Wall clock time and date at job start Tue Mar 31 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46500 * 120.00114 * 2 1 4 4 C 1.50701 * 109.46858 * 269.99520 * 3 2 1 5 5 H 1.07994 * 120.00359 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99723 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00151 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99556 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47220 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00605 * 8 6 4 11 11 H 1.48507 * 109.46816 * 239.99928 * 8 6 4 12 12 C 1.38791 * 119.99980 * 179.97438 * 2 1 3 13 13 C 1.39413 * 119.87778 * 0.02562 * 12 2 1 14 14 C 1.36447 * 120.12017 * 179.97438 * 13 12 2 15 15 C 1.40413 * 119.87430 * 0.25283 * 14 13 12 16 16 C 1.46145 * 120.11671 * 179.74459 * 15 14 13 17 17 C 1.38264 * 120.00127 * 314.28975 * 16 15 14 18 18 C 1.47591 * 121.48005 * 349.50463 * 17 16 15 19 19 O 1.21649 * 120.91303 * 359.97438 * 18 17 16 20 20 N 1.34905 * 118.17266 * 179.68906 * 18 17 16 21 21 C 1.46494 * 119.23174 * 180.30601 * 20 18 17 22 22 C 1.34024 * 121.53539 * 0.62703 * 20 18 17 23 23 O 1.21529 * 118.23156 * 179.66289 * 22 20 18 24 24 N 1.34036 * 123.54365 * 359.63695 * 22 20 18 25 25 C 1.46495 * 119.23166 * 180.02562 * 24 22 20 26 26 C 1.34900 * 121.53153 * 0.02562 * 24 22 20 27 27 O 1.21650 * 120.91173 * 180.02562 * 26 24 22 28 28 C 1.40427 * 119.76631 * 359.49357 * 15 14 13 29 29 C 1.36444 * 119.87227 * 0.50834 * 28 15 14 30 30 H 1.09001 * 109.47266 * 269.99974 * 1 2 3 31 31 H 1.09004 * 109.47140 * 30.00304 * 1 2 3 32 32 H 1.09003 * 109.47579 * 150.00072 * 1 2 3 33 33 H 1.08998 * 109.47400 * 29.99500 * 3 2 1 34 34 H 1.09008 * 109.47278 * 150.00146 * 3 2 1 35 35 H 0.96994 * 120.00053 * 179.97438 * 7 6 4 36 36 H 1.07992 * 119.94031 * 359.95517 * 13 12 2 37 37 H 1.07996 * 120.05884 * 179.97438 * 14 13 12 38 38 H 1.08004 * 119.99872 * 134.29642 * 16 15 14 39 39 H 1.09005 * 109.47163 * 180.30526 * 21 20 18 40 40 H 1.08999 * 109.47407 * 300.31005 * 21 20 18 41 41 H 1.09001 * 109.47229 * 60.30939 * 21 20 18 42 42 H 1.09000 * 109.47244 * 270.01741 * 25 24 22 43 43 H 1.08995 * 109.47568 * 30.02432 * 25 24 22 44 44 H 1.09008 * 109.46815 * 150.02387 * 25 24 22 45 45 H 1.07994 * 120.06277 * 180.22214 * 28 15 14 46 46 H 1.07996 * 119.93770 * 179.72212 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.8590 2.4173 -4.3673 10 1 2.7989 4.7379 -3.6671 11 1 4.8994 3.5260 -3.6676 12 6 2.1588 -1.2020 0.0005 13 6 1.4592 -2.4078 0.0005 14 6 2.1364 -3.5924 0.0005 15 6 3.5405 -3.5952 0.0059 16 6 4.2712 -4.8609 0.0116 17 6 3.8895 -5.8757 0.8695 18 6 2.9065 -5.6459 1.9461 19 8 2.4027 -4.5506 2.1090 20 7 2.5775 -6.6852 2.7408 21 6 1.5990 -6.4846 3.8125 22 6 3.1297 -7.8953 2.5768 23 8 2.7941 -8.7873 3.3308 24 7 4.0317 -8.1750 1.6256 25 6 4.5744 -9.5325 1.5313 26 6 4.4515 -7.2356 0.7533 27 8 5.2704 -7.5020 -0.1060 28 6 4.2402 -2.3777 0.0005 29 6 3.5530 -1.1990 0.0005 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5137 34 1 3.1499 1.1384 0.5138 35 1 4.0302 4.4439 -0.8504 36 1 0.3793 -2.4044 0.0008 37 1 1.5935 -4.5259 0.0010 38 1 5.1095 -5.0035 -0.6544 39 1 1.4573 -7.4196 4.3547 40 1 1.9623 -5.7186 4.4976 41 1 0.6492 -6.1665 3.3824 42 1 5.4673 -9.6108 2.1515 43 1 3.8277 -10.2471 1.8774 44 1 4.8319 -9.7495 0.4946 45 1 5.3202 -2.3744 0.0010 46 1 4.0900 -0.2620 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012422061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:59 Heat of formation + Delta-G solvation = -28.950372 kcal Electronic energy + Delta-G solvation = -31519.253555 eV Core-core repulsion = 27182.403636 eV Total energy + Delta-G solvation = -4336.849919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.45471 -40.90455 -40.52660 -40.01533 -37.59467 -36.49345 -36.39091 -35.00024 -34.24167 -32.18025 -30.99399 -29.74052 -29.13794 -27.83272 -27.17222 -26.02834 -24.75884 -24.02118 -23.13243 -22.82147 -21.26232 -20.57365 -18.67451 -18.62522 -18.46946 -18.36851 -17.93072 -16.91115 -16.82629 -16.49366 -16.46366 -16.36564 -16.02249 -15.78511 -15.52278 -15.45465 -15.20434 -14.69063 -14.46170 -14.35479 -14.06150 -14.01841 -13.86370 -13.51409 -13.38838 -13.28578 -13.21036 -13.06024 -12.76856 -12.67453 -12.58042 -12.23423 -12.17499 -12.09958 -11.75102 -11.59576 -11.19967 -11.12485 -10.96798 -10.76505 -10.64566 -10.13902 -9.72125 -8.36138 -7.85196 -6.38335 -0.94204 0.62275 0.76055 0.87427 1.03307 1.13225 1.37704 1.40369 1.51601 1.77206 2.32686 2.40009 2.52608 2.73273 3.04933 3.06790 3.49218 3.85213 3.95597 4.06704 4.09752 4.29061 4.31051 4.36386 4.38512 4.44534 4.45017 4.47964 4.55147 4.64804 4.69216 4.77726 4.79676 4.81867 4.86380 4.94693 4.98279 5.16514 5.22846 5.28339 5.52802 5.58327 5.66784 5.69536 6.01444 6.03738 6.08887 6.14851 6.36217 6.39698 6.75522 6.76302 6.80773 7.33281 8.82552 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.019396 B = 0.002308 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.246743 B =12127.517943 C =13074.298390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.255 3.745 13 C -0.233 4.233 14 C 0.031 3.969 15 C -0.216 4.216 16 C 0.181 3.819 17 C -0.328 4.328 18 C 0.562 3.438 19 O -0.483 6.483 20 N -0.566 5.566 21 C 0.077 3.923 22 C 0.713 3.287 23 O -0.550 6.550 24 N -0.565 5.565 25 C 0.076 3.924 26 C 0.578 3.422 27 O -0.508 6.508 28 C -0.015 4.015 29 C -0.233 4.233 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.014 0.986 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.175 0.825 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.145 0.855 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -23.111 4.779 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.315 5.315 3 C 0.138 3.862 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.145 3.855 13 C -0.255 4.255 14 C 0.012 3.988 15 C -0.218 4.218 16 C 0.161 3.839 17 C -0.335 4.335 18 C 0.355 3.645 19 O -0.356 6.356 20 N -0.311 5.311 21 C -0.064 4.064 22 C 0.416 3.584 23 O -0.425 6.425 24 N -0.309 5.309 25 C -0.064 4.064 26 C 0.372 3.628 27 O -0.384 6.384 28 C -0.034 4.034 29 C -0.256 4.256 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.192 0.808 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.162 0.838 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.607 -22.725 4.880 23.298 hybrid contribution 0.206 0.966 -0.551 1.131 sum -1.401 -21.759 4.328 22.229 Atomic orbital electron populations 1.21752 0.78937 1.03125 1.01508 1.47047 1.06286 1.04251 1.73871 1.18945 0.91415 0.79916 0.95916 1.21733 1.36497 1.06560 0.93036 0.92932 1.25750 0.95087 0.96322 1.01343 1.70034 1.38882 1.14817 1.32748 0.85455 0.78026 0.78125 0.79760 1.19351 1.20302 1.20314 1.18505 0.91940 0.86358 0.88708 1.20378 1.00212 0.90479 1.14480 1.20627 0.92417 0.96914 0.88837 1.18538 0.93552 0.92008 1.17722 1.23377 0.89349 0.87004 0.84162 1.21731 1.10654 0.95658 1.05419 1.18566 0.81022 0.83523 0.81419 1.90983 1.51771 1.22743 1.70087 1.46075 1.41942 1.08942 1.34093 1.22096 0.90834 1.04872 0.88550 1.15472 0.78793 0.83050 0.81055 1.90948 1.62888 1.44055 1.44593 1.45951 1.39962 1.15219 1.29792 1.22136 1.00682 0.78257 1.05290 1.18330 0.80101 0.84500 0.79867 1.90842 1.31857 1.81747 1.33937 1.20897 1.00094 0.90044 0.92331 1.20479 0.92843 0.99062 1.13218 0.92441 0.91852 0.89883 0.96841 0.96361 0.92357 0.84773 0.85818 0.80805 0.87457 0.89898 0.89370 0.89680 0.88235 0.88152 0.83768 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.88 10.17 127.77 1.30 4.18 16 2 N -0.61 -25.03 2.97 -726.44 -2.15 -27.19 16 3 C 0.26 12.84 4.89 85.63 0.42 13.26 16 4 C -0.54 -28.71 9.39 25.60 0.24 -28.47 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.78 5.46 84.66 0.46 1.24 16 7 N -0.93 -52.33 13.29 21.45 0.28 -52.05 16 8 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.25 9.67 6.55 38.61 0.25 9.93 16 13 C -0.23 -7.33 9.13 22.13 0.20 -7.13 16 14 C 0.03 0.87 6.58 22.38 0.15 1.02 16 15 C -0.22 -5.76 4.73 -20.16 -0.10 -5.86 16 16 C 0.18 3.79 9.43 24.33 0.23 4.02 16 17 C -0.33 -7.14 5.90 -18.33 -0.11 -7.25 16 18 C 0.56 13.20 7.02 86.69 0.61 13.81 16 19 O -0.48 -13.54 12.33 -4.19 -0.05 -13.59 16 20 N -0.57 -11.77 2.94 -801.10 -2.36 -14.13 16 21 C 0.08 1.25 9.97 127.77 1.27 2.53 16 22 C 0.71 15.10 8.07 179.52 1.45 16.55 16 23 O -0.55 -12.97 14.69 -3.81 -0.06 -13.03 16 24 N -0.57 -10.96 2.94 -801.10 -2.36 -13.32 16 25 C 0.08 1.04 10.05 127.77 1.28 2.33 16 26 C 0.58 12.35 7.64 86.69 0.66 13.01 16 27 O -0.51 -12.23 16.16 -4.19 -0.07 -12.30 16 28 C -0.01 -0.44 9.75 22.38 0.22 -0.22 16 29 C -0.23 -8.88 9.13 22.13 0.20 -8.67 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.11 8.07 -2.38 -0.02 2.09 16 32 H 0.08 2.24 6.16 -2.39 -0.01 2.23 16 33 H 0.01 0.71 8.07 -2.39 -0.02 0.69 16 34 H 0.02 0.98 6.16 -2.38 -0.01 0.96 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.13 3.69 6.10 -2.91 -0.02 3.67 16 37 H 0.12 3.02 7.14 -2.91 -0.02 3.00 16 38 H 0.17 2.80 7.80 -2.91 -0.02 2.78 16 39 H 0.11 1.62 6.72 -2.38 -0.02 1.60 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.25 7.28 -2.39 -0.02 1.23 16 44 H 0.10 1.24 7.40 -2.38 -0.02 1.22 16 45 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 46 H 0.11 4.70 6.10 -2.91 -0.02 4.69 16 Total: -1.00 -66.33 383.80 5.04 -61.30 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.03 Total: 15.63 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 8.75 Total: 24.27 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -6.59 Total: -106.68 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.18 Total: -38.92 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -66.33 5.04 -61.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012422061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.345 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds