Wall clock time and date at job start Tue Mar 31 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35809 * 116.99892 * 2 1 4 4 C 1.39082 * 119.87734 * 359.97438 * 3 2 1 5 5 C 1.37588 * 120.28414 * 179.97438 * 4 3 2 6 6 C 1.39918 * 120.03206 * 359.97438 * 5 4 3 7 7 C 1.47267 * 120.11977 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99578 * 179.97438 * 7 6 5 9 9 N 1.34781 * 120.00154 * 359.97438 * 7 6 5 10 10 C 1.39129 * 119.99948 * 185.21244 * 9 7 6 11 11 C 1.39514 * 119.83263 * 33.28400 * 10 9 7 12 12 C 1.36361 * 120.15925 * 180.27908 * 11 10 9 13 13 C 1.40878 * 119.83499 * 359.52181 * 12 11 10 14 14 C 1.41137 * 120.16083 * 180.23575 * 13 12 11 15 15 H 1.08001 * 119.99885 * 205.14841 * 14 13 12 16 16 C 1.39900 * 120.00404 * 25.15618 * 14 13 12 17 17 N 1.30875 * 119.99829 * 17.49607 * 16 14 13 18 18 Si 1.86801 * 120.00364 * 197.49922 * 16 14 13 19 19 H 1.48500 * 109.47058 * 94.67615 * 18 16 14 20 20 H 1.48498 * 109.47284 * 214.68170 * 18 16 14 21 21 H 1.48501 * 109.46764 * 334.68098 * 18 16 14 22 22 C 1.40880 * 119.67574 * 0.47733 * 13 12 11 23 23 C 1.36362 * 119.83075 * 359.75484 * 22 13 12 24 24 C 1.40238 * 119.75625 * 0.27588 * 6 5 4 25 25 O 1.35757 * 120.14034 * 179.72397 * 24 6 5 26 26 C 1.42902 * 116.99529 * 90.00017 * 25 24 6 27 27 C 1.38801 * 119.71452 * 359.44867 * 24 6 5 28 28 O 1.36106 * 120.01319 * 180.26751 * 27 24 6 29 29 C 1.42898 * 117.00333 * 270.27881 * 28 27 24 30 30 H 1.08998 * 109.47256 * 60.00129 * 1 2 3 31 31 H 1.09007 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46873 * 299.99822 * 1 2 3 33 33 H 1.07995 * 119.86046 * 359.95866 * 4 3 2 34 34 H 1.08003 * 119.98737 * 179.97438 * 5 4 3 35 35 H 0.96993 * 119.99890 * 5.21545 * 9 7 6 36 36 H 1.07990 * 119.92230 * 0.02562 * 11 10 9 37 37 H 1.08004 * 120.08349 * 179.72586 * 12 11 10 38 38 H 0.97004 * 119.99953 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08179 * 179.73406 * 22 13 12 40 40 H 1.07995 * 119.91933 * 179.97438 * 23 22 13 41 41 H 1.09003 * 109.46961 * 60.00557 * 26 25 24 42 42 H 1.09009 * 109.46684 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47587 * 299.99715 * 26 25 24 44 44 H 1.09000 * 109.46699 * 60.00797 * 29 28 27 45 45 H 1.09002 * 109.47010 * 180.02562 * 29 28 27 46 46 H 1.08990 * 109.47465 * 300.00425 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2856 2.3749 -0.0005 5 6 1.9015 3.6052 0.0000 6 6 3.2982 3.6892 0.0016 7 6 3.9594 5.0050 0.0027 8 8 5.1736 5.0754 0.0046 9 7 3.2191 6.1313 0.0017 10 6 3.8398 7.3717 -0.1067 11 6 5.0024 7.5020 -0.8669 12 6 5.6194 8.7133 -0.9730 13 6 5.0745 9.8370 -0.3210 14 6 5.7047 11.0951 -0.4302 15 1 5.5654 11.8377 0.3415 16 6 6.5097 11.3804 -1.5383 17 7 6.4164 10.6501 -2.6203 18 14 7.7178 12.8037 -1.4735 19 1 9.0549 12.3000 -1.0691 20 1 7.8113 13.4351 -2.8144 21 1 7.2474 13.8075 -0.4854 22 6 3.9003 9.6976 0.4449 23 6 3.2969 8.4789 0.5458 24 6 4.0660 2.5157 -0.0032 25 8 5.4216 2.5881 -0.0073 26 6 6.0734 2.6201 1.2641 27 6 3.4340 1.2799 0.0021 28 8 4.1732 0.1371 0.0030 29 6 4.5270 -0.4078 -1.2697 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2074 2.3134 -0.0016 34 1 1.3067 4.5067 -0.0009 35 1 2.2535 6.0771 0.0766 36 1 5.4169 6.6405 -1.3691 37 1 6.5218 8.8118 -1.5582 38 1 6.9748 10.8477 -3.3885 39 1 3.4793 10.5537 0.9510 40 1 2.3970 8.3703 1.1328 41 1 5.8301 1.7145 1.8199 42 1 7.1521 2.6775 1.1180 43 1 5.7353 3.4920 1.8239 44 1 5.1159 0.3215 -1.8261 45 1 5.1134 -1.3153 -1.1261 46 1 3.6214 -0.6453 -1.8277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008125665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:45 Heat of formation + Delta-G solvation = -82.578220 kcal Electronic energy + Delta-G solvation = -31346.892331 eV Core-core repulsion = 26975.424183 eV Total energy + Delta-G solvation = -4371.468148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.09886 -39.65295 -38.83710 -37.73906 -37.04318 -36.36013 -34.41669 -32.96115 -30.71215 -30.23908 -29.46944 -28.89457 -27.82097 -27.20309 -26.40029 -25.09106 -23.47513 -22.33955 -21.44663 -20.99759 -19.67628 -18.92097 -17.80414 -17.46999 -17.30000 -16.92691 -16.43289 -16.30347 -15.75728 -15.55468 -15.23597 -15.11511 -14.88297 -14.59769 -14.33700 -14.22253 -13.89987 -13.29628 -13.12251 -13.04588 -12.83637 -12.64305 -12.55327 -12.08767 -12.01781 -11.82294 -11.71468 -11.51040 -11.34416 -11.17380 -11.11787 -11.04186 -10.66940 -10.45750 -9.93964 -9.75719 -9.63093 -9.36738 -9.04853 -8.90269 -8.86056 -8.47087 -7.51293 -6.97786 -6.72518 -4.28666 0.64764 0.77528 2.56338 2.73062 2.87223 3.08475 3.09193 3.12298 3.17390 3.50471 3.68779 3.76251 3.94094 4.05176 4.45826 4.61634 4.64800 4.76018 4.77883 4.89031 5.03869 5.06395 5.11894 5.20441 5.27261 5.43889 5.52732 5.57914 5.69336 5.73250 5.85089 5.88574 5.93574 6.06378 6.14897 6.40662 6.74298 6.81348 7.00452 7.05618 7.15940 7.20093 7.30046 7.58052 7.60493 7.69444 7.97517 8.06626 8.22412 8.32784 8.63700 8.79162 8.89137 9.01896 10.18757 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.002209 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.896087 B =12670.448361 C =13520.944225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.141 3.859 4 C -0.212 4.212 5 C -0.039 4.039 6 C -0.173 4.173 7 C 0.542 3.458 8 O -0.508 6.508 9 N -0.646 5.646 10 C -0.004 4.004 11 C -0.084 4.084 12 C -0.155 4.155 13 C 0.106 3.894 14 C -0.458 4.458 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.790 5.790 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.216 4.216 23 C -0.104 4.104 24 C 0.178 3.822 25 O -0.311 6.311 26 C 0.055 3.945 27 C 0.031 3.969 28 O -0.317 6.317 29 C 0.036 3.964 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.391 0.609 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.281 0.719 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -19.625 3.300 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.094 3.906 4 C -0.231 4.231 5 C -0.058 4.058 6 C -0.177 4.177 7 C 0.330 3.670 8 O -0.384 6.384 9 N -0.290 5.290 10 C -0.096 4.096 11 C -0.104 4.104 12 C -0.174 4.174 13 C 0.103 3.897 14 C -0.487 4.487 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.415 5.415 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.236 4.236 23 C -0.124 4.124 24 C 0.132 3.868 25 O -0.227 6.227 26 C -0.039 4.039 27 C -0.014 4.014 28 O -0.233 6.233 29 C -0.058 4.058 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.225 0.775 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.483 -19.897 3.038 22.250 hybrid contribution -0.515 0.800 -0.143 0.962 sum -9.999 -19.097 2.895 21.750 Atomic orbital electron populations 1.23170 0.78051 1.04293 1.01710 1.86133 1.21539 1.26010 1.87821 1.19416 0.91072 0.85050 0.95034 1.21082 1.00435 0.91335 1.10222 1.21085 0.92839 0.97760 0.94141 1.20409 0.93573 0.94007 1.09760 1.17778 0.87282 0.83198 0.78784 1.90822 1.12860 1.86636 1.48097 1.42868 1.09171 1.04944 1.71998 1.17125 1.00802 0.83377 1.08334 1.20444 0.95136 0.97442 0.97375 1.20980 1.01221 0.90869 1.04370 1.17672 0.89423 0.93065 0.89561 1.19561 1.24522 0.99545 1.05060 0.90361 1.25934 0.96351 0.97635 0.94464 1.69850 1.32790 1.36535 1.02326 0.86293 0.80890 0.81022 0.78477 1.19300 1.20303 1.18578 1.20528 0.98536 0.95646 1.08867 1.20014 0.99676 0.93118 0.99642 1.18728 0.84589 0.89304 0.94215 1.85914 1.13219 1.93567 1.29974 1.22881 0.97587 1.00175 0.83262 1.18157 0.86725 0.86324 1.10236 1.86081 1.70457 1.37375 1.29426 1.23013 0.99608 0.98660 0.84515 0.92299 0.87955 0.92236 0.84126 0.84398 0.77499 0.87877 0.86262 0.90816 0.88640 0.89243 0.93867 0.88693 0.92964 0.93072 0.88909 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -3.11 10.26 -34.02 -0.35 -3.46 16 3 C 0.14 1.64 6.70 -38.98 -0.26 1.38 16 4 C -0.21 -2.06 9.01 -39.51 -0.36 -2.41 16 5 C -0.04 -0.44 9.52 -39.19 -0.37 -0.81 16 6 C -0.17 -2.62 5.89 -104.85 -0.62 -3.24 16 7 C 0.54 10.16 7.48 -12.59 -0.09 10.06 16 8 O -0.51 -11.35 11.62 -16.69 -0.19 -11.55 16 9 N -0.65 -11.67 5.25 -10.75 -0.06 -11.72 16 10 C 0.00 -0.09 6.29 -83.60 -0.53 -0.62 16 11 C -0.08 -2.12 8.57 -39.78 -0.34 -2.46 16 12 C -0.15 -4.17 8.63 -39.26 -0.34 -4.51 16 13 C 0.11 2.84 5.57 -106.80 -0.59 2.24 16 14 C -0.46 -12.16 9.03 -37.86 -0.34 -12.50 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.79 -20.65 10.97 55.55 0.61 -20.04 16 18 Si 0.91 18.81 29.59 -169.99 -5.03 13.77 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 22 C -0.22 -5.23 9.74 -39.26 -0.38 -5.61 16 23 C -0.10 -2.28 9.89 -39.78 -0.39 -2.68 16 24 C 0.18 2.77 5.74 -38.62 -0.22 2.55 16 25 O -0.31 -5.26 8.61 -47.65 -0.41 -5.67 16 26 C 0.05 0.78 10.48 101.05 1.06 1.84 16 27 C 0.03 0.43 5.74 -39.09 -0.22 0.20 16 28 O -0.32 -4.32 9.97 -45.51 -0.45 -4.78 16 29 C 0.04 0.38 11.13 101.05 1.13 1.51 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 31 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 33 H 0.14 0.90 6.27 -52.49 -0.33 0.57 16 34 H 0.14 1.18 6.40 -52.48 -0.34 0.84 16 35 H 0.39 5.44 6.84 -40.82 -0.28 5.16 16 36 H 0.10 2.64 6.38 -52.49 -0.33 2.30 16 37 H 0.12 3.35 6.19 -52.48 -0.32 3.02 16 38 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 43 H 0.05 0.81 7.49 -51.93 -0.39 0.42 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -33.00 388.00 -7.74 -40.74 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.72 Total: 9.01 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.98 Total: -12.15 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.55 Total: -31.77 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.41 Total: -25.45 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.00 -7.74 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.841 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds