Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47121 * 2 1 4 4 O 1.42898 * 109.47160 * 119.99895 * 2 1 3 5 5 C 1.42899 * 113.99939 * 89.99743 * 4 2 1 6 6 C 1.53000 * 109.47108 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.47215 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.46812 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99583 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47076 * 184.65319 * 9 8 7 11 11 C 1.35082 * 126.08157 * 256.70902 * 10 9 8 12 12 N 1.35036 * 107.98287 * 180.24726 * 11 10 9 13 13 C 1.46504 * 125.92781 * 179.74522 * 12 11 10 14 14 C 1.50695 * 109.46948 * 124.99754 * 13 12 11 15 15 H 1.08004 * 120.00403 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99701 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47272 * 89.99676 * 18 16 14 20 20 H 1.48498 * 109.47056 * 209.99921 * 18 16 14 21 21 H 1.48501 * 109.46857 * 329.99786 * 18 16 14 22 22 N 1.40071 * 108.13840 * 359.76086 * 12 11 10 23 23 C 1.31615 * 108.10927 * 0.02562 * 22 12 11 24 24 C 1.48419 * 126.03966 * 179.97438 * 23 22 12 25 25 C 1.39328 * 120.12195 * 222.94718 * 24 23 22 26 26 C 1.38018 * 119.88052 * 179.97438 * 25 24 23 27 27 C 1.38325 * 120.11942 * 359.97438 * 26 25 24 28 28 C 1.38316 * 120.23951 * 0.02562 * 27 26 25 29 29 C 1.38024 * 120.12202 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47011 * 300.00071 * 1 2 3 31 31 H 1.08998 * 109.47161 * 60.00222 * 1 2 3 32 32 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47011 * 239.99929 * 2 1 3 34 34 H 1.09001 * 109.46919 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47296 * 299.99533 * 3 2 1 36 36 H 1.08996 * 109.47236 * 60.00067 * 3 2 1 37 37 H 1.09006 * 109.47007 * 60.00181 * 5 4 2 38 38 H 1.08992 * 109.47151 * 300.00137 * 5 4 2 39 39 H 1.08999 * 109.47227 * 59.99761 * 6 5 4 40 40 H 1.09005 * 109.47233 * 300.00348 * 6 5 4 41 41 H 1.08999 * 109.47084 * 60.00209 * 7 6 5 42 42 H 1.09001 * 109.46768 * 299.99672 * 7 6 5 43 43 H 1.00899 * 111.00142 * 56.04606 * 8 7 6 44 44 H 1.08997 * 109.47134 * 64.65476 * 9 8 7 45 45 H 1.09004 * 109.46940 * 304.65057 * 9 8 7 46 46 H 1.08004 * 126.00448 * 359.97438 * 11 10 9 47 47 H 1.09001 * 109.46385 * 244.99648 * 13 12 11 48 48 H 1.09001 * 109.47295 * 4.99450 * 13 12 11 49 49 H 0.97002 * 119.99705 * 179.97438 * 17 16 14 50 50 H 1.08002 * 120.05679 * 359.95814 * 25 24 23 51 51 H 1.07995 * 119.94070 * 180.02562 * 26 25 24 52 52 H 1.08000 * 119.87886 * 179.74813 * 27 26 25 53 53 H 1.08005 * 119.93775 * 179.97438 * 28 27 26 54 54 H 1.07999 * 120.05845 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7078 -2.6926 2.2946 7 6 2.9158 -4.1964 2.1037 8 7 3.4028 -4.7864 3.3578 9 6 3.6149 -6.2327 3.2116 10 6 4.0031 -6.8206 4.5437 11 6 5.2481 -7.1858 4.9197 12 7 5.1782 -7.6706 6.1781 13 6 6.3023 -8.1830 6.9656 14 6 6.3736 -7.4457 8.2780 15 1 5.6538 -6.6725 8.5028 16 6 7.3577 -7.7583 9.1917 17 7 8.2338 -8.7002 8.9181 18 14 7.4457 -6.8449 10.8188 19 1 6.6259 -7.5574 11.8315 20 1 8.8568 -6.7853 11.2773 21 1 6.9242 -5.4658 10.6411 22 7 3.8443 -7.5989 6.5996 23 6 3.1326 -7.0849 5.6190 24 6 1.6701 -6.8330 5.6406 25 6 0.8894 -7.1506 4.5311 26 6 -0.4702 -6.9148 4.5568 27 6 -1.0582 -6.3646 5.6816 28 6 -0.2879 -6.0474 6.7857 29 6 1.0727 -6.2791 6.7708 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9319 -2.2467 0.1986 38 1 1.2538 -2.5433 0.7125 39 1 1.9757 -2.5241 3.0843 40 1 3.6541 -2.2275 2.5712 41 1 3.6482 -4.3646 1.3141 42 1 1.9698 -4.6618 1.8269 43 1 2.7716 -4.5883 4.1196 44 1 4.4114 -6.4119 2.4894 45 1 2.6950 -6.7013 2.8618 46 1 6.1415 -7.1080 4.3179 47 1 6.1588 -9.2470 7.1538 48 1 7.2305 -8.0335 6.4140 49 1 8.9264 -8.9198 9.5608 50 1 1.3475 -7.5804 3.6525 51 1 -1.0763 -7.1610 3.6976 52 1 -2.1218 -6.1779 5.6959 53 1 -0.7520 -5.6177 7.6612 54 1 1.6731 -6.0314 7.6337 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008235691.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = 17.702574 kcal Electronic energy + Delta-G solvation = -30781.412918 eV Core-core repulsion = 26718.252212 eV Total energy + Delta-G solvation = -4063.160706 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.09868 -39.74859 -39.43152 -37.53986 -35.76914 -34.48203 -33.82845 -32.67270 -31.79233 -31.62449 -30.61850 -28.85766 -28.10314 -26.49311 -25.34903 -24.35044 -23.46566 -22.98344 -22.52333 -21.99823 -21.32669 -20.56217 -18.67925 -17.97892 -17.80399 -17.34262 -17.04653 -16.50719 -16.39939 -16.23911 -15.98555 -15.70716 -15.54222 -15.14484 -15.06187 -14.80696 -14.44601 -14.30074 -14.21445 -13.94517 -13.85456 -13.70061 -13.51493 -13.38918 -13.18060 -13.15548 -12.99492 -12.84125 -12.71374 -12.41816 -12.35557 -12.28866 -12.10096 -12.05751 -11.96142 -11.80751 -11.73745 -11.54081 -11.24679 -10.79693 -10.47285 -10.46594 -9.83702 -9.62810 -9.30856 -8.98037 -8.37289 -6.51262 0.22028 0.51357 1.20431 1.34072 1.35291 1.46579 1.83012 1.91431 2.31481 2.68069 2.94051 2.95535 3.54158 3.64771 3.88599 3.97270 4.04240 4.04832 4.13588 4.15323 4.24950 4.26531 4.30636 4.35345 4.36581 4.40951 4.52852 4.60232 4.61467 4.63570 4.69529 4.76055 4.77549 4.80492 4.88323 4.89672 4.93749 4.96278 5.03741 5.10980 5.19883 5.21098 5.26657 5.28221 5.31754 5.35237 5.50090 5.52507 5.61763 5.68893 5.78550 5.87848 6.10343 6.19254 6.27547 6.38357 6.46651 6.60427 6.99539 7.18622 8.70432 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.002153 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.245725 B =13003.248585 C =14607.499853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 C -0.150 4.150 4 O -0.409 6.409 5 C 0.068 3.932 6 C -0.111 4.111 7 C 0.069 3.931 8 N -0.697 5.697 9 C 0.152 3.848 10 C -0.239 4.239 11 C 0.056 3.944 12 N -0.350 5.350 13 C 0.272 3.728 14 C -0.547 4.547 15 H 0.048 0.952 16 C 0.019 3.981 17 N -0.919 5.919 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.269 1.269 21 H -0.274 1.274 22 N -0.321 5.321 23 C 0.084 3.916 24 C -0.018 4.018 25 C -0.107 4.107 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.121 4.121 29 C -0.119 4.119 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.336 0.664 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.192 0.808 47 H 0.019 0.981 48 H 0.055 0.945 49 H 0.273 0.727 50 H 0.133 0.867 51 H 0.156 0.844 52 H 0.154 0.846 53 H 0.141 0.859 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.790 12.672 -21.258 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 C -0.207 4.207 4 O -0.329 6.329 5 C -0.009 4.009 6 C -0.149 4.149 7 C -0.060 4.060 8 N -0.328 5.328 9 C 0.023 3.977 10 C -0.251 4.251 11 C -0.092 4.092 12 N -0.130 5.130 13 C 0.153 3.847 14 C -0.585 4.585 15 H 0.067 0.933 16 C -0.182 4.182 17 N -0.558 5.558 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.193 1.193 21 H -0.199 1.199 22 N -0.144 5.144 23 C -0.080 4.080 24 C -0.020 4.020 25 C -0.126 4.126 26 C -0.132 4.132 27 C -0.132 4.132 28 C -0.139 4.139 29 C -0.139 4.139 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.153 0.847 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.208 0.792 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.151 0.849 51 H 0.174 0.826 52 H 0.172 0.828 53 H 0.159 0.841 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.753 12.274 -19.863 29.332 hybrid contribution -0.008 -0.073 0.528 0.533 sum -17.762 12.201 -19.335 28.951 Atomic orbital electron populations 1.22282 0.95329 1.02450 1.02933 1.22287 0.94273 0.94124 0.87857 1.21889 1.01518 0.94276 1.03030 1.87910 1.86917 1.20997 1.37110 1.22462 0.99967 0.80991 0.97444 1.21376 1.01533 0.94894 0.97087 1.21806 0.99077 0.92950 0.92166 1.60501 1.53400 1.12269 1.06622 1.20106 1.00363 0.86178 0.91013 1.20029 0.91336 1.14371 0.99354 1.22823 1.00500 0.98801 0.87125 1.49084 1.06364 1.46176 1.11380 1.19276 0.80705 0.94014 0.90696 1.21351 1.14342 1.20777 1.02015 0.93349 1.25738 0.94451 0.95890 1.02117 1.69991 1.17034 1.31085 1.37642 0.85366 0.77932 0.78632 0.78609 1.19821 1.19337 1.19875 1.77560 0.88994 1.24296 1.23580 1.21075 0.94211 1.00335 0.92342 1.17964 0.87734 1.00556 0.95786 1.21313 0.94386 0.99779 0.97153 1.21409 0.93722 0.98583 0.99493 1.21574 1.01180 0.97822 0.92650 1.21321 0.92430 1.00098 1.00030 1.21267 0.96151 0.99529 0.96939 0.92730 0.89991 0.92515 0.91168 0.92546 0.89318 0.92657 0.92238 0.92346 0.92422 0.92026 0.89997 0.93917 0.84690 0.89509 0.93128 0.79156 0.96346 0.92673 0.91784 0.84911 0.82616 0.82790 0.84142 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.53 71.98 0.69 -1.28 16 2 C 0.07 0.99 3.34 30.59 0.10 1.09 16 3 C -0.15 -1.81 9.56 71.98 0.69 -1.12 16 4 O -0.41 -8.06 9.99 -148.98 -1.49 -9.54 16 5 C 0.07 1.09 5.75 71.98 0.41 1.50 16 6 C -0.11 -2.13 5.84 30.60 0.18 -1.95 16 7 C 0.07 1.25 5.68 86.31 0.49 1.74 16 8 N -0.70 -17.28 6.52 -517.91 -3.38 -20.65 16 9 C 0.15 3.81 5.72 85.56 0.49 4.30 16 10 C -0.24 -8.26 5.55 -19.95 -0.11 -8.37 16 11 C 0.06 2.16 11.32 83.47 0.95 3.11 16 12 N -0.35 -16.80 3.67 -351.91 -1.29 -18.10 16 13 C 0.27 14.59 6.26 85.63 0.54 15.12 16 14 C -0.55 -31.96 9.23 25.60 0.24 -31.72 16 15 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 16 C 0.02 1.05 5.46 84.65 0.46 1.52 16 17 N -0.92 -53.22 13.29 21.45 0.28 -52.94 16 18 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 22 N -0.32 -15.57 12.44 -48.15 -0.60 -16.17 16 23 C 0.08 3.32 6.67 42.53 0.28 3.60 16 24 C -0.02 -0.60 5.74 -20.04 -0.12 -0.71 16 25 C -0.11 -2.60 8.86 22.48 0.20 -2.41 16 26 C -0.11 -2.10 10.03 22.24 0.22 -1.88 16 27 C -0.11 -2.08 10.04 22.31 0.22 -1.86 16 28 C -0.12 -2.81 10.03 22.24 0.22 -2.59 16 29 C -0.12 -3.76 9.78 22.48 0.22 -3.54 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.64 7.87 -2.39 -0.02 0.62 16 33 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.81 8.09 -2.38 -0.02 0.79 16 38 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.34 9.24 8.66 -89.69 -0.78 8.46 16 44 H 0.09 1.92 8.13 -2.39 -0.02 1.91 16 45 H 0.05 1.10 5.64 -2.38 -0.01 1.08 16 46 H 0.19 6.07 8.06 -2.91 -0.02 6.04 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 2.89 8.07 -2.39 -0.02 2.87 16 49 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.13 2.90 6.20 -2.91 -0.02 2.88 16 51 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 52 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 53 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 54 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -70.81 447.31 2.02 -68.78 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.09 Total: 26.98 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 6.38 Total: -25.45 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.98 Total: -107.85 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.49 Total: -9.54 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.81 2.02 -68.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008235691.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.483 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds