Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86792 * 120.00496 * 2 1 4 4 H 1.48499 * 109.46981 * 265.74320 * 3 2 1 5 5 H 1.48508 * 109.47050 * 25.73959 * 3 2 1 6 6 H 1.48500 * 109.47585 * 145.74167 * 3 2 1 7 7 C 1.38899 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00029 * 337.86625 * 7 2 1 9 9 N 1.37143 * 119.99596 * 157.86806 * 7 2 1 10 10 C 1.34775 * 120.00085 * 152.86741 * 9 7 2 11 11 O 1.21274 * 119.99953 * 174.94931 * 10 9 7 12 12 C 1.50701 * 119.99788 * 354.95052 * 10 9 7 13 13 O 1.45193 * 109.46948 * 180.02562 * 12 10 9 14 14 C 1.34232 * 117.00074 * 179.97438 * 13 12 10 15 15 O 1.20835 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00273 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47228 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.45102 * 55.93331 * 17 16 14 19 19 C 1.54578 * 110.39914 * 293.54612 * 17 16 14 20 20 C 1.55928 * 104.64274 * 241.20709 * 19 17 16 21 21 H 1.09002 * 115.92388 * 160.02966 * 20 19 17 22 22 C 1.55929 * 104.49957 * 288.91347 * 20 19 17 23 23 C 1.54585 * 104.63998 * 70.27426 * 22 20 19 24 24 C 1.55922 * 110.40315 * 178.32010 * 17 16 14 25 25 H 1.08998 * 115.92345 * 317.95294 * 24 17 16 26 26 C 1.56953 * 100.64945 * 33.77818 * 20 19 17 27 27 C 1.39785 * 119.99967 * 332.86245 * 9 7 2 28 28 C 1.38957 * 120.07849 * 117.86399 * 27 9 7 29 29 C 1.38083 * 119.92571 * 179.74351 * 28 27 9 30 30 C 1.38312 * 120.07398 * 0.55929 * 29 28 27 31 31 C 1.38308 * 120.15670 * 359.69577 * 30 29 28 32 32 C 1.38076 * 120.07636 * 0.02562 * 31 30 29 33 33 H 0.96998 * 119.99677 * 0.02562 * 1 2 3 34 34 H 1.08997 * 109.47107 * 60.00109 * 12 10 9 35 35 H 1.09001 * 109.47096 * 300.00504 * 12 10 9 36 36 H 1.08992 * 109.47101 * 59.99755 * 16 14 13 37 37 H 1.09004 * 109.46911 * 299.99479 * 16 14 13 38 38 H 1.09000 * 110.40435 * 359.97438 * 19 17 16 39 39 H 1.09002 * 110.40576 * 122.30294 * 19 17 16 40 40 H 1.08996 * 110.40091 * 189.06260 * 22 20 19 41 41 H 1.08994 * 110.39927 * 311.48940 * 22 20 19 42 42 H 1.09009 * 110.39686 * 118.79413 * 23 22 20 43 43 H 1.08997 * 110.40621 * 241.09150 * 23 22 20 44 44 H 1.09005 * 112.02525 * 63.17732 * 26 20 19 45 45 H 1.08998 * 112.02816 * 189.69232 * 26 20 19 46 46 H 1.08009 * 120.03623 * 0.02828 * 28 27 9 47 47 H 1.08001 * 119.96655 * 180.27394 * 29 28 27 48 48 H 1.08001 * 119.92057 * 179.71754 * 30 29 28 49 49 H 1.07999 * 119.95809 * 180.02562 * 31 30 29 50 50 H 1.07998 * 120.04123 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5859 1.9942 -1.3962 5 1 1.4037 2.6770 0.6081 6 1 3.4980 1.4677 0.7881 7 6 2.0086 -1.2030 0.0005 8 1 1.5283 -2.1036 0.3533 9 7 3.3043 -1.2469 -0.4469 10 6 4.1477 -2.1876 0.0223 11 8 5.2650 -2.2849 -0.4392 12 6 3.7024 -3.1185 1.1206 13 8 4.7824 -4.0321 1.4481 14 6 4.5465 -4.9327 2.4151 15 8 3.4733 -4.9566 2.9698 16 6 5.6206 -5.9134 2.8097 17 6 5.0976 -6.8214 3.9246 18 1 4.1797 -7.3189 3.6115 19 6 4.8551 -6.0053 5.2148 20 6 5.8119 -6.6411 6.2691 21 1 6.0485 -6.0205 7.1334 22 6 5.1801 -8.0321 6.5811 23 6 5.4073 -8.8614 5.2966 24 6 6.1781 -7.8734 4.3207 25 1 6.7227 -8.3312 3.4950 26 6 7.0215 -7.0475 5.3552 27 6 3.7500 -0.3162 -1.3898 28 6 4.7749 0.5652 -1.0677 29 6 5.2164 1.4797 -2.0033 30 6 4.6319 1.5270 -3.2559 31 6 3.6079 0.6548 -3.5782 32 6 3.1654 -0.2661 -2.6495 33 1 -0.4849 0.8401 -0.0004 34 1 2.8345 -3.6865 0.7858 35 1 3.4377 -2.5376 2.0042 36 1 6.4964 -5.3699 3.1640 37 1 5.8940 -6.5198 1.9461 38 1 5.1088 -4.9574 5.0550 39 1 3.8174 -6.1000 5.5350 40 1 5.6846 -8.4972 7.4280 41 1 4.1140 -7.9284 6.7828 42 1 6.0236 -9.7344 5.5120 43 1 4.4530 -9.1674 4.8680 44 1 7.4964 -6.1804 4.8961 45 1 7.7427 -7.6701 5.8845 46 1 5.2288 0.5318 -0.0882 47 1 6.0160 2.1621 -1.7552 48 1 4.9760 2.2464 -3.9842 49 1 3.1541 0.6942 -4.5574 50 1 2.3661 -0.9472 -2.9018 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007646520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = -78.578846 kcal Electronic energy + Delta-G solvation = -31786.863883 eV Core-core repulsion = 27551.402255 eV Total energy + Delta-G solvation = -4235.461628 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81375 -40.04429 -39.52115 -37.72642 -36.06567 -34.96739 -32.76503 -32.22071 -30.39874 -29.99083 -29.58249 -28.48557 -27.78035 -26.40291 -25.08751 -22.54746 -22.04580 -21.81610 -20.51925 -19.89593 -19.31539 -18.86739 -18.18611 -17.44058 -16.52560 -16.49473 -16.06918 -15.95158 -15.79926 -15.36333 -15.15778 -14.91623 -14.68530 -14.03821 -13.77266 -13.70344 -13.04433 -12.97537 -12.79325 -12.73318 -12.65885 -12.61364 -12.37911 -12.02935 -11.86365 -11.67375 -11.49835 -11.31594 -11.13584 -11.10049 -10.98099 -10.95992 -10.75369 -10.72794 -10.62654 -10.50134 -10.35654 -10.28578 -10.04180 -10.00827 -9.44354 -8.96301 -8.53405 -8.31787 -7.75928 -6.65945 -4.25188 1.82546 1.95843 2.44934 2.76073 3.09736 3.24201 3.27353 3.43119 4.07075 4.10792 4.20120 4.29478 4.34154 4.36213 4.78161 4.86000 4.91510 4.98047 5.07019 5.14803 5.18373 5.24188 5.29499 5.39916 5.42218 5.44385 5.51271 5.54726 5.60691 5.61350 5.65382 5.75162 5.77014 5.82841 5.88637 5.91742 5.97015 5.97374 5.99287 6.12213 6.16478 6.18093 6.27029 6.28558 6.55621 6.75495 6.85259 7.01196 7.06369 7.17793 7.52545 7.77273 7.99293 8.09853 8.67734 9.06861 9.35106 10.41529 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.002248 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.982586 B =12455.266594 C =13148.484921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.080 3.920 3 Si 0.861 3.139 4 H -0.251 1.251 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.366 4.366 8 H 0.115 0.885 9 N -0.416 5.416 10 C 0.480 3.520 11 O -0.561 6.561 12 C 0.072 3.928 13 O -0.339 6.339 14 C 0.456 3.544 15 O -0.506 6.506 16 C -0.107 4.107 17 C -0.077 4.077 18 H 0.082 0.918 19 C -0.109 4.109 20 C -0.108 4.108 21 H 0.094 0.906 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.099 4.099 25 H 0.101 0.899 26 C -0.125 4.125 27 C 0.159 3.841 28 C -0.126 4.126 29 C -0.117 4.117 30 C -0.139 4.139 31 C -0.114 4.114 32 C -0.109 4.109 33 H 0.279 0.721 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -10.028 6.602 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.130 4.130 3 Si 0.687 3.313 4 H -0.175 1.175 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.133 0.867 9 N -0.133 5.133 10 C 0.270 3.730 11 O -0.443 6.443 12 C -0.004 4.004 13 O -0.254 6.254 14 C 0.299 3.701 15 O -0.395 6.395 16 C -0.144 4.144 17 C -0.096 4.096 18 H 0.101 0.899 19 C -0.146 4.146 20 C -0.126 4.126 21 H 0.113 0.887 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.117 4.117 25 H 0.119 0.881 26 C -0.163 4.163 27 C 0.067 3.933 28 C -0.146 4.146 29 C -0.135 4.135 30 C -0.157 4.157 31 C -0.132 4.132 32 C -0.129 4.129 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.408 -10.002 6.549 15.851 hybrid contribution -0.228 1.044 0.129 1.077 sum 10.180 -8.958 6.679 15.115 Atomic orbital electron populations 1.69763 1.06345 1.28822 1.42848 1.25193 0.95084 0.98706 0.94003 0.87155 0.80127 0.82917 0.81123 1.17535 1.21828 1.18413 1.19221 0.85495 0.97760 1.46566 0.86745 1.41376 1.11077 1.26701 1.34124 1.19842 0.84623 0.84206 0.84313 1.90625 1.20189 1.73127 1.60345 1.22578 0.87905 0.90846 0.99100 1.86486 1.43833 1.43121 1.51996 1.23746 0.88930 0.80484 0.76985 1.90675 1.26242 1.70206 1.52336 1.21493 0.96664 0.95713 1.00566 1.22126 0.98618 0.94994 0.93839 0.89933 1.22645 0.99543 0.98690 0.93738 1.23609 0.95382 0.96206 0.97393 0.88737 1.22604 1.00604 0.95415 0.97253 1.23078 0.99937 0.97294 0.95422 1.24126 0.95396 0.95189 0.97014 0.88082 1.23571 0.96575 0.99362 0.96760 1.17634 0.94831 0.91537 0.89329 1.21191 0.98252 0.95327 0.99864 1.20848 1.00040 0.98916 0.93725 1.20963 0.97888 1.00128 0.96734 1.20915 0.97351 0.95996 0.98988 1.21182 1.00676 0.99416 0.91639 0.91032 0.88656 0.88156 0.87751 0.87760 0.91983 0.91168 0.92187 0.91699 0.91997 0.91593 0.91054 0.91373 0.86278 0.86410 0.86643 0.86285 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.80 13.96 55.49 0.77 -22.02 16 2 C 0.08 2.09 5.20 -17.48 -0.09 2.00 16 3 Si 0.86 20.33 23.47 -169.99 -3.99 16.34 16 4 H -0.25 -5.78 5.27 56.52 0.30 -5.48 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.12 6.11 56.52 0.35 -5.77 16 7 C -0.37 -9.31 9.12 -14.93 -0.14 -9.45 16 8 H 0.12 2.98 6.90 -52.49 -0.36 2.62 16 9 N -0.42 -10.04 2.49 -58.98 -0.15 -10.18 16 10 C 0.48 11.26 7.53 -10.99 -0.08 11.18 16 11 O -0.56 -14.22 16.07 -14.10 -0.23 -14.44 16 12 C 0.07 1.47 4.62 36.01 0.17 1.64 16 13 O -0.34 -6.39 9.75 -45.91 -0.45 -6.84 16 14 C 0.46 7.27 7.51 36.01 0.27 7.54 16 15 O -0.51 -9.15 14.86 -18.76 -0.28 -9.42 16 16 C -0.11 -1.19 5.12 -27.88 -0.14 -1.33 16 17 C -0.08 -0.79 1.92 -88.23 -0.17 -0.96 16 18 H 0.08 0.94 7.72 -51.93 -0.40 0.54 16 19 C -0.11 -1.18 4.74 -24.34 -0.12 -1.30 16 20 C -0.11 -0.93 5.14 -85.35 -0.44 -1.37 16 21 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 22 C -0.12 -0.97 6.22 -24.33 -0.15 -1.12 16 23 C -0.12 -0.93 6.32 -22.66 -0.14 -1.07 16 24 C -0.10 -0.79 4.71 -83.68 -0.39 -1.19 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 C -0.13 -0.99 6.37 -22.45 -0.14 -1.13 16 27 C 0.16 3.66 2.29 -83.70 -0.19 3.47 16 28 C -0.13 -2.72 5.86 -39.37 -0.23 -2.95 16 29 C -0.12 -2.13 9.55 -39.61 -0.38 -2.51 16 30 C -0.14 -2.35 9.74 -39.53 -0.38 -2.74 16 31 C -0.11 -2.05 9.63 -39.62 -0.38 -2.43 16 32 C -0.11 -2.32 8.49 -39.37 -0.33 -2.66 16 33 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.10 1.90 7.48 -51.93 -0.39 1.52 16 35 H 0.10 2.02 8.13 -51.93 -0.42 1.60 16 36 H 0.10 1.04 7.28 -51.93 -0.38 0.66 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.75 7.41 -51.93 -0.38 0.36 16 39 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.55 7.83 -51.93 -0.41 0.14 16 42 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 44 H 0.07 0.56 7.29 -51.93 -0.38 0.19 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.12 2.59 7.72 -52.48 -0.40 2.19 16 47 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 48 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 49 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 50 H 0.13 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -30.62 392.00 -9.74 -40.36 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.86 Total: 6.69 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.47 Total: -6.38 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.63 Total: -32.21 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.95 Total: -30.71 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -3.99 Total: 16.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.62 -9.74 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007646520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.216 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds