Wall clock time and date at job start Tue Mar 31 2020 05:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31429 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48504 * 109.46973 * 265.24256 * 3 2 1 5 5 H 1.48498 * 109.47249 * 25.24805 * 3 2 1 6 6 H 1.48499 * 109.46836 * 145.24821 * 3 2 1 7 7 C 1.38885 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00044 * 342.58456 * 7 2 1 9 9 N 1.37138 * 120.00046 * 162.57627 * 7 2 1 10 10 C 1.34776 * 119.99729 * 144.04795 * 9 7 2 11 11 O 1.21284 * 119.99787 * 185.28114 * 10 9 7 12 12 C 1.50700 * 120.00245 * 5.28566 * 10 9 7 13 13 O 1.45200 * 109.47155 * 179.97438 * 12 10 9 14 14 C 1.34220 * 116.99993 * 179.97438 * 13 12 10 15 15 O 1.20829 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47637 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.44786 * 302.66915 * 17 16 14 19 19 C 1.54583 * 110.40250 * 65.05417 * 17 16 14 20 20 C 1.55928 * 104.64498 * 118.79417 * 19 17 16 21 21 H 1.08998 * 115.92242 * 160.84338 * 20 19 17 22 22 C 1.55932 * 104.49604 * 289.72388 * 20 19 17 23 23 C 1.54584 * 104.74454 * 71.02789 * 22 20 19 24 24 C 1.55928 * 110.40578 * 180.27859 * 17 16 14 25 25 H 1.08995 * 115.92091 * 81.17266 * 24 17 16 26 26 C 1.56952 * 101.40727 * 34.01886 * 20 19 17 27 27 C 1.39794 * 120.00333 * 324.05429 * 9 7 2 28 28 C 1.38950 * 120.07836 * 118.99650 * 27 9 7 29 29 C 1.38090 * 119.92137 * 179.75275 * 28 27 9 30 30 C 1.38308 * 120.07496 * 0.54701 * 29 28 27 31 31 C 1.38311 * 120.15659 * 359.70461 * 30 29 28 32 32 C 1.38078 * 120.07792 * 0.02562 * 31 30 29 33 33 H 0.96998 * 119.99901 * 359.97438 * 1 2 3 34 34 H 1.09000 * 109.47119 * 59.99713 * 12 10 9 35 35 H 1.08999 * 109.46646 * 299.99593 * 12 10 9 36 36 H 1.09000 * 109.46876 * 59.99956 * 16 14 13 37 37 H 1.08997 * 109.47169 * 300.00191 * 16 14 13 38 38 H 1.09006 * 110.40318 * 0.02562 * 19 17 16 39 39 H 1.08999 * 110.50121 * 237.63646 * 19 17 16 40 40 H 1.08996 * 110.39676 * 189.87754 * 22 20 19 41 41 H 1.08998 * 110.40009 * 312.17843 * 22 20 19 42 42 H 1.08991 * 110.39861 * 118.84855 * 23 22 20 43 43 H 1.08997 * 110.39719 * 241.26318 * 23 22 20 44 44 H 1.09003 * 112.02741 * 62.98212 * 26 20 19 45 45 H 1.09006 * 112.02268 * 189.50120 * 26 20 19 46 46 H 1.08006 * 120.04218 * 359.97438 * 28 27 9 47 47 H 1.07999 * 119.96295 * 180.25266 * 29 28 27 48 48 H 1.08003 * 119.91995 * 179.72361 * 30 29 28 49 49 H 1.08002 * 119.96071 * 179.97438 * 31 30 29 50 50 H 1.08000 * 120.03963 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.5962 1.9885 -1.3953 5 1 1.3990 2.6796 0.5972 6 1 3.4919 1.4714 0.7981 7 6 2.0087 -1.2028 0.0005 8 1 1.5059 -2.1166 0.2809 9 7 3.3329 -1.2301 -0.3551 10 6 4.1801 -2.0747 0.2659 11 8 5.3670 -2.0325 0.0201 12 6 3.6525 -3.0714 1.2656 13 8 4.7533 -3.8597 1.7901 14 6 4.4508 -4.7995 2.6993 15 8 3.3040 -4.9586 3.0451 16 6 5.5413 -5.6563 3.2890 17 6 4.9322 -6.6395 4.2905 18 1 4.3899 -6.1031 5.0691 19 6 3.9943 -7.6333 3.5678 20 6 4.6279 -9.0340 3.8284 21 1 3.9671 -9.8895 3.6881 22 6 5.9348 -9.0356 2.9778 23 6 6.8816 -8.0570 3.7096 24 6 6.0441 -7.5334 4.9198 25 1 6.6075 -7.0869 5.7391 26 6 5.2198 -8.8437 5.2695 27 6 3.8041 -0.3820 -1.3615 28 6 4.7838 0.5609 -1.0755 29 6 5.2506 1.3936 -2.0733 30 6 4.7360 1.2974 -3.3535 31 6 3.7570 0.3635 -3.6405 32 6 3.2896 -0.4761 -2.6490 33 1 -0.4850 0.8400 0.0004 34 1 2.9345 -3.7303 0.7774 35 1 3.1627 -2.5418 2.0826 36 1 6.2669 -5.0217 3.7977 37 1 6.0384 -6.2105 2.4929 38 1 3.9675 -7.4217 2.4988 39 1 2.9902 -7.5861 3.9892 40 1 6.3688 -10.0350 2.9501 41 1 5.7307 -8.6825 1.9670 42 1 7.7811 -8.5753 4.0415 43 1 7.1414 -7.2219 3.0592 44 1 4.4426 -8.6470 6.0080 45 1 5.8551 -9.6791 5.5640 46 1 5.1824 0.6401 -0.0748 47 1 6.0150 2.1240 -1.8527 48 1 5.0998 1.9530 -4.1310 49 1 3.3571 0.2914 -4.6412 50 1 2.5255 -1.2054 -2.8739 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007646522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:53 Heat of formation + Delta-G solvation = -75.113778 kcal Electronic energy + Delta-G solvation = -31946.274981 eV Core-core repulsion = 27710.963610 eV Total energy + Delta-G solvation = -4235.311371 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94993 -40.05409 -39.50798 -37.71125 -36.06307 -34.96991 -32.47289 -32.21096 -30.39358 -30.13913 -29.89024 -28.76804 -27.74744 -25.90893 -25.04527 -22.47410 -22.06883 -21.88231 -20.65410 -20.21816 -19.33974 -18.44769 -18.15597 -17.53349 -16.72114 -16.44555 -16.21636 -15.86890 -15.83719 -15.46861 -15.05432 -14.79186 -14.55257 -13.98042 -13.79124 -13.69082 -13.21510 -12.99168 -12.79867 -12.77436 -12.70537 -12.49721 -12.25629 -12.06730 -11.85329 -11.60367 -11.56265 -11.43283 -11.18695 -11.12271 -10.99998 -10.95347 -10.74833 -10.70920 -10.66729 -10.38520 -10.29656 -10.22558 -10.06423 -9.99850 -9.40178 -8.97249 -8.55343 -8.29913 -7.71191 -6.63244 -4.32531 1.84327 1.96490 2.44360 2.75128 3.10644 3.23580 3.27033 3.40988 4.07278 4.10538 4.19904 4.28742 4.35050 4.36165 4.85304 4.86349 4.89555 4.96875 5.02293 5.14443 5.18004 5.30486 5.32440 5.35827 5.40906 5.45187 5.50071 5.51205 5.58925 5.65180 5.65872 5.73566 5.76597 5.84253 5.87896 5.92531 5.99221 5.99531 6.03825 6.12958 6.14627 6.19398 6.28416 6.28958 6.56578 6.74883 6.87349 7.02238 7.08578 7.21289 7.54931 7.81743 7.98534 8.09219 8.68176 9.05990 9.34206 10.44373 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002336 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.085457 B =11985.918382 C =12753.415339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.082 3.918 3 Si 0.865 3.135 4 H -0.255 1.255 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.365 4.365 8 H 0.113 0.887 9 N -0.420 5.420 10 C 0.488 3.512 11 O -0.558 6.558 12 C 0.072 3.928 13 O -0.340 6.340 14 C 0.456 3.544 15 O -0.506 6.506 16 C -0.111 4.111 17 C -0.076 4.076 18 H 0.082 0.918 19 C -0.107 4.107 20 C -0.109 4.109 21 H 0.094 0.906 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.098 4.098 25 H 0.099 0.901 26 C -0.123 4.123 27 C 0.158 3.842 28 C -0.126 4.126 29 C -0.117 4.117 30 C -0.141 4.141 31 C -0.115 4.115 32 C -0.112 4.112 33 H 0.279 0.721 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 -11.434 5.050 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.128 4.128 3 Si 0.691 3.309 4 H -0.179 1.179 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.130 0.870 9 N -0.138 5.138 10 C 0.278 3.722 11 O -0.439 6.439 12 C -0.005 4.005 13 O -0.255 6.255 14 C 0.298 3.702 15 O -0.394 6.394 16 C -0.148 4.148 17 C -0.094 4.094 18 H 0.101 0.899 19 C -0.145 4.145 20 C -0.127 4.127 21 H 0.112 0.888 22 C -0.160 4.160 23 C -0.169 4.169 24 C -0.116 4.116 25 H 0.117 0.883 26 C -0.161 4.161 27 C 0.066 3.934 28 C -0.146 4.146 29 C -0.135 4.135 30 C -0.159 4.159 31 C -0.134 4.134 32 C -0.132 4.132 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.139 0.861 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.137 0.863 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.074 -11.360 5.022 15.993 hybrid contribution -0.165 1.054 -0.011 1.067 sum 9.909 -10.307 5.012 15.150 Atomic orbital electron populations 1.69717 1.06257 1.28750 1.43603 1.25259 0.95130 0.98699 0.93725 0.87054 0.80109 0.82865 0.80872 1.17942 1.21675 1.18331 1.19171 0.82916 0.96949 1.49980 0.86979 1.41304 1.09138 1.33919 1.29424 1.19979 0.85815 0.84240 0.82172 1.90628 1.15472 1.72800 1.65046 1.22565 0.86906 0.92982 0.98027 1.86480 1.40076 1.45467 1.53470 1.23755 0.90385 0.79021 0.77019 1.90675 1.22312 1.67526 1.58885 1.21640 0.96157 0.96804 1.00216 1.21984 0.95948 0.94726 0.96748 0.89914 1.22620 0.98599 0.92935 1.00346 1.23603 0.96314 0.97517 0.95240 0.88771 1.22635 0.95456 0.99111 0.98819 1.22842 0.97759 0.99099 0.97216 1.23918 0.95641 0.95187 0.96870 0.88332 1.23848 0.98849 0.96873 0.96510 1.17736 0.94881 0.92193 0.88552 1.21242 0.98442 0.95094 0.99814 1.20865 1.00105 0.99415 0.93133 1.20964 0.98590 0.99822 0.96539 1.20915 0.97541 0.96218 0.98695 1.21167 1.00731 1.00003 0.91261 0.91048 0.88695 0.87845 0.87721 0.87188 0.91830 0.91286 0.92110 0.91767 0.91719 0.90917 0.91334 0.91186 0.86087 0.86464 0.86673 0.86293 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.05 13.96 55.49 0.77 -22.28 16 2 C 0.08 2.14 5.36 -17.48 -0.09 2.05 16 3 Si 0.87 20.62 23.77 -169.99 -4.04 16.58 16 4 H -0.26 -5.99 6.48 56.52 0.37 -5.62 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.17 6.02 56.52 0.34 -5.83 16 7 C -0.37 -9.29 8.90 -14.94 -0.13 -9.42 16 8 H 0.11 2.92 7.19 -52.48 -0.38 2.54 16 9 N -0.42 -10.11 2.37 -58.98 -0.14 -10.25 16 10 C 0.49 11.40 7.57 -10.99 -0.08 11.31 16 11 O -0.56 -14.02 15.80 -14.11 -0.22 -14.24 16 12 C 0.07 1.46 4.56 36.01 0.16 1.62 16 13 O -0.34 -6.37 9.75 -45.88 -0.45 -6.82 16 14 C 0.46 7.25 7.47 36.00 0.27 7.52 16 15 O -0.51 -9.11 14.78 -18.75 -0.28 -9.38 16 16 C -0.11 -1.25 4.48 -27.88 -0.13 -1.37 16 17 C -0.08 -0.78 2.35 -88.22 -0.21 -0.98 16 18 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 19 C -0.11 -1.17 4.69 -24.33 -0.11 -1.28 16 20 C -0.11 -0.94 5.14 -85.35 -0.44 -1.38 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.12 -1.01 6.20 -24.33 -0.15 -1.16 16 23 C -0.13 -1.03 5.92 -24.18 -0.14 -1.17 16 24 C -0.10 -0.79 4.94 -84.17 -0.42 -1.20 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 C -0.12 -0.97 6.55 -21.43 -0.14 -1.11 16 27 C 0.16 3.65 2.44 -83.69 -0.20 3.44 16 28 C -0.13 -2.74 5.54 -39.37 -0.22 -2.96 16 29 C -0.12 -2.15 9.77 -39.61 -0.39 -2.53 16 30 C -0.14 -2.39 10.04 -39.53 -0.40 -2.79 16 31 C -0.12 -2.06 10.04 -39.61 -0.40 -2.45 16 32 C -0.11 -2.35 9.30 -39.37 -0.37 -2.72 16 33 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.10 1.86 7.80 -51.93 -0.41 1.46 16 35 H 0.10 2.10 8.02 -51.93 -0.42 1.68 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 1.12 5.89 -51.93 -0.31 0.81 16 38 H 0.06 0.77 7.01 -51.93 -0.36 0.41 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.58 5.35 -51.93 -0.28 0.30 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.12 2.70 7.42 -52.48 -0.39 2.31 16 47 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 48 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 49 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 50 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -30.52 391.54 -9.70 -40.22 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.67 Total: 6.86 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -3.58 Total: -6.58 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.63 Total: -32.53 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.95 Total: -30.45 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.04 Total: 16.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.52 -9.70 -40.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007646522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds