Wall clock time and date at job start Tue Mar 31 2020 05:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 119.99778 * 2 1 4 4 H 1.48502 * 109.46837 * 274.98331 * 3 2 1 5 5 H 1.48497 * 109.47291 * 34.98437 * 3 2 1 6 6 H 1.48500 * 109.47219 * 154.98828 * 3 2 1 7 7 C 1.39907 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 147.60682 * 7 2 1 9 9 C 1.41152 * 119.99660 * 327.60075 * 7 2 1 10 10 C 1.40869 * 120.16075 * 157.94493 * 9 7 2 11 11 C 1.36379 * 119.82549 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16984 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.82963 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00456 * 37.76406 * 13 12 11 15 15 O 1.21276 * 119.99709 * 356.69694 * 14 13 12 16 16 C 1.50700 * 120.00228 * 176.70061 * 14 13 12 17 17 N 1.46503 * 109.47175 * 179.97438 * 16 14 13 18 18 C 1.34009 * 124.21933 * 89.97081 * 17 16 14 19 19 O 1.21537 * 123.82118 * 359.94940 * 18 17 16 20 20 N 1.34978 * 112.36463 * 179.97438 * 18 17 16 21 21 C 1.45942 * 105.99907 * 0.02562 * 20 18 17 22 22 C 1.53569 * 112.01097 * 238.41442 * 21 20 18 23 23 C 1.54502 * 104.08316 * 275.01225 * 22 21 20 24 24 C 1.53967 * 106.66418 * 337.67586 * 23 22 21 25 25 C 1.53569 * 112.01474 * 121.57450 * 21 20 18 26 26 C 1.35205 * 124.22152 * 269.94994 * 17 16 14 27 27 O 1.21233 * 127.46745 * 0.04133 * 26 17 16 28 28 C 1.39473 * 120.33357 * 0.25298 * 12 11 10 29 29 C 1.36376 * 120.16950 * 359.44799 * 28 12 11 30 30 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.08725 * 359.97438 * 10 9 7 32 32 H 1.08007 * 119.91268 * 180.02562 * 11 10 9 33 33 H 0.97005 * 119.99503 * 217.76215 * 13 12 11 34 34 H 1.08999 * 109.47297 * 59.99423 * 16 14 13 35 35 H 1.09002 * 109.46586 * 299.99909 * 16 14 13 36 36 H 0.97003 * 127.00335 * 179.97438 * 20 18 17 37 37 H 1.09006 * 110.50556 * 156.36139 * 22 21 20 38 38 H 1.09001 * 110.50822 * 33.66567 * 22 21 20 39 39 H 1.08998 * 110.01875 * 218.37002 * 23 22 21 40 40 H 1.08998 * 110.01690 * 96.97746 * 23 22 21 41 41 H 1.09000 * 110.02076 * 119.30099 * 24 23 22 42 42 H 1.08996 * 110.01903 * 240.70082 * 24 23 22 43 43 H 1.08993 * 110.50809 * 326.33465 * 25 21 20 44 44 H 1.09006 * 110.50631 * 203.63324 * 25 21 20 45 45 H 1.08002 * 119.91682 * 179.72462 * 28 12 11 46 46 H 1.08005 * 120.08871 * 180.25644 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4121 0.5920 7 6 2.0083 -1.2116 0.0005 8 1 2.9622 -1.2846 -0.5005 9 6 1.4673 -2.3386 0.6561 10 6 1.8854 -3.6348 0.2965 11 6 1.3578 -4.7189 0.9340 12 6 0.4063 -4.5466 1.9392 13 7 -0.1280 -5.6584 2.5850 14 6 0.6572 -6.7176 2.8644 15 8 1.8140 -6.7275 2.5004 16 6 0.0977 -7.8895 3.6290 17 7 1.1416 -8.9028 3.8022 18 6 1.9833 -8.9472 4.8440 19 8 1.9700 -8.1474 5.7590 20 7 2.8479 -9.9805 4.7621 21 6 2.5229 -10.6796 3.5229 22 6 2.1558 -12.1500 3.7709 23 6 3.5184 -12.8777 3.8011 24 6 4.5128 -11.9849 3.0364 25 6 3.7225 -10.7433 2.5662 26 6 1.3756 -9.9100 2.9311 27 8 0.7879 -10.1416 1.8963 28 6 -0.0168 -3.2666 2.2966 29 6 0.5061 -2.1726 1.6724 30 1 -0.4851 0.8400 -0.0004 31 1 2.6211 -3.7699 -0.4825 32 1 1.6776 -5.7134 0.6598 33 1 -1.0655 -5.6706 2.8339 34 1 -0.7371 -8.3193 3.0755 35 1 -0.2488 -7.5536 4.6063 36 1 3.5440 -10.2110 5.3970 37 1 1.5371 -12.5314 2.9586 38 1 1.6431 -12.2597 4.7265 39 1 3.4344 -13.8476 3.3109 40 1 3.8494 -13.0074 4.8315 41 1 5.3258 -11.6818 3.6961 42 1 4.9107 -12.5220 2.1755 43 1 4.3325 -9.8448 2.6584 44 1 3.3844 -10.8727 1.5380 45 1 -0.7572 -3.1412 3.0729 46 1 0.1806 -1.1818 1.9531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005315913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:06 Heat of formation + Delta-G solvation = -79.862492 kcal Electronic energy + Delta-G solvation = -31450.702818 eV Core-core repulsion = 27111.645184 eV Total energy + Delta-G solvation = -4339.057634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.82436 -41.20263 -39.91393 -39.26740 -38.73447 -36.90131 -36.23627 -34.94507 -34.71589 -31.56788 -31.28326 -29.93270 -29.90373 -29.12473 -26.68737 -24.75587 -23.83824 -23.03763 -22.27326 -21.63894 -21.45971 -21.18608 -19.37513 -19.22348 -18.70758 -18.23934 -17.65332 -17.16106 -17.09722 -17.01685 -16.62082 -16.36862 -16.18826 -15.79975 -15.60405 -15.37504 -15.20622 -15.00341 -14.60189 -14.45439 -14.03269 -13.85921 -13.64975 -13.61668 -13.19036 -12.91785 -12.86896 -12.73406 -12.71844 -12.37192 -12.22943 -12.16540 -12.03749 -11.98751 -11.63582 -11.62790 -11.33452 -11.31360 -11.13289 -10.72306 -10.54152 -10.43729 -9.52417 -9.06343 -8.76671 -6.27147 0.43299 0.75789 0.94340 1.09464 1.34325 1.39575 1.52155 1.66175 1.77128 2.06442 2.17919 2.35768 2.60886 2.80135 3.38053 3.39170 3.61676 3.70042 3.79566 4.03594 4.09953 4.18544 4.26695 4.35849 4.37057 4.42952 4.43124 4.48558 4.64691 4.76844 4.85518 4.97513 5.00941 5.06452 5.11096 5.21042 5.23132 5.26226 5.38798 5.43402 5.59738 5.73094 5.81891 5.86283 5.97317 6.03819 6.22355 6.31092 6.56112 6.62714 6.85227 6.94191 6.99089 7.28890 8.17456 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002088 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.796534 B =13409.797627 C =13778.699689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.052 3.948 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.085 3.915 10 C -0.248 4.248 11 C -0.074 4.074 12 C -0.011 4.011 13 N -0.634 5.634 14 C 0.481 3.519 15 O -0.571 6.571 16 C 0.105 3.895 17 N -0.567 5.567 18 C 0.704 3.296 19 O -0.575 6.575 20 N -0.690 5.690 21 C 0.116 3.884 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.121 4.121 26 C 0.535 3.465 27 O -0.485 6.485 28 C -0.097 4.097 29 C -0.190 4.190 30 H 0.296 0.704 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.420 0.580 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.453 0.547 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 -24.027 10.269 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.268 4.268 11 C -0.094 4.094 12 C -0.104 4.104 13 N -0.280 5.280 14 C 0.268 3.732 15 O -0.450 6.450 16 C -0.020 4.020 17 N -0.313 5.313 18 C 0.405 3.595 19 O -0.450 6.450 20 N -0.354 5.354 21 C 0.025 3.975 22 C -0.149 4.149 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.160 4.160 26 C 0.324 3.676 27 O -0.355 6.355 28 C -0.116 4.116 29 C -0.210 4.210 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.258 0.742 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.300 0.700 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.145 0.855 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.984 -23.592 9.917 25.610 hybrid contribution 0.179 1.211 -0.136 1.231 sum 1.163 -22.381 9.781 24.453 Atomic orbital electron populations 1.69930 1.09355 1.31588 1.31005 1.26744 0.95125 1.04473 0.90493 0.85356 0.79583 0.76070 0.79747 1.18288 1.18315 1.18674 1.19708 1.05747 0.95327 1.32287 0.90745 1.17913 0.90722 0.92305 0.90860 1.20707 1.08007 0.92849 1.05211 1.20357 0.97180 0.97222 0.94665 1.17079 1.06088 0.86275 1.00991 1.42690 1.13317 1.14647 1.57313 1.21524 0.86343 0.85109 0.80236 1.90687 1.19486 1.80699 1.54108 1.21626 0.89739 0.85888 1.04775 1.46152 1.33845 1.28116 1.23139 1.16114 0.79781 0.82142 0.81511 1.90994 1.73513 1.43855 1.36684 1.45134 1.36739 1.28489 1.25085 1.21519 0.94234 0.95623 0.86090 1.22540 1.00249 0.87727 1.04381 1.22219 0.91975 0.99103 1.02025 1.22221 0.98113 0.93883 1.01237 1.22521 0.94126 1.00988 0.98339 1.20967 0.84031 0.80095 0.82512 1.90781 1.53239 1.70229 1.21227 1.20458 1.00687 0.90792 0.99702 1.20670 1.03231 0.97272 0.99822 0.89348 0.89161 0.88616 0.74202 0.82666 0.83120 0.69988 0.88984 0.88716 0.89359 0.89568 0.90197 0.89836 0.91336 0.89918 0.85544 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.72 11.78 21.82 0.26 -40.47 16 2 C 0.05 2.60 4.77 85.24 0.41 3.00 16 3 Si 0.97 37.85 29.66 68.60 2.03 39.88 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.50 -27.97 8.94 23.39 0.21 -27.76 16 8 H 0.07 4.07 8.02 -2.91 -0.02 4.05 16 9 C 0.08 4.79 5.57 -21.28 -0.12 4.67 16 10 C -0.25 -13.57 9.74 22.48 0.22 -13.35 16 11 C -0.07 -3.79 8.59 22.13 0.19 -3.60 16 12 C -0.01 -0.51 6.25 38.56 0.24 -0.27 16 13 N -0.63 -21.79 5.30 -303.13 -1.61 -23.39 16 14 C 0.48 16.89 7.71 87.66 0.68 17.57 16 15 O -0.57 -25.73 14.05 -3.02 -0.04 -25.77 16 16 C 0.10 2.49 6.20 85.63 0.53 3.02 16 17 N -0.57 -14.69 2.11 -777.47 -1.64 -16.33 16 18 C 0.70 18.65 8.64 179.23 1.55 20.19 16 19 O -0.57 -19.28 17.50 -3.83 -0.07 -19.35 16 20 N -0.69 -12.13 6.03 -441.72 -2.66 -14.80 16 21 C 0.12 1.97 1.04 3.22 0.00 1.98 16 22 C -0.11 -1.10 6.02 31.30 0.19 -0.91 16 23 C -0.12 -0.67 6.82 31.43 0.21 -0.46 16 24 C -0.12 -1.00 6.82 31.43 0.21 -0.79 16 25 C -0.12 -1.96 6.03 31.30 0.19 -1.77 16 26 C 0.54 13.17 7.02 87.46 0.61 13.78 16 27 O -0.48 -14.08 17.79 -2.89 -0.05 -14.13 16 28 C -0.10 -4.43 9.90 22.13 0.22 -4.21 16 29 C -0.19 -10.04 8.74 22.48 0.20 -9.84 16 30 H 0.30 13.37 8.30 -92.71 -0.77 12.60 16 31 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16 32 H 0.10 4.91 6.45 -2.91 -0.02 4.90 16 33 H 0.42 10.32 8.82 -92.70 -0.82 9.51 16 34 H 0.16 2.65 8.02 -2.39 -0.02 2.63 16 35 H 0.15 2.84 7.87 -2.39 -0.02 2.82 16 36 H 0.45 5.41 8.96 -92.71 -0.83 4.58 16 37 H 0.09 0.98 8.07 -2.38 -0.02 0.96 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.51 8.07 -2.38 -0.02 1.49 16 45 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 46 H 0.10 5.36 6.52 -2.91 -0.02 5.34 16 Total: -1.00 -79.47 388.40 1.36 -78.10 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.60 Total: 34.99 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.74 Total: 1.26 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -5.65 Total: -94.98 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -0.16 Total: -59.25 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -79.47 1.36 -78.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005315913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.760 kcal (2) G-P(sol) polarization free energy of solvation -79.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds