Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46500 * 120.00114 * 2 1 4 4 C 1.50701 * 109.46858 * 269.99520 * 3 2 1 5 5 H 1.07994 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99723 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00151 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99556 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00605 * 8 6 4 11 11 H 1.48507 * 109.46816 * 239.99928 * 8 6 4 12 12 C 1.38791 * 119.99980 * 179.97438 * 2 1 3 13 13 C 1.39413 * 119.87778 * 0.02562 * 12 2 1 14 14 C 1.36447 * 120.12017 * 179.97438 * 13 12 2 15 15 C 1.40413 * 119.87430 * 0.25283 * 14 13 12 16 16 C 1.46145 * 120.11671 * 179.74459 * 15 14 13 17 17 C 1.38264 * 120.00127 * 314.28975 * 16 15 14 18 18 C 1.47591 * 121.48005 * 349.50463 * 17 16 15 19 19 O 1.21649 * 120.91303 * 359.97438 * 18 17 16 20 20 N 1.34905 * 118.17266 * 179.68906 * 18 17 16 21 21 C 1.46494 * 119.23174 * 180.30601 * 20 18 17 22 22 C 1.34024 * 121.53539 * 0.62703 * 20 18 17 23 23 O 1.21529 * 118.23156 * 179.66289 * 22 20 18 24 24 N 1.34036 * 123.54365 * 359.63695 * 22 20 18 25 25 C 1.46495 * 119.23166 * 180.02562 * 24 22 20 26 26 C 1.34900 * 121.53153 * 0.02562 * 24 22 20 27 27 O 1.21650 * 120.91173 * 180.02562 * 26 24 22 28 28 C 1.40427 * 119.76631 * 359.49357 * 15 14 13 29 29 C 1.36444 * 119.87227 * 0.50834 * 28 15 14 30 30 H 1.09001 * 109.47266 * 269.99974 * 1 2 3 31 31 H 1.09004 * 109.47140 * 30.00304 * 1 2 3 32 32 H 1.09003 * 109.47579 * 150.00072 * 1 2 3 33 33 H 1.08998 * 109.47400 * 29.99500 * 3 2 1 34 34 H 1.09008 * 109.47278 * 150.00146 * 3 2 1 35 35 H 0.96994 * 120.00053 * 179.97438 * 7 6 4 36 36 H 1.07992 * 119.94031 * 359.95517 * 13 12 2 37 37 H 1.07996 * 120.05884 * 179.97438 * 14 13 12 38 38 H 1.08004 * 119.99872 * 134.29642 * 16 15 14 39 39 H 1.09005 * 109.47163 * 180.30526 * 21 20 18 40 40 H 1.08999 * 109.47407 * 300.31005 * 21 20 18 41 41 H 1.09001 * 109.47229 * 60.30939 * 21 20 18 42 42 H 1.09000 * 109.47244 * 270.01741 * 25 24 22 43 43 H 1.08995 * 109.47568 * 30.02432 * 25 24 22 44 44 H 1.09008 * 109.46815 * 150.02387 * 25 24 22 45 45 H 1.07994 * 120.06277 * 180.22214 * 28 15 14 46 46 H 1.07996 * 119.93770 * 179.72212 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.8590 2.4173 -4.3673 10 1 2.7989 4.7379 -3.6671 11 1 4.8994 3.5260 -3.6676 12 6 2.1588 -1.2020 0.0005 13 6 1.4592 -2.4078 0.0005 14 6 2.1364 -3.5924 0.0005 15 6 3.5405 -3.5952 0.0059 16 6 4.2712 -4.8609 0.0116 17 6 3.8895 -5.8757 0.8695 18 6 2.9065 -5.6459 1.9461 19 8 2.4027 -4.5506 2.1090 20 7 2.5775 -6.6852 2.7408 21 6 1.5990 -6.4846 3.8125 22 6 3.1297 -7.8953 2.5768 23 8 2.7941 -8.7873 3.3308 24 7 4.0317 -8.1750 1.6256 25 6 4.5744 -9.5325 1.5313 26 6 4.4515 -7.2356 0.7533 27 8 5.2704 -7.5020 -0.1060 28 6 4.2402 -2.3777 0.0005 29 6 3.5530 -1.1990 0.0005 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5137 34 1 3.1499 1.1384 0.5138 35 1 4.0302 4.4439 -0.8504 36 1 0.3793 -2.4044 0.0008 37 1 1.5935 -4.5259 0.0010 38 1 5.1095 -5.0035 -0.6544 39 1 1.4573 -7.4196 4.3547 40 1 1.9623 -5.7186 4.4976 41 1 0.6492 -6.1665 3.3824 42 1 5.4673 -9.6108 2.1515 43 1 3.8277 -10.2471 1.8774 44 1 4.8319 -9.7495 0.4946 45 1 5.3202 -2.3744 0.0010 46 1 4.0900 -0.2620 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012422061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = -12.504336 kcal Electronic energy + Delta-G solvation = -31518.540401 eV Core-core repulsion = 27182.403636 eV Total energy + Delta-G solvation = -4336.136765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.50211 -39.77806 -39.50293 -38.84367 -36.25884 -35.57081 -35.35831 -33.48135 -32.71299 -30.86324 -29.91885 -28.20922 -28.01120 -27.03475 -25.93984 -24.62330 -23.39199 -23.08976 -21.77709 -21.64541 -20.03691 -19.51657 -17.66818 -17.52316 -17.29776 -16.79859 -16.57851 -15.90697 -15.52606 -15.44852 -15.43654 -15.16758 -14.71691 -14.51082 -14.39021 -14.11350 -13.93306 -13.47756 -13.33639 -13.16956 -13.03168 -12.91446 -12.70980 -12.59904 -12.31615 -12.28375 -11.63551 -11.50867 -11.41141 -11.21563 -11.10702 -10.97382 -10.83576 -10.51664 -10.24383 -10.18169 -10.10212 -9.96877 -9.87460 -9.66019 -8.81633 -8.63954 -8.46221 -6.63973 -6.17615 -4.31923 0.09157 1.69802 1.73841 1.95680 2.11462 2.26986 2.70521 3.17471 3.26324 3.30254 3.37362 3.72668 3.88040 4.27374 4.33670 4.51289 4.86413 4.87977 5.02815 5.05809 5.08807 5.13042 5.16631 5.19711 5.21884 5.27908 5.40488 5.46615 5.51295 5.57454 5.74660 5.80888 5.87846 6.03037 6.09382 6.19058 6.25215 6.36923 6.72483 6.82418 6.90008 6.99459 7.03038 7.10860 7.16011 7.31352 7.34722 7.66303 7.72358 7.94356 8.00027 8.18283 8.75984 9.35616 10.82427 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.019396 B = 0.002308 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.246743 B =12127.517943 C =13074.298390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.593 5.593 3 C 0.241 3.759 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.283 3.717 13 C -0.236 4.236 14 C 0.033 3.967 15 C -0.227 4.227 16 C 0.173 3.827 17 C -0.335 4.335 18 C 0.560 3.440 19 O -0.461 6.461 20 N -0.566 5.566 21 C 0.080 3.920 22 C 0.712 3.288 23 O -0.541 6.541 24 N -0.566 5.566 25 C 0.081 3.919 26 C 0.572 3.428 27 O -0.498 6.498 28 C -0.016 4.016 29 C -0.208 4.208 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -20.314 5.374 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.292 5.292 3 C 0.122 3.878 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.169 3.831 13 C -0.259 4.259 14 C 0.014 3.986 15 C -0.230 4.230 16 C 0.153 3.847 17 C -0.341 4.341 18 C 0.353 3.647 19 O -0.332 6.332 20 N -0.312 5.312 21 C -0.061 4.061 22 C 0.415 3.585 23 O -0.415 6.415 24 N -0.311 5.311 25 C -0.060 4.060 26 C 0.366 3.634 27 O -0.372 6.372 28 C -0.035 4.035 29 C -0.230 4.230 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.758 -19.854 5.462 20.666 hybrid contribution 0.192 0.387 -0.845 0.949 sum -1.566 -19.467 4.617 20.068 Atomic orbital electron populations 1.21647 0.80823 1.02556 1.00465 1.47258 1.05215 1.05248 1.71477 1.19481 0.92343 0.78418 0.97576 1.21527 1.36968 1.06708 0.92221 0.92036 1.24966 0.95220 0.96172 0.97612 1.69930 1.37965 1.14331 1.30829 0.86431 0.78149 0.78532 0.84321 1.19662 1.20876 1.20722 1.18287 0.91712 0.86023 0.87034 1.20219 0.99372 0.91119 1.15184 1.20398 0.92008 0.96725 0.89495 1.18342 0.93434 0.91407 1.19821 1.23261 0.89192 0.88457 0.83839 1.21631 1.11371 0.95375 1.05770 1.18473 0.81286 0.83653 0.81337 1.90978 1.50824 1.21879 1.69494 1.46018 1.41859 1.09309 1.33967 1.21937 0.90935 1.04334 0.88928 1.15432 0.78818 0.83195 0.81075 1.90946 1.62538 1.43787 1.44183 1.45874 1.40366 1.14392 1.30431 1.21912 1.00059 0.79629 1.04404 1.18474 0.80411 0.84575 0.79956 1.90835 1.31370 1.81561 1.33453 1.20682 0.98815 0.90713 0.93312 1.20558 0.92449 0.99121 1.10893 0.93750 0.90856 0.92099 0.94692 0.94116 0.92504 0.86337 0.87577 0.83472 0.88125 0.90280 0.90281 0.90897 0.88923 0.88929 0.86228 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 10.17 59.84 0.61 2.02 16 2 N -0.59 -11.68 2.97 -180.96 -0.54 -12.22 16 3 C 0.24 5.63 4.89 -5.19 -0.03 5.61 16 4 C -0.54 -13.73 9.39 -34.44 -0.32 -14.05 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 7 N -0.89 -24.43 13.29 55.43 0.74 -23.70 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.28 5.26 6.55 -83.83 -0.55 4.71 16 13 C -0.24 -3.83 9.13 -39.79 -0.36 -4.20 16 14 C 0.03 0.50 6.58 -39.41 -0.26 0.24 16 15 C -0.23 -3.27 4.73 -105.08 -0.50 -3.77 16 16 C 0.17 2.08 9.43 -36.40 -0.34 1.74 16 17 C -0.33 -4.13 5.90 -102.26 -0.60 -4.74 16 18 C 0.56 7.26 7.02 -12.39 -0.09 7.17 16 19 O -0.46 -6.92 12.33 5.23 0.06 -6.85 16 20 N -0.57 -6.55 2.94 -129.69 -0.38 -6.94 16 21 C 0.08 0.73 9.97 59.84 0.60 1.33 16 22 C 0.71 8.43 8.07 -88.25 -0.71 7.72 16 23 O -0.54 -7.03 14.69 5.34 0.08 -6.95 16 24 N -0.57 -6.28 2.94 -129.69 -0.38 -6.66 16 25 C 0.08 0.67 10.05 59.84 0.60 1.27 16 26 C 0.57 6.97 7.64 -12.39 -0.09 6.87 16 27 O -0.50 -6.77 16.16 5.23 0.08 -6.69 16 28 C -0.02 -0.24 9.75 -39.41 -0.38 -0.63 16 29 C -0.21 -3.82 9.13 -39.79 -0.36 -4.18 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.06 0.85 6.16 -51.93 -0.32 0.53 16 33 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.00 6.16 -51.92 -0.32 0.68 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.12 1.73 6.10 -52.49 -0.32 1.41 16 37 H 0.11 1.44 7.14 -52.49 -0.38 1.07 16 38 H 0.15 1.47 7.80 -52.48 -0.41 1.06 16 39 H 0.10 0.86 6.72 -51.93 -0.35 0.51 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.70 7.28 -51.93 -0.38 0.32 16 44 H 0.09 0.70 7.40 -51.92 -0.38 0.32 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.14 2.80 6.10 -52.49 -0.32 2.48 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -30.45 383.80 -8.14 -38.59 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.67 Total: 1.61 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -2.90 Total: 8.67 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.56 Total: -49.51 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.23 Total: -20.49 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.45 -8.14 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012422061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.088 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds