 O 1.36121 * 119.26882 * 179.65082 * 23 22 21 30 30 H 1.09003 * 109.47058 * 240.00453 * 1 2 3 31 31 H 1.09007 * 109.46946 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47589 * 120.00015 * 1 2 3 33 33 H 1.09004 * 109.47084 * 264.91890 * 3 2 1 34 34 H 1.08998 * 109.47311 * 24.91735 * 3 2 1 35 35 H 1.09000 * 109.47390 * 144.91921 * 3 2 1 36 36 H 1.07995 * 126.05112 * 359.97438 * 7 6 4 37 37 H 1.09008 * 109.47191 * 244.99678 * 9 8 7 38 38 H 1.08994 * 109.47818 * 4.99824 * 9 8 7 39 39 H 0.96993 * 120.00092 * 179.97438 * 13 12 10 40 40 H 1.08000 * 120.00800 * 0.08956 * 21 20 19 41 41 H 1.07996 * 119.88306 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.01249 * 180.18090 * 25 24 23 43 43 H 1.08996 * 109.71606 * 165.99244 * 27 26 24 44 44 H 1.09001 * 109.71235 * 286.62536 * 27 26 24 45 45 H 1.08999 * 109.70159 * 59.93782 * 28 27 26 46 46 H 1.08996 * 109.70606 * 180.55336 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5331 -2.2190 -0.0781 6 6 3.6086 -1.1690 0.0930 7 6 4.4741 -0.2549 -0.4720 8 7 5.7245 -0.6164 -0.1479 9 6 6.9398 0.0939 -0.5533 10 6 7.7489 0.4432 0.6692 11 1 7.3936 0.1636 1.6500 12 6 8.9434 1.1188 0.5355 13 7 9.3770 1.4580 -0.6589 14 14 9.9466 1.5511 2.0508 15 1 9.2458 1.0611 3.2649 16 1 11.2836 0.9114 1.9584 17 1 10.1078 3.0251 2.1338 18 7 5.6921 -1.7773 0.6299 19 6 4.4423 -2.1420 0.8055 20 6 3.9658 -3.3182 1.5721 21 6 2.8313 -3.2157 2.3755 22 6 2.3900 -4.3110 3.0882 23 6 3.0717 -5.5179 3.0086 24 6 4.2027 -5.6267 2.2059 25 6 4.6469 -4.5308 1.4853 26 8 4.8786 -6.8047 2.1107 27 6 4.6246 -7.7763 3.1309 28 6 3.1065 -7.8734 3.3343 29 8 2.6231 -6.5842 3.7260 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 2.4580 1.5378 -1.0237 34 1 1.5721 2.0494 0.4330 35 1 3.1075 1.1629 0.5906 36 1 4.1943 0.6001 -1.0694 37 1 7.5313 -0.5437 -1.2104 38 1 6.6677 1.0074 -1.0819 39 1 10.2171 1.9335 -0.7529 40 1 2.2973 -2.2791 2.4390 41 1 1.5106 -4.2298 3.7098 42 1 5.5231 -4.6148 0.8595 43 1 5.0168 -8.7452 2.8218 44 1 5.1010 -7.4660 4.0609 45 1 2.6297 -8.1772 2.4025 46 1 2.8861 -8.6014 4.1150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:03 Heat of formation + Delta-G solvation = 3.525734 kcal Electronic energy + Delta-G solvation = -31591.828906 eV Core-core repulsion = 27256.387256 eV Total energy + Delta-G solvation = -4335.441649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19461 -40.64536 -38.87943 -37.60904 -37.21885 -35.28073 -33.83398 -32.27576 -31.00199 -30.71572 -30.05843 -28.61458 -27.75746 -27.03976 -25.83672 -24.85321 -23.50583 -22.57622 -21.90182 -20.68422 -19.88603 -19.07830 -18.37715 -17.24544 -17.10706 -16.82542 -16.36276 -16.07345 -15.61292 -15.36361 -15.30645 -15.05535 -14.71367 -14.41716 -14.34307 -14.01426 -13.84482 -13.71608 -13.33075 -13.26214 -13.00812 -12.68179 -12.60942 -12.47617 -12.28363 -11.99335 -11.86949 -11.80794 -11.60442 -11.24777 -11.14648 -11.01726 -10.90821 -10.47202 -10.36235 -10.29307 -9.79151 -9.54084 -9.00214 -8.72482 -8.57086 -8.41571 -8.05519 -7.61757 -6.35185 -4.40896 1.22349 1.50462 2.14839 2.69577 3.01976 3.09635 3.17039 3.18869 3.25565 3.30175 3.37194 3.58444 3.99986 4.13809 4.23530 4.65676 4.66479 4.71089 4.75985 4.95759 5.01205 5.06963 5.09323 5.18075 5.30114 5.35064 5.38006 5.41810 5.54184 5.54765 5.62789 5.68806 5.78056 5.80724 5.92875 6.04963 6.17998 6.28620 6.55893 6.61889 6.63820 6.76959 6.85596 6.93072 7.05983 7.46259 7.50476 7.54412 7.71454 7.73978 8.31215 8.51798 8.67215 9.25915 10.73840 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.007594 B = 0.003501 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3686.392216 B = 7996.096425 C =10923.749595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.625 5.625 3 C 0.073 3.927 4 C 0.599 3.401 5 O -0.538 6.538 6 C -0.306 4.306 7 C 0.093 3.907 8 N -0.311 5.311 9 C 0.250 3.750 10 C -0.532 4.532 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.893 5.893 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.281 1.281 18 N -0.255 5.255 19 C 0.132 3.868 20 C 0.013 3.987 21 C -0.069 4.069 22 C -0.114 4.114 23 C 0.050 3.950 24 C 0.046 3.954 25 C -0.083 4.083 26 O -0.306 6.306 27 C 0.021 3.979 28 C 0.021 3.979 29 O -0.309 6.309 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.179 0.821 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.268 0.732 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -8.428 4.575 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.360 5.360 3 C -0.070 4.070 4 C 0.389 3.611 5 O -0.416 6.416 6 C -0.322 4.322 7 C -0.060 4.060 8 N -0.088 5.088 9 C 0.133 3.867 10 C -0.570 4.570 11 H 0.090 0.910 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.207 1.207 18 N -0.076 5.076 19 C -0.035 4.035 20 C 0.010 3.990 21 C -0.089 4.089 22 C -0.132 4.132 23 C 0.005 3.995 24 C 0.001 3.999 25 C -0.103 4.103 26 O -0.221 6.221 27 C -0.055 4.055 28 C -0.055 4.055 29 O -0.224 6.224 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.189 -9.110 4.633 17.487 hybrid contribution -0.064 0.553 0.389 0.679 sum -14.253 -8.556 5.022 17.366 Atomic orbital electron populations 1.21538 0.79395 1.01743 1.02104 1.47623 1.06590 1.06430 1.75386 1.22063 0.98259 0.84940 1.01737 1.17317 0.85845 0.82734 0.75199 1.90756 1.69938 1.30922 1.49947 1.20840 0.92704 1.02333 1.16312 1.23089 0.85351 0.98535 0.99069 1.49232 1.07167 1.18051 1.34323 1.19934 0.78217 0.91138 0.97386 1.21236 1.05481 1.37523 0.92771 0.91034 1.24931 0.97035 0.95095 0.96804 1.69914 1.21920 1.39263 1.21983 0.86266 0.79834 0.78041 0.82383 1.19428 1.20594 1.20701 1.77473 1.17800 0.99982 1.12387 1.21444 0.89768 0.94246 0.98018 1.17293 0.95218 0.89846 0.96593 1.20742 0.94908 0.98260 0.94958 1.20194 1.00452 0.90221 1.02353 1.18904 0.94058 0.89002 0.97561 1.18632 0.92584 0.87222 1.01462 1.20412 1.00476 0.89003 1.00417 1.86330 1.63960 1.23371 1.48459 1.23586 0.96147 0.93370 0.92398 1.23587 0.94607 0.84365 1.02925 1.86272 1.67710 1.13625 1.54787 0.92414 0.91064 0.92362 0.92683 0.91161 0.90053 0.80453 0.93145 0.92313 0.92229 0.85422 0.84780 0.84300 0.86308 0.90593 0.90592 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.17 59.85 0.61 1.58 16 2 N -0.63 -8.12 3.27 -190.86 -0.62 -8.74 16 3 C 0.07 0.76 9.01 59.84 0.54 1.30 16 4 C 0.60 10.07 6.55 -12.59 -0.08 9.98 16 5 O -0.54 -10.41 15.68 5.26 0.08 -10.33 16 6 C -0.31 -5.56 5.55 -102.94 -0.57 -6.13 16 7 C 0.09 1.62 9.10 -16.64 -0.15 1.47 16 8 N -0.31 -6.63 3.62 -62.04 -0.22 -6.85 16 9 C 0.25 5.88 6.21 -5.20 -0.03 5.85 16 10 C -0.53 -13.96 9.21 -34.44 -0.32 -14.28 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 14 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 N -0.26 -5.70 12.31 34.57 0.43 -5.27 16 19 C 0.13 2.65 6.88 -80.56 -0.55 2.10 16 20 C 0.01 0.24 5.62 -104.93 -0.59 -0.35 16 21 C -0.07 -1.13 8.30 -39.26 -0.33 -1.46 16 22 C -0.11 -1.69 9.94 -39.47 -0.39 -2.08 16 23 C 0.05 0.76 6.50 -39.03 -0.25 0.50 16 24 C 0.05 0.74 6.49 -39.17 -0.25 0.48 16 25 C -0.08 -1.48 9.69 -39.08 -0.38 -1.86 16 26 O -0.31 -4.44 10.42 -32.97 -0.34 -4.78 16 27 C 0.02 0.20 7.26 37.40 0.27 0.47 16 28 C 0.02 0.19 7.26 37.40 0.27 0.46 16 29 O -0.31 -4.06 10.41 -32.90 -0.34 -4.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.51 7.73 -51.93 -0.40 0.11 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.50 7.33 -51.93 -0.38 0.12 16 34 H 0.07 0.55 7.81 -51.93 -0.41 0.14 16 35 H 0.08 0.98 5.86 -51.93 -0.30 0.67 16 36 H 0.18 2.42 6.20 -52.49 -0.33 2.09 16 37 H 0.05 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.06 1.32 8.05 -51.93 -0.42 0.91 16 39 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.13 2.02 7.23 -52.49 -0.38 1.64 16 41 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -33.14 388.48 -7.73 -40.88 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.96 Total: 1.84 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.31 Total: -0.36 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.31 Total: -44.30 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.60 Total: -19.52 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.14 -7.73 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.402 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds