Wall clock time and date at job start Tue Mar 31 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47359 * 300.00302 * 3 2 1 6 6 H 1.48507 * 109.47245 * 60.00305 * 3 2 1 7 7 C 1.39905 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99943 * 175.55498 * 7 2 1 9 9 C 1.41152 * 119.99837 * 355.55717 * 7 2 1 10 10 C 1.40867 * 120.16536 * 214.78293 * 9 7 2 11 11 C 1.36376 * 119.83089 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16839 * 359.97438 * 11 10 9 13 13 N 1.39233 * 119.83401 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99904 * 35.29056 * 13 12 11 15 15 O 1.21284 * 120.00177 * 355.70938 * 14 13 12 16 16 C 1.50698 * 120.00049 * 175.70783 * 14 13 12 17 17 C 1.50707 * 109.47047 * 179.97438 * 16 14 13 18 18 C 1.38322 * 119.87546 * 90.00053 * 17 16 14 19 19 C 1.38013 * 120.12017 * 179.97438 * 18 17 16 20 20 C 1.39343 * 119.87794 * 0.02562 * 19 18 17 21 21 C 1.48386 * 120.12134 * 179.97438 * 20 19 18 22 22 C 1.39343 * 120.12128 * 180.02562 * 21 20 19 23 23 C 1.38013 * 119.87787 * 180.02562 * 22 21 20 24 24 C 1.38327 * 120.12374 * 359.97438 * 23 22 21 25 25 C 1.38324 * 120.24166 * 0.25554 * 24 23 22 26 26 C 1.38020 * 120.12108 * 359.48931 * 25 24 23 27 27 C 1.39338 * 119.75592 * 0.25098 * 20 19 18 28 28 C 1.38015 * 119.87703 * 359.49602 * 27 20 19 29 29 C 1.39478 * 120.32891 * 0.25788 * 12 11 10 30 30 C 1.36378 * 120.17428 * 359.48305 * 29 12 11 31 31 H 0.97001 * 119.99870 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.08272 * 359.97438 * 10 9 7 33 33 H 1.08000 * 119.91703 * 179.97438 * 11 10 9 34 34 H 0.96995 * 120.00163 * 215.29009 * 13 12 11 35 35 H 1.08996 * 109.47345 * 59.99895 * 16 14 13 36 36 H 1.08999 * 109.47504 * 299.99760 * 16 14 13 37 37 H 1.07997 * 119.94251 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.06367 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.05845 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.94193 * 180.02562 * 23 22 21 41 41 H 1.07993 * 119.87607 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.94121 * 179.74665 * 25 24 23 43 43 H 1.08001 * 120.06400 * 180.23679 * 26 25 24 44 44 H 1.08002 * 120.06168 * 179.74478 * 27 20 19 45 45 H 1.07996 * 119.94014 * 180.25123 * 28 27 20 46 46 H 1.08007 * 119.91029 * 179.74859 * 29 12 11 47 47 H 1.07996 * 120.08485 * 180.26083 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2126 7 6 2.0083 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0730 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5186 0.7946 11 6 1.1803 -4.6950 0.8808 12 6 -0.0707 -4.8238 0.2776 13 7 -0.7633 -6.0281 0.3696 14 6 -0.6808 -6.7689 1.4925 15 8 0.0571 -6.4265 2.3921 16 6 -1.5053 -8.0228 1.6303 17 6 -1.2304 -8.6603 2.9679 18 6 -1.9949 -8.3127 4.0671 19 6 -1.7478 -8.8938 5.2943 20 6 -0.7256 -9.8317 5.4250 21 6 -0.4549 -10.4594 6.7420 22 6 0.5676 -11.3970 6.8729 23 6 0.8147 -11.9781 8.1001 24 6 0.0498 -11.6309 9.1992 25 6 -0.9695 -10.7043 9.0740 26 6 -1.2219 -10.1131 7.8526 27 6 0.0451 -10.1738 4.3157 28 6 -0.2141 -9.5904 3.0921 29 6 -0.6287 -3.7541 -0.4222 30 6 0.0415 -2.5698 -0.5126 31 1 -0.4850 0.8401 0.0004 32 1 2.8337 -3.4204 1.2618 33 1 1.6079 -5.5289 1.4175 34 1 -1.3052 -6.3340 -0.3745 35 1 -1.2421 -8.7200 0.8350 36 1 -2.5635 -7.7716 1.5579 37 1 -2.7871 -7.5859 3.9646 38 1 -2.3450 -8.6214 6.1519 39 1 1.1651 -11.6691 6.0153 40 1 1.6072 -12.7046 8.2027 41 1 0.2464 -12.0884 10.1575 42 1 -1.5663 -10.4399 9.9343 43 1 -2.0156 -9.3869 7.7568 44 1 0.8413 -10.8972 4.4123 45 1 0.3800 -9.8578 2.2308 46 1 -1.5961 -3.8626 -0.8901 47 1 -0.3938 -1.7412 -1.0513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015028874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:55 Heat of formation + Delta-G solvation = 32.508759 kcal Electronic energy + Delta-G solvation = -28559.618985 eV Core-core repulsion = 24636.283397 eV Total energy + Delta-G solvation = -3923.335588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.25249 -39.59145 -38.42558 -37.17323 -34.44546 -33.67254 -32.89898 -31.66792 -30.78291 -30.64783 -29.57587 -28.89510 -27.11815 -24.82977 -23.70933 -23.13493 -21.65573 -21.62460 -20.99801 -20.51024 -19.56978 -17.81474 -17.35676 -16.84803 -16.35849 -16.14709 -15.83061 -15.44801 -15.12406 -14.84981 -14.45364 -14.16675 -13.99859 -13.92852 -13.79033 -13.45221 -13.27984 -13.21511 -13.00838 -12.68688 -12.28981 -12.19079 -12.00455 -11.75002 -11.64876 -11.54392 -11.36429 -11.18272 -11.12951 -10.94028 -10.78276 -10.72430 -10.02081 -9.78400 -9.47890 -9.42119 -9.21212 -9.10609 -8.97533 -8.85817 -8.07623 -7.54200 -6.85536 -6.61461 -4.33798 0.51262 1.14632 1.38780 1.74101 2.56026 3.02043 3.09044 3.10541 3.15742 3.32565 3.41624 3.75850 3.98356 4.04215 4.39349 4.49232 4.64020 4.69914 4.70924 4.77752 4.84351 4.97745 5.11445 5.16140 5.23225 5.27319 5.31702 5.42533 5.60499 5.64494 5.66443 5.73391 5.89084 5.98466 6.12357 6.13406 6.19366 6.24489 6.36004 6.45676 6.54223 6.59061 6.72181 6.76471 6.89906 6.93974 7.07717 7.21718 7.30562 7.64545 7.75596 7.88359 8.07281 8.27184 8.32456 8.63346 8.77098 8.93462 9.00966 10.29681 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.001705 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.650460 B =16418.339959 C =17324.413575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.098 3.902 10 C -0.205 4.205 11 C -0.086 4.086 12 C 0.005 3.995 13 N -0.654 5.654 14 C 0.498 3.502 15 O -0.521 6.521 16 C -0.104 4.104 17 C -0.054 4.054 18 C -0.102 4.102 19 C -0.107 4.107 20 C -0.055 4.055 21 C -0.037 4.037 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.107 4.107 28 C -0.103 4.103 29 C -0.122 4.122 30 C -0.141 4.141 31 H 0.277 0.723 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.395 0.605 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 -21.526 9.347 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.225 4.225 11 C -0.106 4.106 12 C -0.088 4.088 13 N -0.297 5.297 14 C 0.285 3.715 15 O -0.397 6.397 16 C -0.144 4.144 17 C -0.054 4.054 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.055 4.055 21 C -0.037 4.037 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.142 4.142 30 C -0.161 4.161 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.229 0.771 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.109 0.891 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.425 -21.117 10.009 23.991 hybrid contribution -0.010 0.758 -0.252 0.799 sum -5.435 -20.359 9.757 23.221 Atomic orbital electron populations 1.69772 1.07279 1.28567 1.38370 1.25880 0.94945 1.01171 0.92581 0.86152 0.80607 0.80862 0.78379 1.18586 1.20001 1.19995 1.19533 0.94762 0.90210 1.44647 0.90576 1.17738 0.92328 0.92034 0.88300 1.20812 1.01211 0.94982 1.05493 1.20401 0.92804 0.97872 0.99511 1.17272 0.94163 0.85890 1.11440 1.43015 1.48998 1.21395 1.16310 1.20419 0.83662 0.85117 0.82342 1.90721 1.38584 1.70577 1.39807 1.20714 1.01524 0.95877 0.96305 1.19374 0.95847 0.95868 0.94326 1.20922 0.99880 0.98985 0.92180 1.21127 0.97465 0.96401 0.97461 1.18720 0.96915 0.97708 0.92174 1.18846 0.95951 0.96370 0.92502 1.21264 0.97378 0.96609 0.97879 1.21094 0.99716 1.00014 0.92784 1.21202 0.96122 0.98263 0.98700 1.21098 0.98029 0.97077 0.97379 1.21276 0.99646 0.99900 0.92292 1.21115 0.99122 1.00154 0.92113 1.20899 0.96826 0.96743 0.97609 1.20320 0.98357 0.93177 1.02345 1.21189 0.97266 0.95546 1.02086 0.91226 0.88642 0.87506 0.77136 0.88207 0.88107 0.85893 0.85846 0.85691 0.85943 0.86139 0.85932 0.85671 0.85866 0.85941 0.89106 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.26 10.59 55.55 0.59 -20.67 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.46 -12.40 9.03 -37.85 -0.34 -12.74 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.09 -2.08 8.61 -39.79 -0.34 -2.42 16 12 C 0.00 0.10 6.31 -83.57 -0.53 -0.43 16 13 N -0.65 -11.11 5.30 -9.74 -0.05 -11.16 16 14 C 0.50 8.35 7.65 -10.99 -0.08 8.27 16 15 O -0.52 -11.18 13.45 5.55 0.07 -11.10 16 16 C -0.10 -1.18 5.83 -29.03 -0.17 -1.35 16 17 C -0.05 -0.68 4.38 -104.56 -0.46 -1.13 16 18 C -0.10 -1.26 9.68 -39.63 -0.38 -1.64 16 19 C -0.11 -1.25 9.43 -39.25 -0.37 -1.62 16 20 C -0.06 -0.65 5.88 -104.90 -0.62 -1.27 16 21 C -0.04 -0.40 5.88 -104.90 -0.62 -1.01 16 22 C -0.11 -1.09 9.43 -39.25 -0.37 -1.46 16 23 C -0.12 -0.99 10.03 -39.63 -0.40 -1.38 16 24 C -0.12 -1.00 10.04 -39.52 -0.40 -1.40 16 25 C -0.12 -0.99 10.03 -39.63 -0.40 -1.39 16 26 C -0.11 -1.10 9.43 -39.25 -0.37 -1.47 16 27 C -0.11 -1.23 9.43 -39.25 -0.37 -1.60 16 28 C -0.10 -1.23 9.68 -39.63 -0.38 -1.62 16 29 C -0.12 -2.77 9.90 -39.79 -0.39 -3.16 16 30 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 31 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 32 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16 33 H 0.11 2.56 6.22 -52.49 -0.33 2.24 16 34 H 0.40 5.09 8.82 -40.82 -0.36 4.73 16 35 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.19 6.21 -52.49 -0.33 0.86 16 39 H 0.13 1.01 6.21 -52.49 -0.33 0.69 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.13 1.04 6.21 -52.49 -0.33 0.72 16 44 H 0.12 1.14 6.21 -52.49 -0.33 0.81 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 47 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -32.60 394.91 -12.52 -45.11 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.66 Total: 12.45 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -8.40 Total: -34.71 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.54 Total: -31.84 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.60 -12.52 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015028874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.623 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds