Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 119.99778 * 2 1 4 4 H 1.48502 * 109.46837 * 274.98331 * 3 2 1 5 5 H 1.48497 * 109.47291 * 34.98437 * 3 2 1 6 6 H 1.48500 * 109.47219 * 154.98828 * 3 2 1 7 7 C 1.39907 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 147.60682 * 7 2 1 9 9 C 1.41152 * 119.99660 * 327.60075 * 7 2 1 10 10 C 1.40869 * 120.16075 * 157.94493 * 9 7 2 11 11 C 1.36379 * 119.82549 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16984 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.82963 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00456 * 37.76406 * 13 12 11 15 15 O 1.21276 * 119.99709 * 356.69694 * 14 13 12 16 16 C 1.50700 * 120.00228 * 176.70061 * 14 13 12 17 17 N 1.46503 * 109.47175 * 179.97438 * 16 14 13 18 18 C 1.34009 * 124.21933 * 89.97081 * 17 16 14 19 19 O 1.21537 * 123.82118 * 359.94940 * 18 17 16 20 20 N 1.34978 * 112.36463 * 179.97438 * 18 17 16 21 21 C 1.45942 * 105.99907 * 0.02562 * 20 18 17 22 22 C 1.53569 * 112.01097 * 238.41442 * 21 20 18 23 23 C 1.54502 * 104.08316 * 275.01225 * 22 21 20 24 24 C 1.53967 * 106.66418 * 337.67586 * 23 22 21 25 25 C 1.53569 * 112.01474 * 121.57450 * 21 20 18 26 26 C 1.35205 * 124.22152 * 269.94994 * 17 16 14 27 27 O 1.21233 * 127.46745 * 0.04133 * 26 17 16 28 28 C 1.39473 * 120.33357 * 0.25298 * 12 11 10 29 29 C 1.36376 * 120.16950 * 359.44799 * 28 12 11 30 30 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.08725 * 359.97438 * 10 9 7 32 32 H 1.08007 * 119.91268 * 180.02562 * 11 10 9 33 33 H 0.97005 * 119.99503 * 217.76215 * 13 12 11 34 34 H 1.08999 * 109.47297 * 59.99423 * 16 14 13 35 35 H 1.09002 * 109.46586 * 299.99909 * 16 14 13 36 36 H 0.97003 * 127.00335 * 179.97438 * 20 18 17 37 37 H 1.09006 * 110.50556 * 156.36139 * 22 21 20 38 38 H 1.09001 * 110.50822 * 33.66567 * 22 21 20 39 39 H 1.08998 * 110.01875 * 218.37002 * 23 22 21 40 40 H 1.08998 * 110.01690 * 96.97746 * 23 22 21 41 41 H 1.09000 * 110.02076 * 119.30099 * 24 23 22 42 42 H 1.08996 * 110.01903 * 240.70082 * 24 23 22 43 43 H 1.08993 * 110.50809 * 326.33465 * 25 21 20 44 44 H 1.09006 * 110.50631 * 203.63324 * 25 21 20 45 45 H 1.08002 * 119.91682 * 179.72462 * 28 12 11 46 46 H 1.08005 * 120.08871 * 180.25644 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4121 0.5920 7 6 2.0083 -1.2116 0.0005 8 1 2.9622 -1.2846 -0.5005 9 6 1.4673 -2.3386 0.6561 10 6 1.8854 -3.6348 0.2965 11 6 1.3578 -4.7189 0.9340 12 6 0.4063 -4.5466 1.9392 13 7 -0.1280 -5.6584 2.5850 14 6 0.6572 -6.7176 2.8644 15 8 1.8140 -6.7275 2.5004 16 6 0.0977 -7.8895 3.6290 17 7 1.1416 -8.9028 3.8022 18 6 1.9833 -8.9472 4.8440 19 8 1.9700 -8.1474 5.7590 20 7 2.8479 -9.9805 4.7621 21 6 2.5229 -10.6796 3.5229 22 6 2.1558 -12.1500 3.7709 23 6 3.5184 -12.8777 3.8011 24 6 4.5128 -11.9849 3.0364 25 6 3.7225 -10.7433 2.5662 26 6 1.3756 -9.9100 2.9311 27 8 0.7879 -10.1416 1.8963 28 6 -0.0168 -3.2666 2.2966 29 6 0.5061 -2.1726 1.6724 30 1 -0.4851 0.8400 -0.0004 31 1 2.6211 -3.7699 -0.4825 32 1 1.6776 -5.7134 0.6598 33 1 -1.0655 -5.6706 2.8339 34 1 -0.7371 -8.3193 3.0755 35 1 -0.2488 -7.5536 4.6063 36 1 3.5440 -10.2110 5.3970 37 1 1.5371 -12.5314 2.9586 38 1 1.6431 -12.2597 4.7265 39 1 3.4344 -13.8476 3.3109 40 1 3.8494 -13.0074 4.8315 41 1 5.3258 -11.6818 3.6961 42 1 4.9107 -12.5220 2.1755 43 1 4.3325 -9.8448 2.6584 44 1 3.3844 -10.8727 1.5380 45 1 -0.7572 -3.1412 3.0729 46 1 0.1806 -1.1818 1.9531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005315913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = -56.220561 kcal Electronic energy + Delta-G solvation = -31449.677627 eV Core-core repulsion = 27111.645184 eV Total energy + Delta-G solvation = -4338.032443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.86744 -39.67481 -38.86091 -38.14026 -37.20476 -35.81228 -34.50793 -33.90632 -33.06379 -29.81417 -29.48325 -29.38785 -28.82649 -28.05995 -24.89506 -23.80255 -22.34317 -21.42267 -20.98984 -20.85732 -20.53165 -19.72176 -18.20051 -17.58536 -17.25635 -16.92264 -16.56635 -16.28988 -15.90253 -15.54905 -15.40147 -15.15123 -15.01242 -14.80236 -14.32922 -14.01705 -13.96528 -13.62149 -13.26026 -12.95305 -12.68794 -12.32744 -12.23036 -12.11032 -12.09143 -11.99231 -11.75938 -11.66173 -11.41800 -11.16333 -11.01785 -10.96642 -10.92245 -10.54902 -10.45927 -10.32358 -10.10408 -9.75719 -9.67960 -9.39861 -9.04812 -8.71331 -7.55411 -7.16722 -6.89774 -4.28185 1.42839 1.92025 2.53222 2.81075 2.89721 2.93247 3.04846 3.09271 3.11648 3.31512 3.60365 3.75363 3.88750 3.99864 4.04237 4.48665 4.56221 4.66893 4.81892 4.89190 4.93345 4.94823 5.02758 5.10883 5.22778 5.29668 5.38835 5.46797 5.57483 5.65904 5.67353 5.71331 5.84361 6.18857 6.41118 6.57026 6.74185 6.84775 6.92908 6.99101 7.12220 7.18816 7.27416 7.55164 7.65754 7.86125 7.95944 8.01164 8.22972 8.25390 8.53490 8.69163 8.83145 8.97893 10.01050 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002088 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.796534 B =13409.797627 C =13778.699689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.225 4.225 11 C -0.063 4.063 12 C -0.024 4.024 13 N -0.642 5.642 14 C 0.485 3.515 15 O -0.524 6.524 16 C 0.100 3.900 17 N -0.560 5.560 18 C 0.709 3.291 19 O -0.536 6.536 20 N -0.711 5.711 21 C 0.115 3.885 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.118 4.118 26 C 0.543 3.457 27 O -0.459 6.459 28 C -0.099 4.099 29 C -0.172 4.172 30 H 0.284 0.716 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.396 0.604 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.440 0.560 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -22.522 8.678 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.100 0.900 9 C 0.111 3.889 10 C -0.245 4.245 11 C -0.083 4.083 12 C -0.115 4.115 13 N -0.285 5.285 14 C 0.269 3.731 15 O -0.400 6.400 16 C -0.026 4.026 17 N -0.306 5.306 18 C 0.410 3.590 19 O -0.408 6.408 20 N -0.376 5.376 21 C 0.023 3.977 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.157 4.157 26 C 0.329 3.671 27 O -0.328 6.328 28 C -0.119 4.119 29 C -0.191 4.191 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.229 0.771 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.284 0.716 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.479 -22.026 8.315 23.589 hybrid contribution 0.069 0.868 0.379 0.949 sum 1.549 -21.158 8.694 22.927 Atomic orbital electron populations 1.69941 1.08086 1.29911 1.31163 1.25950 0.94376 1.01553 0.91528 0.86502 0.81543 0.80786 0.79211 1.19442 1.19857 1.18082 1.19512 1.05386 0.93776 1.30502 0.89990 1.17600 0.89655 0.91834 0.89833 1.20590 1.07133 0.92325 1.04422 1.20277 0.96301 0.97934 0.93790 1.17014 1.07610 0.84676 1.02238 1.42790 1.11951 1.15910 1.57877 1.20576 0.86966 0.84404 0.81118 1.90703 1.17240 1.79697 1.52342 1.21482 0.89419 0.87786 1.03894 1.45989 1.33638 1.28000 1.22981 1.15913 0.79338 0.81803 0.81911 1.91023 1.72298 1.42242 1.35280 1.45208 1.37569 1.29827 1.24973 1.21348 0.95318 0.94427 0.86574 1.22499 0.98975 0.90339 1.03756 1.22208 0.93668 0.99128 1.00998 1.22219 0.98042 0.95276 1.00541 1.22498 0.94294 1.00029 0.98866 1.20368 0.83572 0.80128 0.82982 1.90801 1.52128 1.69523 1.20314 1.20165 1.00637 0.91506 0.99613 1.20623 1.02558 0.96660 0.99295 0.90563 0.88755 0.88140 0.77051 0.86034 0.85741 0.71577 0.88935 0.89959 0.90762 0.91231 0.91179 0.90710 0.89526 0.88916 0.89149 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.46 11.78 55.55 0.65 -18.81 16 2 C 0.09 2.18 4.77 -17.34 -0.08 2.10 16 3 Si 0.90 18.34 29.66 -169.99 -5.04 13.30 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.39 8.94 -37.85 -0.34 -12.72 16 8 H 0.08 2.12 8.02 -52.49 -0.42 1.70 16 9 C 0.11 3.08 5.57 -106.80 -0.60 2.48 16 10 C -0.22 -5.85 9.74 -39.26 -0.38 -6.23 16 11 C -0.06 -1.56 8.59 -39.79 -0.34 -1.91 16 12 C -0.02 -0.54 6.25 -83.57 -0.52 -1.06 16 13 N -0.64 -11.46 5.30 -9.74 -0.05 -11.51 16 14 C 0.48 8.70 7.71 -10.99 -0.08 8.61 16 15 O -0.52 -11.62 14.05 5.56 0.08 -11.55 16 16 C 0.10 1.28 6.20 -5.19 -0.03 1.24 16 17 N -0.56 -7.54 2.11 -122.22 -0.26 -7.80 16 18 C 0.71 9.71 8.64 -87.42 -0.76 8.96 16 19 O -0.54 -9.14 17.50 5.33 0.09 -9.05 16 20 N -0.71 -6.75 6.03 -53.62 -0.32 -7.08 16 21 C 0.11 1.05 1.04 -132.88 -0.14 0.91 16 22 C -0.12 -0.73 6.02 -25.65 -0.15 -0.89 16 23 C -0.12 -0.56 6.82 -25.44 -0.17 -0.73 16 24 C -0.12 -0.67 6.82 -25.44 -0.17 -0.85 16 25 C -0.12 -1.00 6.03 -25.65 -0.15 -1.15 16 26 C 0.54 6.89 7.02 -10.99 -0.08 6.81 16 27 O -0.46 -6.77 17.79 5.60 0.10 -6.67 16 28 C -0.10 -2.30 9.90 -39.79 -0.39 -2.69 16 29 C -0.17 -4.44 8.74 -39.26 -0.34 -4.78 16 30 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 31 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.10 2.48 6.45 -52.48 -0.34 2.14 16 33 H 0.40 5.37 8.82 -40.82 -0.36 5.01 16 34 H 0.12 1.21 8.02 -51.93 -0.42 0.79 16 35 H 0.12 1.34 7.87 -51.93 -0.41 0.93 16 36 H 0.44 3.04 8.96 -40.82 -0.37 2.68 16 37 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.84 8.07 -51.93 -0.42 0.43 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.11 2.81 6.52 -52.48 -0.34 2.47 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -34.77 388.40 -9.65 -44.41 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.01 Total: 10.79 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -4.74 Total: -1.89 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.02 Total: -45.20 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: 0.27 Total: -27.27 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.04 Total: 13.30 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.77 -9.65 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005315913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.806 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds