Wall clock time and date at job start Tue Mar 31 2020 05:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31429 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48504 * 109.46973 * 265.24256 * 3 2 1 5 5 H 1.48498 * 109.47249 * 25.24805 * 3 2 1 6 6 H 1.48499 * 109.46836 * 145.24821 * 3 2 1 7 7 C 1.38885 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00044 * 342.58456 * 7 2 1 9 9 N 1.37138 * 120.00046 * 162.57627 * 7 2 1 10 10 C 1.34776 * 119.99729 * 144.04795 * 9 7 2 11 11 O 1.21284 * 119.99787 * 185.28114 * 10 9 7 12 12 C 1.50700 * 120.00245 * 5.28566 * 10 9 7 13 13 O 1.45200 * 109.47155 * 179.97438 * 12 10 9 14 14 C 1.34220 * 116.99993 * 179.97438 * 13 12 10 15 15 O 1.20829 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47637 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.44786 * 302.66915 * 17 16 14 19 19 C 1.54583 * 110.40250 * 65.05417 * 17 16 14 20 20 C 1.55928 * 104.64498 * 118.79417 * 19 17 16 21 21 H 1.08998 * 115.92242 * 160.84338 * 20 19 17 22 22 C 1.55932 * 104.49604 * 289.72388 * 20 19 17 23 23 C 1.54584 * 104.74454 * 71.02789 * 22 20 19 24 24 C 1.55928 * 110.40578 * 180.27859 * 17 16 14 25 25 H 1.08995 * 115.92091 * 81.17266 * 24 17 16 26 26 C 1.56952 * 101.40727 * 34.01886 * 20 19 17 27 27 C 1.39794 * 120.00333 * 324.05429 * 9 7 2 28 28 C 1.38950 * 120.07836 * 118.99650 * 27 9 7 29 29 C 1.38090 * 119.92137 * 179.75275 * 28 27 9 30 30 C 1.38308 * 120.07496 * 0.54701 * 29 28 27 31 31 C 1.38311 * 120.15659 * 359.70461 * 30 29 28 32 32 C 1.38078 * 120.07792 * 0.02562 * 31 30 29 33 33 H 0.96998 * 119.99901 * 359.97438 * 1 2 3 34 34 H 1.09000 * 109.47119 * 59.99713 * 12 10 9 35 35 H 1.08999 * 109.46646 * 299.99593 * 12 10 9 36 36 H 1.09000 * 109.46876 * 59.99956 * 16 14 13 37 37 H 1.08997 * 109.47169 * 300.00191 * 16 14 13 38 38 H 1.09006 * 110.40318 * 0.02562 * 19 17 16 39 39 H 1.08999 * 110.50121 * 237.63646 * 19 17 16 40 40 H 1.08996 * 110.39676 * 189.87754 * 22 20 19 41 41 H 1.08998 * 110.40009 * 312.17843 * 22 20 19 42 42 H 1.08991 * 110.39861 * 118.84855 * 23 22 20 43 43 H 1.08997 * 110.39719 * 241.26318 * 23 22 20 44 44 H 1.09003 * 112.02741 * 62.98212 * 26 20 19 45 45 H 1.09006 * 112.02268 * 189.50120 * 26 20 19 46 46 H 1.08006 * 120.04218 * 359.97438 * 28 27 9 47 47 H 1.07999 * 119.96295 * 180.25266 * 29 28 27 48 48 H 1.08003 * 119.91995 * 179.72361 * 30 29 28 49 49 H 1.08002 * 119.96071 * 179.97438 * 31 30 29 50 50 H 1.08000 * 120.03963 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.5962 1.9885 -1.3953 5 1 1.3990 2.6796 0.5972 6 1 3.4919 1.4714 0.7981 7 6 2.0087 -1.2028 0.0005 8 1 1.5059 -2.1166 0.2809 9 7 3.3329 -1.2301 -0.3551 10 6 4.1801 -2.0747 0.2659 11 8 5.3670 -2.0325 0.0201 12 6 3.6525 -3.0714 1.2656 13 8 4.7533 -3.8597 1.7901 14 6 4.4508 -4.7995 2.6993 15 8 3.3040 -4.9586 3.0451 16 6 5.5413 -5.6563 3.2890 17 6 4.9322 -6.6395 4.2905 18 1 4.3899 -6.1031 5.0691 19 6 3.9943 -7.6333 3.5678 20 6 4.6279 -9.0340 3.8284 21 1 3.9671 -9.8895 3.6881 22 6 5.9348 -9.0356 2.9778 23 6 6.8816 -8.0570 3.7096 24 6 6.0441 -7.5334 4.9198 25 1 6.6075 -7.0869 5.7391 26 6 5.2198 -8.8437 5.2695 27 6 3.8041 -0.3820 -1.3615 28 6 4.7838 0.5609 -1.0755 29 6 5.2506 1.3936 -2.0733 30 6 4.7360 1.2974 -3.3535 31 6 3.7570 0.3635 -3.6405 32 6 3.2896 -0.4761 -2.6490 33 1 -0.4850 0.8400 0.0004 34 1 2.9345 -3.7303 0.7774 35 1 3.1627 -2.5418 2.0826 36 1 6.2669 -5.0217 3.7977 37 1 6.0384 -6.2105 2.4929 38 1 3.9675 -7.4217 2.4988 39 1 2.9902 -7.5861 3.9892 40 1 6.3688 -10.0350 2.9501 41 1 5.7307 -8.6825 1.9670 42 1 7.7811 -8.5753 4.0415 43 1 7.1414 -7.2219 3.0592 44 1 4.4426 -8.6470 6.0080 45 1 5.8551 -9.6791 5.5640 46 1 5.1824 0.6401 -0.0748 47 1 6.0150 2.1240 -1.8527 48 1 5.0998 1.9530 -4.1310 49 1 3.3571 0.2914 -4.6412 50 1 2.5255 -1.2054 -2.8739 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007646522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:52 Heat of formation + Delta-G solvation = -89.167424 kcal Electronic energy + Delta-G solvation = -31946.884392 eV Core-core repulsion = 27710.963610 eV Total energy + Delta-G solvation = -4235.920783 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.08558 -41.58374 -40.72901 -39.32279 -37.53900 -36.80798 -34.18563 -33.41246 -31.90045 -31.54733 -30.79844 -29.67454 -29.07837 -27.13839 -26.73925 -23.86342 -23.53383 -22.96136 -21.84488 -21.17386 -20.90757 -19.90723 -19.25963 -18.88053 -18.09454 -17.92738 -17.64393 -17.36492 -17.10350 -16.96904 -16.43915 -16.00050 -15.78806 -15.44932 -15.37364 -15.05567 -14.80033 -14.43267 -14.34590 -14.23024 -14.01077 -13.62670 -13.57561 -13.48143 -13.05210 -12.91181 -12.67379 -12.50658 -12.41052 -12.36210 -12.21436 -12.09286 -11.91345 -11.89025 -11.84647 -11.67671 -11.56159 -11.41769 -11.27415 -11.08102 -10.81921 -10.76180 -10.38566 -9.83427 -9.40161 -8.64954 -6.35134 0.30418 0.44439 1.12858 1.20178 1.29023 1.31800 1.38459 1.56563 2.14618 2.51194 2.73800 2.96096 3.42454 3.52902 3.59640 3.71975 3.80003 3.99556 4.03862 4.06321 4.07504 4.09928 4.19329 4.25689 4.32585 4.40119 4.45060 4.53685 4.54645 4.59850 4.63450 4.64420 4.68796 4.68867 4.85447 5.00697 5.04077 5.08986 5.20535 5.24962 5.28906 5.29207 5.30921 5.35139 5.38118 5.47770 5.48033 5.55056 5.57068 5.57771 5.86097 5.94258 6.21901 6.63395 6.73289 7.12049 7.46358 8.45829 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002336 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.085457 B =11985.918382 C =12753.415339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.050 3.950 3 Si 0.913 3.087 4 H -0.245 1.245 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.426 5.426 10 C 0.484 3.516 11 O -0.580 6.580 12 C 0.080 3.920 13 O -0.349 6.349 14 C 0.452 3.548 15 O -0.531 6.531 16 C -0.103 4.103 17 C -0.076 4.076 18 H 0.070 0.930 19 C -0.112 4.112 20 C -0.108 4.108 21 H 0.099 0.901 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.089 4.089 25 H 0.117 0.883 26 C -0.119 4.119 27 C 0.120 3.880 28 C -0.148 4.148 29 C -0.116 4.116 30 C -0.126 4.126 31 C -0.110 4.110 32 C -0.133 4.133 33 H 0.283 0.717 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.153 0.847 48 H 0.164 0.836 49 H 0.157 0.843 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.587 -10.926 4.207 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.157 4.157 3 Si 0.738 3.262 4 H -0.169 1.169 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.487 4.487 8 H 0.112 0.888 9 N -0.144 5.144 10 C 0.274 3.726 11 O -0.462 6.462 12 C 0.004 3.996 13 O -0.265 6.265 14 C 0.297 3.703 15 O -0.420 6.420 16 C -0.139 4.139 17 C -0.094 4.094 18 H 0.089 0.911 19 C -0.149 4.149 20 C -0.126 4.126 21 H 0.117 0.883 22 C -0.161 4.161 23 C -0.168 4.168 24 C -0.107 4.107 25 H 0.135 0.865 26 C -0.156 4.156 27 C 0.029 3.971 28 C -0.168 4.168 29 C -0.135 4.135 30 C -0.144 4.144 31 C -0.128 4.128 32 C -0.153 4.153 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.122 0.878 47 H 0.170 0.830 48 H 0.182 0.818 49 H 0.175 0.825 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.608 -10.855 4.169 17.152 hybrid contribution -0.914 0.849 0.167 1.259 sum 11.694 -10.006 4.336 15.990 Atomic orbital electron populations 1.69771 1.07237 1.29529 1.45425 1.25707 0.95511 1.00849 0.93626 0.86302 0.78695 0.80067 0.81099 1.16878 1.21756 1.19093 1.19046 0.83529 0.96395 1.49727 0.88812 1.41337 1.08529 1.34372 1.30156 1.20347 0.85602 0.84297 0.82348 1.90586 1.16172 1.73485 1.65987 1.22304 0.87329 0.92730 0.97266 1.86512 1.39472 1.46120 1.54434 1.24808 0.91359 0.78270 0.75888 1.90664 1.23790 1.68038 1.59524 1.21847 0.94862 0.96464 1.00766 1.22005 0.96758 0.94570 0.96116 0.91144 1.22610 0.98215 0.95108 0.99000 1.23627 0.96535 0.96099 0.96341 0.88256 1.22648 0.95264 1.00033 0.98165 1.22863 0.98093 0.99020 0.96850 1.23948 0.94896 0.94510 0.97349 0.86520 1.23850 0.98905 0.97269 0.95595 1.18075 0.96738 0.93145 0.89105 1.21300 0.98944 0.96330 1.00241 1.21347 1.00265 0.98904 0.92955 1.21549 0.96836 0.99097 0.96950 1.21405 0.96997 0.94914 0.99486 1.21317 1.01172 1.01203 0.91583 0.90694 0.88680 0.88333 0.85395 0.85689 0.93772 0.93140 0.90813 0.92891 0.90061 0.91100 0.91634 0.89504 0.87842 0.82978 0.81801 0.82526 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.20 13.96 21.65 0.30 -48.90 16 2 C 0.05 2.68 5.36 84.91 0.46 3.13 16 3 Si 0.91 43.04 23.77 68.60 1.63 44.67 16 4 H -0.24 -10.98 6.48 99.48 0.64 -10.34 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.70 6.02 99.48 0.60 -12.10 16 7 C -0.36 -19.17 8.90 84.02 0.75 -18.42 16 8 H 0.09 5.20 7.19 -2.91 -0.02 5.18 16 9 N -0.43 -21.22 2.37 -458.89 -1.09 -22.31 16 10 C 0.48 23.51 7.57 87.66 0.66 24.17 16 11 O -0.58 -29.94 15.80 15.76 0.25 -29.69 16 12 C 0.08 3.45 4.56 71.24 0.32 3.78 16 13 O -0.35 -13.57 9.75 -44.97 -0.44 -14.01 16 14 C 0.45 14.85 7.47 71.24 0.53 15.38 16 15 O -0.53 -20.10 14.78 21.96 0.32 -19.78 16 16 C -0.10 -2.25 4.48 29.85 0.13 -2.11 16 17 C -0.08 -1.53 2.35 -9.24 -0.02 -1.55 16 18 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 19 C -0.11 -2.51 4.69 32.15 0.15 -2.35 16 20 C -0.11 -1.78 5.14 -7.38 -0.04 -1.82 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 C -0.12 -1.84 6.20 32.15 0.20 -1.64 16 23 C -0.13 -1.72 5.92 32.25 0.19 -1.53 16 24 C -0.09 -1.24 4.94 -6.62 -0.03 -1.27 16 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 26 C -0.12 -1.63 6.55 34.03 0.22 -1.41 16 27 C 0.12 5.57 2.44 38.22 0.09 5.66 16 28 C -0.15 -6.34 5.54 22.41 0.12 -6.21 16 29 C -0.12 -3.90 9.77 22.25 0.22 -3.68 16 30 C -0.13 -3.69 10.04 22.30 0.22 -3.46 16 31 C -0.11 -3.55 10.04 22.25 0.22 -3.33 16 32 C -0.13 -5.51 9.30 22.41 0.21 -5.30 16 33 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.10 4.01 7.80 -2.39 -0.02 3.99 16 35 H 0.10 4.27 8.02 -2.39 -0.02 4.25 16 36 H 0.13 2.25 8.14 -2.39 -0.02 2.24 16 37 H 0.13 2.42 5.89 -2.39 -0.01 2.41 16 38 H 0.04 1.14 7.01 -2.38 -0.02 1.12 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 0.90 7.82 -2.39 -0.02 0.89 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.96 5.35 -2.39 -0.01 0.95 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.10 4.68 7.42 -2.91 -0.02 4.66 16 47 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 48 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 49 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 50 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -68.84 391.54 6.37 -62.47 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.77 Total: 29.50 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 4.62 Total: -1.97 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -0.79 Total: -71.21 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: 0.13 Total: -63.48 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.63 Total: 44.67 kcal Total: -68.84 6.37 -62.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007646522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.693 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds