Wall clock time and date at job start Tue Mar 31 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35809 * 116.99892 * 2 1 4 4 C 1.39082 * 119.87734 * 359.97438 * 3 2 1 5 5 C 1.37588 * 120.28414 * 179.97438 * 4 3 2 6 6 C 1.39918 * 120.03206 * 359.97438 * 5 4 3 7 7 C 1.47267 * 120.11977 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99578 * 179.97438 * 7 6 5 9 9 N 1.34781 * 120.00154 * 359.97438 * 7 6 5 10 10 C 1.39129 * 119.99948 * 185.21244 * 9 7 6 11 11 C 1.39514 * 119.83263 * 33.28400 * 10 9 7 12 12 C 1.36361 * 120.15925 * 180.27908 * 11 10 9 13 13 C 1.40878 * 119.83499 * 359.52181 * 12 11 10 14 14 C 1.41137 * 120.16083 * 180.23575 * 13 12 11 15 15 H 1.08001 * 119.99885 * 205.14841 * 14 13 12 16 16 C 1.39900 * 120.00404 * 25.15618 * 14 13 12 17 17 N 1.30875 * 119.99829 * 17.49607 * 16 14 13 18 18 Si 1.86801 * 120.00364 * 197.49922 * 16 14 13 19 19 H 1.48500 * 109.47058 * 94.67615 * 18 16 14 20 20 H 1.48498 * 109.47284 * 214.68170 * 18 16 14 21 21 H 1.48501 * 109.46764 * 334.68098 * 18 16 14 22 22 C 1.40880 * 119.67574 * 0.47733 * 13 12 11 23 23 C 1.36362 * 119.83075 * 359.75484 * 22 13 12 24 24 C 1.40238 * 119.75625 * 0.27588 * 6 5 4 25 25 O 1.35757 * 120.14034 * 179.72397 * 24 6 5 26 26 C 1.42902 * 116.99529 * 90.00017 * 25 24 6 27 27 C 1.38801 * 119.71452 * 359.44867 * 24 6 5 28 28 O 1.36106 * 120.01319 * 180.26751 * 27 24 6 29 29 C 1.42898 * 117.00333 * 270.27881 * 28 27 24 30 30 H 1.08998 * 109.47256 * 60.00129 * 1 2 3 31 31 H 1.09007 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46873 * 299.99822 * 1 2 3 33 33 H 1.07995 * 119.86046 * 359.95866 * 4 3 2 34 34 H 1.08003 * 119.98737 * 179.97438 * 5 4 3 35 35 H 0.96993 * 119.99890 * 5.21545 * 9 7 6 36 36 H 1.07990 * 119.92230 * 0.02562 * 11 10 9 37 37 H 1.08004 * 120.08349 * 179.72586 * 12 11 10 38 38 H 0.97004 * 119.99953 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08179 * 179.73406 * 22 13 12 40 40 H 1.07995 * 119.91933 * 179.97438 * 23 22 13 41 41 H 1.09003 * 109.46961 * 60.00557 * 26 25 24 42 42 H 1.09009 * 109.46684 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47587 * 299.99715 * 26 25 24 44 44 H 1.09000 * 109.46699 * 60.00797 * 29 28 27 45 45 H 1.09002 * 109.47010 * 180.02562 * 29 28 27 46 46 H 1.08990 * 109.47465 * 300.00425 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2856 2.3749 -0.0005 5 6 1.9015 3.6052 0.0000 6 6 3.2982 3.6892 0.0016 7 6 3.9594 5.0050 0.0027 8 8 5.1736 5.0754 0.0046 9 7 3.2191 6.1313 0.0017 10 6 3.8398 7.3717 -0.1067 11 6 5.0024 7.5020 -0.8669 12 6 5.6194 8.7133 -0.9730 13 6 5.0745 9.8370 -0.3210 14 6 5.7047 11.0951 -0.4302 15 1 5.5654 11.8377 0.3415 16 6 6.5097 11.3804 -1.5383 17 7 6.4164 10.6501 -2.6203 18 14 7.7178 12.8037 -1.4735 19 1 9.0549 12.3000 -1.0691 20 1 7.8113 13.4351 -2.8144 21 1 7.2474 13.8075 -0.4854 22 6 3.9003 9.6976 0.4449 23 6 3.2969 8.4789 0.5458 24 6 4.0660 2.5157 -0.0032 25 8 5.4216 2.5881 -0.0073 26 6 6.0734 2.6201 1.2641 27 6 3.4340 1.2799 0.0021 28 8 4.1732 0.1371 0.0030 29 6 4.5270 -0.4078 -1.2697 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2074 2.3134 -0.0016 34 1 1.3067 4.5067 -0.0009 35 1 2.2535 6.0771 0.0766 36 1 5.4169 6.6405 -1.3691 37 1 6.5218 8.8118 -1.5582 38 1 6.9748 10.8477 -3.3885 39 1 3.4793 10.5537 0.9510 40 1 2.3970 8.3703 1.1328 41 1 5.8301 1.7145 1.8199 42 1 7.1521 2.6775 1.1180 43 1 5.7353 3.4920 1.8239 44 1 5.1159 0.3215 -1.8261 45 1 5.1134 -1.3153 -1.1261 46 1 3.6214 -0.6453 -1.8277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008125665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:44 Heat of formation + Delta-G solvation = -102.462496 kcal Electronic energy + Delta-G solvation = -31347.754578 eV Core-core repulsion = 26975.424183 eV Total energy + Delta-G solvation = -4372.330395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12702 -40.98499 -39.90127 -39.06536 -38.47057 -37.38512 -36.16130 -34.72198 -31.88483 -31.37787 -31.20698 -30.51393 -28.55136 -28.17774 -27.37278 -26.78975 -24.68773 -23.40974 -23.21511 -22.57539 -21.21106 -19.91675 -19.25401 -18.92426 -18.55661 -18.13138 -17.39282 -17.28989 -17.10385 -17.02574 -16.44829 -16.07862 -15.93593 -15.75355 -15.70093 -15.54822 -15.48219 -14.81261 -14.49044 -14.21416 -14.02324 -13.85289 -13.76328 -13.62174 -13.38174 -13.21169 -12.88687 -12.81007 -12.79882 -12.65255 -12.39798 -12.21503 -11.97309 -11.70208 -11.50506 -11.44941 -11.19729 -10.95317 -10.72760 -10.52560 -9.86396 -9.44744 -9.41273 -8.83905 -8.59166 -6.26307 -0.39289 -0.14500 0.86141 1.15410 1.37956 1.46758 1.52296 1.75291 2.00291 2.20409 2.20928 2.46476 2.68409 2.76451 2.99033 3.68263 3.71194 3.79302 3.84362 4.10173 4.10375 4.33237 4.36283 4.40908 4.42413 4.43972 4.44518 4.45386 4.47605 4.70242 4.73582 4.77215 4.82693 4.91509 4.98676 5.02362 5.11381 5.20177 5.20371 5.30584 5.43857 5.68550 5.87026 5.98073 6.08880 6.11133 6.25353 6.34341 6.56277 6.68359 6.73099 6.93035 7.01110 7.40081 8.33384 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.002209 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.896087 B =12670.448361 C =13520.944225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.317 6.317 3 C 0.152 3.848 4 C -0.196 4.196 5 C -0.024 4.024 6 C -0.199 4.199 7 C 0.542 3.458 8 O -0.553 6.553 9 N -0.637 5.637 10 C 0.011 3.989 11 C -0.098 4.098 12 C -0.180 4.180 13 C 0.073 3.927 14 C -0.493 4.493 15 H 0.081 0.919 16 C 0.030 3.970 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.222 4.222 23 C -0.097 4.097 24 C 0.156 3.844 25 O -0.337 6.337 26 C 0.058 3.942 27 C 0.013 3.987 28 O -0.333 6.333 29 C 0.034 3.966 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.186 0.814 34 H 0.170 0.830 35 H 0.415 0.585 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.287 0.713 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.033 0.967 44 H 0.037 0.963 45 H 0.115 0.885 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 -20.685 4.197 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.229 6.229 3 C 0.104 3.896 4 C -0.214 4.214 5 C -0.043 4.043 6 C -0.203 4.203 7 C 0.332 3.668 8 O -0.432 6.432 9 N -0.283 5.283 10 C -0.083 4.083 11 C -0.119 4.119 12 C -0.200 4.200 13 C 0.070 3.930 14 C -0.522 4.522 15 H 0.099 0.901 16 C -0.184 4.184 17 N -0.453 5.453 18 Si 0.804 3.196 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.176 1.176 22 C -0.242 4.242 23 C -0.117 4.117 24 C 0.110 3.890 25 O -0.254 6.254 26 C -0.036 4.036 27 C -0.032 4.032 28 O -0.250 6.250 29 C -0.059 4.059 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.203 0.797 34 H 0.188 0.812 35 H 0.253 0.747 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.133 0.867 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.068 -20.991 3.942 25.038 hybrid contribution 0.383 0.817 -0.397 0.986 sum -12.685 -20.173 3.545 24.093 Atomic orbital electron populations 1.23581 0.75318 1.06274 1.03273 1.86135 1.24294 1.25355 1.87128 1.19512 0.90418 0.86400 0.93304 1.21494 1.02355 0.89702 1.07820 1.21405 0.91009 0.99801 0.92084 1.20159 0.95285 0.91524 1.13373 1.18381 0.86900 0.84462 0.77103 1.90802 1.15127 1.87423 1.49888 1.42701 1.10355 1.03290 1.71951 1.17179 0.99461 0.85404 1.06218 1.20434 0.96710 0.96263 0.98455 1.20852 1.01308 0.92094 1.05763 1.18005 0.90911 0.93209 0.90828 1.19820 1.26509 0.99868 1.05994 0.90057 1.26831 0.97580 1.00412 0.93604 1.69923 1.33833 1.38400 1.03097 0.85173 0.77929 0.77551 0.78947 1.19217 1.19229 1.17631 1.20823 0.97771 0.97363 1.08280 1.20387 1.00691 0.91699 0.98913 1.19004 0.84025 0.90413 0.95572 1.85859 1.14683 1.93807 1.31031 1.22887 0.97903 0.99996 0.82794 1.18247 0.87948 0.85727 1.11304 1.86042 1.70828 1.37292 1.30851 1.23150 1.00157 0.98969 0.83664 0.90619 0.86075 0.90589 0.79719 0.81242 0.74655 0.89381 0.88776 0.90266 0.86983 0.84482 0.92267 0.88029 0.94826 0.94452 0.86662 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -5.43 10.26 -77.19 -0.79 -6.22 16 3 C 0.15 3.08 6.70 22.66 0.15 3.24 16 4 C -0.20 -2.91 9.01 22.32 0.20 -2.71 16 5 C -0.02 -0.46 9.52 22.52 0.21 -0.24 16 6 C -0.20 -5.86 5.89 -20.01 -0.12 -5.98 16 7 C 0.54 20.37 7.48 86.62 0.65 21.02 16 8 O -0.55 -25.92 11.62 16.86 0.20 -25.73 16 9 N -0.64 -22.06 5.25 -306.18 -1.61 -23.67 16 10 C 0.01 0.48 6.29 38.60 0.24 0.72 16 11 C -0.10 -5.19 8.57 22.14 0.19 -5.00 16 12 C -0.18 -10.30 8.63 22.48 0.19 -10.10 16 13 C 0.07 4.06 5.57 -21.27 -0.12 3.94 16 14 C -0.49 -27.07 9.03 23.38 0.21 -26.85 16 15 H 0.08 4.24 7.90 -2.91 -0.02 4.21 16 16 C 0.03 1.58 5.14 85.24 0.44 2.02 16 17 N -0.83 -45.23 10.97 21.82 0.24 -45.00 16 18 Si 0.98 39.41 29.59 68.60 2.03 41.44 16 19 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 22 C -0.22 -10.70 9.74 22.48 0.22 -10.48 16 23 C -0.10 -4.06 9.89 22.14 0.22 -3.84 16 24 C 0.16 4.89 5.74 22.89 0.13 5.02 16 25 O -0.34 -12.01 8.61 -63.42 -0.55 -12.56 16 26 C 0.06 1.75 10.48 113.37 1.19 2.94 16 27 C 0.01 0.34 5.74 22.59 0.13 0.47 16 28 O -0.33 -8.95 9.97 -70.43 -0.70 -9.65 16 29 C 0.03 0.71 11.13 113.37 1.26 1.97 16 30 H 0.08 0.28 7.65 -2.39 -0.02 0.26 16 31 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.08 0.28 7.65 -2.39 -0.02 0.27 16 33 H 0.19 1.12 6.27 -2.91 -0.02 1.10 16 34 H 0.17 2.01 6.40 -2.91 -0.02 1.99 16 35 H 0.41 10.12 6.84 -92.71 -0.63 9.48 16 36 H 0.09 4.82 6.38 -2.92 -0.02 4.81 16 37 H 0.09 5.72 6.19 -2.91 -0.02 5.71 16 38 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 39 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 43 H 0.03 1.11 7.49 -2.39 -0.02 1.09 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -78.26 388.00 5.74 -72.52 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.40 Total: 31.56 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 6.52 Total: -22.69 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -1.37 Total: -68.67 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.84 Total: -54.16 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -78.26 5.74 -72.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.943 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds