Wall clock time and date at job start Tue Mar 31 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00182 * 2 1 4 4 C 1.34778 * 119.99619 * 180.02562 * 2 1 3 5 5 O 1.21614 * 120.00045 * 4.20122 * 4 2 1 6 6 C 1.47272 * 119.99560 * 184.20319 * 4 2 1 7 7 C 1.37981 * 126.81357 * 323.80657 * 6 4 2 8 8 N 1.34136 * 107.89105 * 179.97438 * 7 6 4 9 9 C 1.46494 * 125.15668 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47046 * 124.99918 * 9 8 7 11 11 H 1.07998 * 120.00360 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00196 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99768 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47528 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47186 * 120.00306 * 14 12 10 17 17 H 1.48509 * 109.46778 * 239.99932 * 14 12 10 18 18 N 1.39768 * 109.68019 * 0.26149 * 8 7 6 19 19 C 1.31381 * 109.08496 * 359.54429 * 18 8 7 20 20 C 1.48259 * 126.51845 * 180.12452 * 19 18 8 21 21 C 1.39401 * 120.07703 * 139.99226 * 20 19 18 22 22 C 1.37922 * 119.98561 * 180.02562 * 21 20 19 23 23 C 1.38847 * 120.23990 * 359.97438 * 22 21 20 24 24 C 1.39112 * 120.01356 * 359.87428 * 23 22 21 25 25 C 1.38476 * 119.94460 * 359.92121 * 24 23 22 26 26 O 1.36141 * 120.77240 * 180.36904 * 24 23 22 27 27 C 1.43164 * 116.70121 * 342.54365 * 26 24 23 28 28 C 1.53473 * 108.22948 * 46.30727 * 27 26 24 29 29 O 1.36121 * 119.26882 * 179.65082 * 23 22 21 30 30 H 1.09003 * 109.47058 * 240.00453 * 1 2 3 31 31 H 1.09007 * 109.46946 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47589 * 120.00015 * 1 2 3 33 33 H 1.09004 * 109.47084 * 264.91890 * 3 2 1 34 34 H 1.08998 * 109.47311 * 24.91735 * 3 2 1 35 35 H 1.09000 * 109.47390 * 144.91921 * 3 2 1 36 36 H 1.07995 * 126.05112 * 359.97438 * 7 6 4 37 37 H 1.09008 * 109.47191 * 244.99678 * 9 8 7 38 38 H 1.08994 * 109.47818 * 4.99824 * 9 8 7 39 39 H 0.96993 * 120.00092 * 179.97438 * 13 12 10 40 40 H 1.08000 * 120.00800 * 0.08956 * 21 20 19 41 41 H 1.07996 * 119.88306 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.01249 * 180.18090 * 25 24 23 43 43 H 1.08996 * 109.71606 * 165.99244 * 27 26 24 44 44 H 1.09001 * 109.71235 * 286.62536 * 27 26 24 45 45 H 1.08999 * 109.70159 * 59.93782 * 28 27 26 46 46 H 1.08996 * 109.70606 * 180.55336 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5331 -2.2190 -0.0781 6 6 3.6086 -1.1690 0.0930 7 6 4.4741 -0.2549 -0.4720 8 7 5.7245 -0.6164 -0.1479 9 6 6.9398 0.0939 -0.5533 10 6 7.7489 0.4432 0.6692 11 1 7.3936 0.1636 1.6500 12 6 8.9434 1.1188 0.5355 13 7 9.3770 1.4580 -0.6589 14 14 9.9466 1.5511 2.0508 15 1 9.2458 1.0611 3.2649 16 1 11.2836 0.9114 1.9584 17 1 10.1078 3.0251 2.1338 18 7 5.6921 -1.7773 0.6299 19 6 4.4423 -2.1420 0.8055 20 6 3.9658 -3.3182 1.5721 21 6 2.8313 -3.2157 2.3755 22 6 2.3900 -4.3110 3.0882 23 6 3.0717 -5.5179 3.0086 24 6 4.2027 -5.6267 2.2059 25 6 4.6469 -4.5308 1.4853 26 8 4.8786 -6.8047 2.1107 27 6 4.6246 -7.7763 3.1309 28 6 3.1065 -7.8734 3.3343 29 8 2.6231 -6.5842 3.7260 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 2.4580 1.5378 -1.0237 34 1 1.5721 2.0494 0.4330 35 1 3.1075 1.1629 0.5906 36 1 4.1943 0.6001 -1.0694 37 1 7.5313 -0.5437 -1.2104 38 1 6.6677 1.0074 -1.0819 39 1 10.2171 1.9335 -0.7529 40 1 2.2973 -2.2791 2.4390 41 1 1.5106 -4.2298 3.7098 42 1 5.5231 -4.6148 0.8595 43 1 5.0168 -8.7452 2.8218 44 1 5.1010 -7.4660 4.0609 45 1 2.6297 -8.1772 2.4025 46 1 2.8861 -8.6014 4.1150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:02 Heat of formation + Delta-G solvation = -17.810545 kcal Electronic energy + Delta-G solvation = -31592.754116 eV Core-core repulsion = 27256.387256 eV Total energy + Delta-G solvation = -4336.366860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35601 -42.01766 -40.15796 -38.80622 -38.26627 -36.42033 -35.68868 -33.88577 -32.10619 -32.08343 -31.37993 -29.86501 -28.92018 -28.36463 -27.00907 -26.00041 -25.06523 -23.94668 -23.13338 -21.99718 -21.15966 -20.34233 -19.51216 -18.71176 -18.36441 -18.19360 -17.75966 -17.35872 -16.84295 -16.54951 -16.50383 -16.32524 -15.95681 -15.87202 -15.46430 -15.40650 -15.01769 -14.91766 -14.55716 -14.46769 -14.25929 -14.11870 -13.88506 -13.60430 -13.41011 -13.32820 -13.02710 -12.98448 -12.88946 -12.76584 -12.64225 -12.32886 -12.28510 -11.99803 -11.88453 -11.58634 -11.48794 -10.89572 -10.75794 -10.49921 -9.72545 -9.65826 -9.42374 -8.94242 -8.35854 -6.48552 -0.07536 0.25329 0.75130 1.26453 1.36391 1.39762 1.50403 1.63133 2.01842 2.09416 2.23150 2.33251 2.35188 2.69526 2.97677 3.25335 3.36754 3.63528 3.65106 3.93726 3.96035 4.05691 4.12593 4.18515 4.21691 4.36311 4.37812 4.46971 4.55315 4.58017 4.59117 4.61775 4.74623 4.81888 4.87146 4.90028 4.97995 5.00337 5.01895 5.04952 5.32653 5.48468 5.51766 5.57748 5.65403 5.78781 5.86216 6.05286 6.35928 6.39805 6.59786 6.78802 7.21522 7.27779 8.72599 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.007594 B = 0.003501 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3686.392216 B = 7996.096425 C =10923.749595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.617 5.617 3 C 0.066 3.934 4 C 0.597 3.403 5 O -0.570 6.570 6 C -0.310 4.310 7 C 0.107 3.893 8 N -0.333 5.333 9 C 0.265 3.735 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.024 3.976 13 N -0.917 5.917 14 Si 0.967 3.033 15 H -0.276 1.276 16 H -0.277 1.277 17 H -0.267 1.267 18 N -0.304 5.304 19 C 0.130 3.870 20 C -0.013 4.013 21 C -0.071 4.071 22 C -0.110 4.110 23 C 0.055 3.945 24 C 0.043 3.957 25 C -0.103 4.103 26 O -0.326 6.326 27 C 0.011 3.989 28 C 0.015 3.985 29 O -0.314 6.314 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.217 0.783 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.273 0.727 40 H 0.131 0.869 41 H 0.162 0.838 42 H 0.122 0.878 43 H 0.155 0.845 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.382 -8.293 5.775 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.350 5.350 3 C -0.077 4.077 4 C 0.387 3.613 5 O -0.451 6.451 6 C -0.326 4.326 7 C -0.044 4.044 8 N -0.110 5.110 9 C 0.147 3.853 10 C -0.585 4.585 11 H 0.071 0.929 12 C -0.177 4.177 13 N -0.556 5.556 14 Si 0.791 3.209 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.192 1.192 18 N -0.125 5.125 19 C -0.038 4.038 20 C -0.015 4.015 21 C -0.090 4.090 22 C -0.129 4.129 23 C 0.010 3.990 24 C -0.002 4.002 25 C -0.123 4.123 26 O -0.241 6.241 27 C -0.063 4.063 28 C -0.059 4.059 29 O -0.229 6.229 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.234 0.766 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.180 0.820 42 H 0.140 0.860 43 H 0.173 0.827 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.158 -8.952 5.834 19.372 hybrid contribution 0.435 0.356 0.058 0.565 sum -15.723 -8.597 5.892 18.864 Atomic orbital electron populations 1.21760 0.77404 1.04191 1.01742 1.47690 1.07883 1.06037 1.73382 1.22279 0.98075 0.84405 1.02892 1.17162 0.85121 0.83573 0.75468 1.90732 1.70158 1.32361 1.51812 1.21113 0.93899 1.01812 1.15762 1.23687 0.83669 0.98979 0.98058 1.48975 1.07650 1.18521 1.35825 1.19535 0.78842 0.90938 0.96011 1.21360 1.06417 1.37803 0.92881 0.92939 1.25639 0.97796 0.94889 0.99372 1.69977 1.22453 1.39711 1.23427 0.85371 0.78188 0.78428 0.78885 1.20096 1.20269 1.19158 1.77395 1.19518 1.01229 1.14355 1.21897 0.89592 0.94756 0.97513 1.17445 0.96519 0.89614 0.97925 1.20782 0.94256 0.99055 0.94947 1.20483 1.00950 0.89563 1.01854 1.18980 0.93364 0.89931 0.96775 1.18628 0.93011 0.87445 1.01085 1.20357 1.00475 0.90034 1.01460 1.86301 1.64102 1.23368 1.50335 1.24031 0.96985 0.93619 0.91715 1.23995 0.93953 0.83135 1.04848 1.86267 1.67747 1.14478 1.54385 0.92689 0.87185 0.92873 0.90819 0.87792 0.91925 0.76633 0.95818 0.91185 0.91786 0.85162 0.81998 0.86032 0.82713 0.90177 0.90165 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 10.17 127.77 1.30 2.93 16 2 N -0.62 -14.82 3.27 -876.01 -2.87 -17.69 16 3 C 0.07 1.18 9.01 127.77 1.15 2.33 16 4 C 0.60 19.90 6.55 86.62 0.57 20.47 16 5 O -0.57 -22.21 15.68 -4.08 -0.06 -22.27 16 6 C -0.31 -11.49 5.55 -18.78 -0.10 -11.60 16 7 C 0.11 3.79 9.10 84.28 0.77 4.56 16 8 N -0.33 -14.76 3.62 -350.20 -1.27 -16.03 16 9 C 0.26 12.93 6.21 85.63 0.53 13.46 16 10 C -0.55 -29.62 9.21 25.60 0.24 -29.38 16 11 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 12 C 0.02 1.28 5.46 84.66 0.46 1.74 16 13 N -0.92 -50.12 13.29 21.45 0.28 -49.83 16 14 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 N -0.30 -14.43 12.31 -44.53 -0.55 -14.98 16 19 C 0.13 5.48 6.88 44.07 0.30 5.79 16 20 C -0.01 -0.49 5.62 -20.07 -0.11 -0.61 16 21 C -0.07 -2.37 8.30 22.48 0.19 -2.18 16 22 C -0.11 -3.20 9.94 22.34 0.22 -2.98 16 23 C 0.06 1.64 6.50 22.63 0.15 1.79 16 24 C 0.04 1.43 6.49 22.54 0.15 1.58 16 25 C -0.10 -3.92 9.69 22.59 0.22 -3.70 16 26 O -0.33 -9.42 10.42 -82.93 -0.86 -10.29 16 27 C 0.01 0.19 7.26 72.14 0.52 0.71 16 28 C 0.02 0.23 7.26 72.14 0.52 0.76 16 29 O -0.31 -7.58 10.41 -82.70 -0.86 -8.44 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.12 7.73 -2.38 -0.02 1.10 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.08 7.33 -2.38 -0.02 1.07 16 34 H 0.10 1.20 7.81 -2.39 -0.02 1.18 16 35 H 0.06 1.40 5.86 -2.39 -0.01 1.39 16 36 H 0.22 5.56 6.20 -2.91 -0.02 5.54 16 37 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 3.21 8.05 -2.39 -0.02 3.20 16 39 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 40 H 0.13 4.19 7.23 -2.91 -0.02 4.16 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.77 388.48 3.93 -71.85 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.02 Total: 17.33 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 7.07 Total: 5.67 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.40 Total: -98.53 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.79 Total: -41.00 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -75.77 3.93 -71.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.038 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds