Wall clock time and date at job start Tue Mar 31 2020 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86792 * 120.00496 * 2 1 4 4 H 1.48499 * 109.46981 * 265.74320 * 3 2 1 5 5 H 1.48508 * 109.47050 * 25.73959 * 3 2 1 6 6 H 1.48500 * 109.47585 * 145.74167 * 3 2 1 7 7 C 1.38899 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00029 * 337.86625 * 7 2 1 9 9 N 1.37143 * 119.99596 * 157.86806 * 7 2 1 10 10 C 1.34775 * 120.00085 * 152.86741 * 9 7 2 11 11 O 1.21274 * 119.99953 * 174.94931 * 10 9 7 12 12 C 1.50701 * 119.99788 * 354.95052 * 10 9 7 13 13 O 1.45193 * 109.46948 * 180.02562 * 12 10 9 14 14 C 1.34232 * 117.00074 * 179.97438 * 13 12 10 15 15 O 1.20835 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00273 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47228 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.45102 * 55.93331 * 17 16 14 19 19 C 1.54578 * 110.39914 * 293.54612 * 17 16 14 20 20 C 1.55928 * 104.64274 * 241.20709 * 19 17 16 21 21 H 1.09002 * 115.92388 * 160.02966 * 20 19 17 22 22 C 1.55929 * 104.49957 * 288.91347 * 20 19 17 23 23 C 1.54585 * 104.63998 * 70.27426 * 22 20 19 24 24 C 1.55922 * 110.40315 * 178.32010 * 17 16 14 25 25 H 1.08998 * 115.92345 * 317.95294 * 24 17 16 26 26 C 1.56953 * 100.64945 * 33.77818 * 20 19 17 27 27 C 1.39785 * 119.99967 * 332.86245 * 9 7 2 28 28 C 1.38957 * 120.07849 * 117.86399 * 27 9 7 29 29 C 1.38083 * 119.92571 * 179.74351 * 28 27 9 30 30 C 1.38312 * 120.07398 * 0.55929 * 29 28 27 31 31 C 1.38308 * 120.15670 * 359.69577 * 30 29 28 32 32 C 1.38076 * 120.07636 * 0.02562 * 31 30 29 33 33 H 0.96998 * 119.99677 * 0.02562 * 1 2 3 34 34 H 1.08997 * 109.47107 * 60.00109 * 12 10 9 35 35 H 1.09001 * 109.47096 * 300.00504 * 12 10 9 36 36 H 1.08992 * 109.47101 * 59.99755 * 16 14 13 37 37 H 1.09004 * 109.46911 * 299.99479 * 16 14 13 38 38 H 1.09000 * 110.40435 * 359.97438 * 19 17 16 39 39 H 1.09002 * 110.40576 * 122.30294 * 19 17 16 40 40 H 1.08996 * 110.40091 * 189.06260 * 22 20 19 41 41 H 1.08994 * 110.39927 * 311.48940 * 22 20 19 42 42 H 1.09009 * 110.39686 * 118.79413 * 23 22 20 43 43 H 1.08997 * 110.40621 * 241.09150 * 23 22 20 44 44 H 1.09005 * 112.02525 * 63.17732 * 26 20 19 45 45 H 1.08998 * 112.02816 * 189.69232 * 26 20 19 46 46 H 1.08009 * 120.03623 * 0.02828 * 28 27 9 47 47 H 1.08001 * 119.96655 * 180.27394 * 29 28 27 48 48 H 1.08001 * 119.92057 * 179.71754 * 30 29 28 49 49 H 1.07999 * 119.95809 * 180.02562 * 31 30 29 50 50 H 1.07998 * 120.04123 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.5859 1.9942 -1.3962 5 1 1.4037 2.6770 0.6081 6 1 3.4980 1.4677 0.7881 7 6 2.0086 -1.2030 0.0005 8 1 1.5283 -2.1036 0.3533 9 7 3.3043 -1.2469 -0.4469 10 6 4.1477 -2.1876 0.0223 11 8 5.2650 -2.2849 -0.4392 12 6 3.7024 -3.1185 1.1206 13 8 4.7824 -4.0321 1.4481 14 6 4.5465 -4.9327 2.4151 15 8 3.4733 -4.9566 2.9698 16 6 5.6206 -5.9134 2.8097 17 6 5.0976 -6.8214 3.9246 18 1 4.1797 -7.3189 3.6115 19 6 4.8551 -6.0053 5.2148 20 6 5.8119 -6.6411 6.2691 21 1 6.0485 -6.0205 7.1334 22 6 5.1801 -8.0321 6.5811 23 6 5.4073 -8.8614 5.2966 24 6 6.1781 -7.8734 4.3207 25 1 6.7227 -8.3312 3.4950 26 6 7.0215 -7.0475 5.3552 27 6 3.7500 -0.3162 -1.3898 28 6 4.7749 0.5652 -1.0677 29 6 5.2164 1.4797 -2.0033 30 6 4.6319 1.5270 -3.2559 31 6 3.6079 0.6548 -3.5782 32 6 3.1654 -0.2661 -2.6495 33 1 -0.4849 0.8401 -0.0004 34 1 2.8345 -3.6865 0.7858 35 1 3.4377 -2.5376 2.0042 36 1 6.4964 -5.3699 3.1640 37 1 5.8940 -6.5198 1.9461 38 1 5.1088 -4.9574 5.0550 39 1 3.8174 -6.1000 5.5350 40 1 5.6846 -8.4972 7.4280 41 1 4.1140 -7.9284 6.7828 42 1 6.0236 -9.7344 5.5120 43 1 4.4530 -9.1674 4.8680 44 1 7.4964 -6.1804 4.8961 45 1 7.7427 -7.6701 5.8845 46 1 5.2288 0.5318 -0.0882 47 1 6.0160 2.1621 -1.7552 48 1 4.9760 2.2464 -3.9842 49 1 3.1541 0.6942 -4.5574 50 1 2.3661 -0.9472 -2.9018 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007646520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:49 Heat of formation + Delta-G solvation = -92.924132 kcal Electronic energy + Delta-G solvation = -31787.485941 eV Core-core repulsion = 27551.402255 eV Total energy + Delta-G solvation = -4236.083686 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02446 -41.54555 -40.68671 -39.34346 -37.54227 -36.80522 -34.18907 -33.68448 -31.90418 -31.56784 -30.33108 -29.60750 -28.82471 -27.47820 -26.98241 -23.93191 -23.53656 -22.96856 -21.59930 -21.15271 -20.63178 -19.93260 -19.62544 -18.84942 -18.07859 -17.92549 -17.63274 -17.25484 -16.99775 -16.82130 -16.51149 -15.95522 -15.90336 -15.65994 -15.25650 -15.19450 -14.79895 -14.40029 -14.36451 -14.18667 -14.02157 -13.58617 -13.48055 -13.36873 -13.30660 -12.88793 -12.65489 -12.49809 -12.43009 -12.21153 -12.13331 -12.11048 -11.90367 -11.83769 -11.75698 -11.69400 -11.60431 -11.47745 -11.27769 -11.22139 -10.86978 -10.76651 -10.39905 -9.84495 -9.43661 -8.66528 -6.27252 0.28572 0.44119 1.13603 1.20445 1.31346 1.33781 1.40111 1.58519 2.15944 2.51258 2.73688 2.96713 3.45104 3.52704 3.60150 3.72864 3.78237 3.98465 4.02431 4.05406 4.08179 4.14215 4.19370 4.24971 4.31535 4.41879 4.46800 4.51237 4.52656 4.59290 4.63293 4.64929 4.66103 4.72720 4.86286 4.99080 5.06048 5.08215 5.18744 5.24130 5.24892 5.26955 5.30460 5.37656 5.40225 5.43506 5.46584 5.54315 5.56083 5.57365 5.81762 5.94275 6.21895 6.63900 6.73279 7.13376 7.47458 8.44070 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.002248 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.982586 B =12455.266594 C =13148.484921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.049 3.951 3 Si 0.910 3.090 4 H -0.237 1.237 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.422 5.422 10 C 0.476 3.524 11 O -0.584 6.584 12 C 0.081 3.919 13 O -0.349 6.349 14 C 0.452 3.548 15 O -0.533 6.533 16 C -0.099 4.099 17 C -0.077 4.077 18 H 0.066 0.934 19 C -0.113 4.113 20 C -0.107 4.107 21 H 0.100 0.900 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.090 4.090 25 H 0.121 0.879 26 C -0.121 4.121 27 C 0.120 3.880 28 C -0.148 4.148 29 C -0.115 4.115 30 C -0.124 4.124 31 C -0.110 4.110 32 C -0.132 4.132 33 H 0.283 0.717 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.155 0.845 48 H 0.165 0.835 49 H 0.156 0.844 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.129 -9.455 5.480 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.161 1.161 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.114 0.886 9 N -0.139 5.139 10 C 0.267 3.733 11 O -0.467 6.467 12 C 0.004 3.996 13 O -0.265 6.265 14 C 0.297 3.703 15 O -0.422 6.422 16 C -0.136 4.136 17 C -0.095 4.095 18 H 0.085 0.915 19 C -0.150 4.150 20 C -0.125 4.125 21 H 0.118 0.882 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.108 4.108 25 H 0.139 0.861 26 C -0.158 4.158 27 C 0.029 3.971 28 C -0.168 4.168 29 C -0.133 4.133 30 C -0.142 4.142 31 C -0.128 4.128 32 C -0.151 4.151 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.172 0.828 48 H 0.183 0.817 49 H 0.174 0.826 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.108 -9.431 5.419 17.033 hybrid contribution -1.038 0.847 0.426 1.406 sum 12.069 -8.584 5.845 15.922 Atomic orbital electron populations 1.69815 1.07392 1.29639 1.44620 1.25661 0.95466 1.00944 0.93773 0.86380 0.78711 0.79843 0.81561 1.16095 1.22140 1.18986 1.19107 0.86079 0.97292 1.46607 0.88638 1.41407 1.10517 1.27211 1.34742 1.20204 0.84374 0.84190 0.84560 1.90580 1.20991 1.73797 1.61349 1.22309 0.88367 0.90864 0.98041 1.86518 1.43217 1.43505 1.53247 1.24835 0.89794 0.80054 0.75637 1.90665 1.27769 1.70773 1.52973 1.21702 0.95317 0.94816 1.01734 1.22137 0.99060 0.95318 0.93023 0.91516 1.22635 0.99032 0.98087 0.95282 1.23641 0.95385 0.96352 0.97148 0.88206 1.22609 1.00048 0.95181 0.98080 1.23096 0.99930 0.97725 0.95012 1.24177 0.94559 0.94415 0.97602 0.86075 1.23578 0.96265 0.99584 0.96386 1.17984 0.96674 0.92376 0.90017 1.21291 0.98408 0.96608 1.00461 1.21346 1.00420 0.98095 0.93478 1.21555 0.96130 0.99648 0.96885 1.21396 0.97167 0.94576 0.99666 1.21306 1.00974 1.00799 0.92069 0.90664 0.88869 0.88470 0.85890 0.85312 0.93712 0.93286 0.90795 0.92865 0.90323 0.92353 0.90935 0.89745 0.87661 0.82752 0.81736 0.82640 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.80 13.96 21.65 0.30 -48.50 16 2 C 0.05 2.60 5.20 84.91 0.44 3.04 16 3 Si 0.91 42.34 23.47 68.60 1.61 43.95 16 4 H -0.24 -10.35 5.27 99.48 0.52 -9.83 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.26 -12.41 6.11 99.48 0.61 -11.80 16 7 C -0.37 -19.45 9.12 84.02 0.77 -18.68 16 8 H 0.10 5.31 6.90 -2.91 -0.02 5.29 16 9 N -0.42 -21.07 2.49 -458.89 -1.14 -22.21 16 10 C 0.48 23.25 7.53 87.66 0.66 23.91 16 11 O -0.58 -30.36 16.07 15.79 0.25 -30.11 16 12 C 0.08 3.49 4.62 71.24 0.33 3.82 16 13 O -0.35 -13.58 9.75 -45.09 -0.44 -14.02 16 14 C 0.45 14.83 7.51 71.24 0.54 15.37 16 15 O -0.53 -20.25 14.86 21.94 0.33 -19.93 16 16 C -0.10 -2.12 5.12 29.85 0.15 -1.97 16 17 C -0.08 -1.55 1.92 -9.24 -0.02 -1.56 16 18 H 0.07 1.56 7.72 -2.39 -0.02 1.54 16 19 C -0.11 -2.52 4.74 32.15 0.15 -2.37 16 20 C -0.11 -1.76 5.14 -7.38 -0.04 -1.80 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 C -0.12 -1.82 6.22 32.15 0.20 -1.62 16 23 C -0.12 -1.66 6.32 33.23 0.21 -1.45 16 24 C -0.09 -1.24 4.71 -6.30 -0.03 -1.27 16 25 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 26 C -0.12 -1.61 6.37 33.37 0.21 -1.40 16 27 C 0.12 5.57 2.29 38.22 0.09 5.65 16 28 C -0.15 -6.23 5.86 22.41 0.13 -6.09 16 29 C -0.12 -3.79 9.55 22.25 0.21 -3.58 16 30 C -0.12 -3.60 9.74 22.30 0.22 -3.39 16 31 C -0.11 -3.58 9.63 22.25 0.21 -3.36 16 32 C -0.13 -5.52 8.49 22.41 0.19 -5.33 16 33 H 0.28 14.69 8.31 -92.71 -0.77 13.91 16 34 H 0.09 4.00 7.48 -2.39 -0.02 3.98 16 35 H 0.10 4.19 8.13 -2.39 -0.02 4.17 16 36 H 0.12 2.24 7.28 -2.39 -0.02 2.23 16 37 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.04 1.13 7.41 -2.39 -0.02 1.11 16 39 H 0.05 1.27 7.82 -2.39 -0.02 1.25 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.91 7.83 -2.39 -0.02 0.89 16 42 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.06 0.90 7.87 -2.39 -0.02 0.88 16 44 H 0.07 0.97 7.29 -2.38 -0.02 0.95 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 4.61 7.72 -2.91 -0.02 4.59 16 47 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 48 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 49 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 50 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -69.41 392.00 6.19 -63.22 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.65 Total: 29.67 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 4.63 Total: -2.07 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.84 Total: -70.71 kcal Atomic # 8 Polarization: -64.20 SS G_CDS: 0.14 Total: -64.06 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.61 Total: 43.95 kcal Total: -69.41 6.19 -63.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007646520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.700 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds