Wall clock time and date at job start Tue Mar 31 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47359 * 300.00302 * 3 2 1 6 6 H 1.48507 * 109.47245 * 60.00305 * 3 2 1 7 7 C 1.39905 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99943 * 175.55498 * 7 2 1 9 9 C 1.41152 * 119.99837 * 355.55717 * 7 2 1 10 10 C 1.40867 * 120.16536 * 214.78293 * 9 7 2 11 11 C 1.36376 * 119.83089 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16839 * 359.97438 * 11 10 9 13 13 N 1.39233 * 119.83401 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99904 * 35.29056 * 13 12 11 15 15 O 1.21284 * 120.00177 * 355.70938 * 14 13 12 16 16 C 1.50698 * 120.00049 * 175.70783 * 14 13 12 17 17 C 1.50707 * 109.47047 * 179.97438 * 16 14 13 18 18 C 1.38322 * 119.87546 * 90.00053 * 17 16 14 19 19 C 1.38013 * 120.12017 * 179.97438 * 18 17 16 20 20 C 1.39343 * 119.87794 * 0.02562 * 19 18 17 21 21 C 1.48386 * 120.12134 * 179.97438 * 20 19 18 22 22 C 1.39343 * 120.12128 * 180.02562 * 21 20 19 23 23 C 1.38013 * 119.87787 * 180.02562 * 22 21 20 24 24 C 1.38327 * 120.12374 * 359.97438 * 23 22 21 25 25 C 1.38324 * 120.24166 * 0.25554 * 24 23 22 26 26 C 1.38020 * 120.12108 * 359.48931 * 25 24 23 27 27 C 1.39338 * 119.75592 * 0.25098 * 20 19 18 28 28 C 1.38015 * 119.87703 * 359.49602 * 27 20 19 29 29 C 1.39478 * 120.32891 * 0.25788 * 12 11 10 30 30 C 1.36378 * 120.17428 * 359.48305 * 29 12 11 31 31 H 0.97001 * 119.99870 * 359.97438 * 1 2 3 32 32 H 1.08006 * 120.08272 * 359.97438 * 10 9 7 33 33 H 1.08000 * 119.91703 * 179.97438 * 11 10 9 34 34 H 0.96995 * 120.00163 * 215.29009 * 13 12 11 35 35 H 1.08996 * 109.47345 * 59.99895 * 16 14 13 36 36 H 1.08999 * 109.47504 * 299.99760 * 16 14 13 37 37 H 1.07997 * 119.94251 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.06367 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.05845 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.94193 * 180.02562 * 23 22 21 41 41 H 1.07993 * 119.87607 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.94121 * 179.74665 * 25 24 23 43 43 H 1.08001 * 120.06400 * 180.23679 * 26 25 24 44 44 H 1.08002 * 120.06168 * 179.74478 * 27 20 19 45 45 H 1.07996 * 119.94014 * 180.25123 * 28 27 20 46 46 H 1.08007 * 119.91029 * 179.74859 * 29 12 11 47 47 H 1.07996 * 120.08485 * 180.26083 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2126 7 6 2.0083 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0730 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5186 0.7946 11 6 1.1803 -4.6950 0.8808 12 6 -0.0707 -4.8238 0.2776 13 7 -0.7633 -6.0281 0.3696 14 6 -0.6808 -6.7689 1.4925 15 8 0.0571 -6.4265 2.3921 16 6 -1.5053 -8.0228 1.6303 17 6 -1.2304 -8.6603 2.9679 18 6 -1.9949 -8.3127 4.0671 19 6 -1.7478 -8.8938 5.2943 20 6 -0.7256 -9.8317 5.4250 21 6 -0.4549 -10.4594 6.7420 22 6 0.5676 -11.3970 6.8729 23 6 0.8147 -11.9781 8.1001 24 6 0.0498 -11.6309 9.1992 25 6 -0.9695 -10.7043 9.0740 26 6 -1.2219 -10.1131 7.8526 27 6 0.0451 -10.1738 4.3157 28 6 -0.2141 -9.5904 3.0921 29 6 -0.6287 -3.7541 -0.4222 30 6 0.0415 -2.5698 -0.5126 31 1 -0.4850 0.8401 0.0004 32 1 2.8337 -3.4204 1.2618 33 1 1.6079 -5.5289 1.4175 34 1 -1.3052 -6.3340 -0.3745 35 1 -1.2421 -8.7200 0.8350 36 1 -2.5635 -7.7716 1.5579 37 1 -2.7871 -7.5859 3.9646 38 1 -2.3450 -8.6214 6.1519 39 1 1.1651 -11.6691 6.0153 40 1 1.6072 -12.7046 8.2027 41 1 0.2464 -12.0884 10.1575 42 1 -1.5663 -10.4399 9.9343 43 1 -2.0156 -9.3869 7.7568 44 1 0.8413 -10.8972 4.4123 45 1 0.3800 -9.8578 2.2308 46 1 -1.5961 -3.8626 -0.8901 47 1 -0.3938 -1.7412 -1.0513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015028874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:54 Heat of formation + Delta-G solvation = 17.538674 kcal Electronic energy + Delta-G solvation = -28560.268137 eV Core-core repulsion = 24636.283397 eV Total energy + Delta-G solvation = -3923.984739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.38834 -40.66486 -39.42933 -38.77745 -36.14216 -34.75013 -34.48296 -32.41809 -31.77426 -31.44821 -31.40642 -30.58396 -28.19412 -26.52749 -24.47154 -24.11933 -23.29397 -22.59404 -22.38449 -21.64224 -20.98460 -19.28071 -18.64231 -18.22264 -17.81771 -17.04575 -16.85617 -16.75506 -16.29425 -16.02133 -15.67284 -15.19716 -15.17895 -15.09599 -14.78779 -14.70228 -14.50743 -14.20796 -14.05146 -14.00446 -13.92553 -13.60292 -13.26410 -13.10937 -13.06809 -12.83733 -12.68098 -12.50127 -12.40326 -12.25737 -11.92355 -11.77505 -11.54140 -11.38991 -11.21535 -10.83823 -10.62789 -10.42147 -9.88048 -9.84877 -9.46763 -8.88815 -8.71865 -8.51046 -6.33625 -0.27421 0.48186 0.50781 0.79713 0.94918 1.13449 1.38539 1.43745 1.53578 1.84379 2.23279 2.36600 2.75757 2.81135 3.15413 3.59339 3.66864 3.75577 3.78009 3.99623 4.08865 4.11093 4.14183 4.31263 4.35327 4.40481 4.47590 4.53966 4.54775 4.55259 4.63773 4.82891 4.91505 4.94134 5.05881 5.10384 5.14688 5.15949 5.19172 5.34944 5.35760 5.39202 5.44837 5.59411 5.59435 5.64981 5.69486 5.80438 5.91438 6.03175 6.04180 6.09718 6.14638 6.39412 6.67522 6.77564 6.96342 7.00168 7.45736 8.41814 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.001705 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.650460 B =16418.339959 C =17324.413575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.222 4.222 11 C -0.099 4.099 12 C 0.024 3.976 13 N -0.646 5.646 14 C 0.498 3.502 15 O -0.571 6.571 16 C -0.089 4.089 17 C -0.074 4.074 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.063 4.063 21 C -0.062 4.062 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.113 4.113 29 C -0.120 4.120 30 C -0.158 4.158 31 H 0.285 0.715 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.420 0.580 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 -23.049 9.738 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.529 4.529 8 H 0.089 0.911 9 C 0.062 3.938 10 C -0.242 4.242 11 C -0.119 4.119 12 C -0.069 4.069 13 N -0.292 5.292 14 C 0.287 3.713 15 O -0.449 6.449 16 C -0.128 4.128 17 C -0.075 4.075 18 C -0.134 4.134 19 C -0.139 4.139 20 C -0.063 4.063 21 C -0.062 4.062 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.131 4.131 29 C -0.140 4.140 30 C -0.178 4.178 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.257 0.743 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.158 0.842 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.483 -22.689 10.371 25.776 hybrid contribution 0.261 1.009 -0.250 1.072 sum -6.223 -21.680 10.121 24.722 Atomic orbital electron populations 1.69828 1.08526 1.29871 1.38760 1.26729 0.95837 1.04267 0.91610 0.85066 0.79028 0.76161 0.78836 1.18500 1.18589 1.19453 1.19739 0.94774 0.91399 1.47035 0.91105 1.18048 0.93510 0.92676 0.89543 1.20923 1.01546 0.95675 1.06039 1.20511 0.93906 0.97336 1.00133 1.17328 0.93287 0.87584 1.08731 1.42961 1.48721 1.19734 1.17762 1.21409 0.82900 0.85934 0.81018 1.90711 1.40793 1.71986 1.41458 1.20723 1.01964 0.93278 0.96850 1.19592 0.96378 0.96507 0.94988 1.21169 1.00383 0.99289 0.92531 1.21378 0.97903 0.96601 0.97970 1.18992 0.96792 0.97576 0.92926 1.18990 0.97213 0.97515 0.92452 1.21489 0.97317 0.96597 0.98940 1.21425 1.00244 1.00158 0.92378 1.21586 0.95430 0.97693 0.99714 1.21416 0.98397 0.96888 0.97561 1.21487 0.99925 1.00394 0.92697 1.21396 0.99634 1.00613 0.92064 1.21177 0.96854 0.96743 0.98306 1.20589 0.99392 0.92098 1.01908 1.21176 0.97370 0.96537 1.02697 0.90485 0.88951 0.87595 0.74273 0.84661 0.85079 0.85069 0.84532 0.84851 0.83728 0.83658 0.83855 0.85084 0.84245 0.84567 0.85517 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.93 10.59 21.82 0.23 -44.69 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 39.79 29.56 68.60 2.03 41.82 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.50 -27.94 9.03 23.39 0.21 -27.73 16 8 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 9 C 0.06 3.63 5.55 -21.28 -0.12 3.51 16 10 C -0.22 -11.84 9.74 22.48 0.22 -11.62 16 11 C -0.10 -4.85 8.61 22.14 0.19 -4.65 16 12 C 0.02 1.05 6.31 38.57 0.24 1.30 16 13 N -0.65 -20.35 5.30 -303.11 -1.61 -21.96 16 14 C 0.50 15.71 7.65 87.66 0.67 16.38 16 15 O -0.57 -24.25 13.45 -3.04 -0.04 -24.29 16 16 C -0.09 -1.74 5.83 29.10 0.17 -1.57 16 17 C -0.07 -1.76 4.38 -19.82 -0.09 -1.84 16 18 C -0.12 -2.77 9.68 22.24 0.22 -2.56 16 19 C -0.12 -2.82 9.43 22.48 0.21 -2.61 16 20 C -0.06 -1.48 5.88 -20.04 -0.12 -1.60 16 21 C -0.06 -1.32 5.88 -20.04 -0.12 -1.44 16 22 C -0.13 -2.31 9.43 22.48 0.21 -2.10 16 23 C -0.12 -1.87 10.03 22.24 0.22 -1.64 16 24 C -0.13 -1.77 10.04 22.31 0.22 -1.54 16 25 C -0.12 -1.92 10.03 22.24 0.22 -1.70 16 26 C -0.13 -2.40 9.43 22.48 0.21 -2.19 16 27 C -0.12 -2.69 9.43 22.48 0.21 -2.47 16 28 C -0.11 -2.58 9.68 22.24 0.22 -2.37 16 29 C -0.12 -5.34 9.90 22.13 0.22 -5.12 16 30 C -0.16 -8.29 8.62 22.48 0.19 -8.09 16 31 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 32 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 33 H 0.11 5.18 6.22 -2.91 -0.02 5.16 16 34 H 0.42 9.22 8.82 -92.71 -0.82 8.40 16 35 H 0.14 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.13 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.14 2.62 6.21 -2.91 -0.02 2.60 16 39 H 0.13 2.06 6.21 -2.91 -0.02 2.05 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 43 H 0.13 2.15 6.21 -2.91 -0.02 2.13 16 44 H 0.14 2.49 6.21 -2.91 -0.02 2.48 16 45 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 46 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 47 H 0.12 6.48 6.13 -2.91 -0.02 6.47 16 Total: -1.00 -74.07 394.91 4.90 -69.17 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.20 Total: 39.74 kcal Atomic # 6 Polarization: -63.87 SS G_CDS: 4.09 Total: -59.78 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.38 Total: -66.66 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.04 Total: -24.29 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -74.07 4.90 -69.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015028874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.711 kcal (2) G-P(sol) polarization free energy of solvation -74.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds