Wall clock time and date at job start Tue Mar 31 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35894 * 117.00037 * 2 1 4 4 C 1.38803 * 120.02951 * 0.02562 * 3 2 1 5 5 C 1.38147 * 120.05697 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11242 * 359.74631 * 5 4 3 7 7 C 1.50694 * 119.97608 * 180.25076 * 6 5 4 8 8 C 1.50697 * 109.47686 * 265.25259 * 7 6 5 9 9 O 1.21294 * 119.99654 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.39995 * 119.99922 * 175.49434 * 10 8 7 12 12 C 1.38921 * 119.99911 * 214.84572 * 11 10 8 13 13 C 1.38001 * 119.99476 * 179.79289 * 12 11 10 14 14 C 1.38909 * 120.00502 * 0.46099 * 13 12 11 15 15 O 1.35772 * 119.99935 * 179.77060 * 14 13 12 16 16 C 1.34814 * 116.99785 * 185.36785 * 15 14 13 17 17 H 1.07998 * 120.00036 * 354.95927 * 16 15 14 18 18 C 1.38636 * 119.99974 * 174.96106 * 16 15 14 19 19 N 1.31571 * 119.99979 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47134 * 60.00046 * 20 18 16 22 22 H 1.48496 * 109.47046 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47092 * 300.00234 * 20 18 16 24 24 C 1.38904 * 119.99930 * 359.79387 * 14 13 12 25 25 C 1.38006 * 120.00313 * 359.97286 * 24 14 13 26 26 C 1.38758 * 120.05111 * 0.50447 * 6 5 4 27 27 O 1.35892 * 120.02720 * 179.76394 * 26 6 5 28 28 C 1.42903 * 117.00009 * 179.72078 * 27 26 6 29 29 C 1.38610 * 120.03043 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47664 * 300.00170 * 1 2 3 32 32 H 1.09010 * 109.47078 * 60.00410 * 1 2 3 33 33 H 1.08002 * 119.96566 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.94874 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47226 * 25.26150 * 7 6 5 36 36 H 1.09005 * 109.47206 * 145.25363 * 7 6 5 37 37 H 0.96999 * 119.99875 * 355.49254 * 10 8 7 38 38 H 1.08002 * 120.00100 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.99925 * 180.23327 * 13 12 11 40 40 H 0.97002 * 119.99990 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.99827 * 179.97438 * 24 14 13 42 42 H 1.08004 * 119.99838 * 179.97438 * 25 24 14 43 43 H 1.09000 * 109.47233 * 180.02562 * 28 27 26 44 44 H 1.09003 * 109.46565 * 60.00912 * 28 27 26 45 45 H 1.08991 * 109.47532 * 300.00851 * 28 27 26 46 46 H 1.07997 * 120.05382 * 0.03889 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9171 3.6065 0.0011 6 6 3.2971 3.6822 0.0064 7 6 3.9773 5.0268 0.0126 8 6 4.3143 5.4261 -1.4009 9 8 4.0296 4.6911 -2.3228 10 7 4.9320 6.5996 -1.6406 11 6 5.3297 6.9283 -2.9421 12 6 6.4970 7.6522 -3.1497 13 6 6.8912 7.9724 -4.4329 14 6 6.1158 7.5792 -5.5163 15 8 6.5013 7.8983 -6.7784 16 6 5.6502 7.5850 -7.7759 17 1 4.7488 7.0299 -7.5623 18 6 5.9322 7.9753 -9.0760 19 7 7.0307 8.6511 -9.3363 20 14 4.7533 7.5406 -10.4582 21 1 3.4243 8.1430 -10.1831 22 1 5.2802 8.0681 -11.7424 23 1 4.6187 6.0644 -10.5480 24 6 4.9458 6.8599 -5.3083 25 6 4.5540 6.5354 -4.0255 26 6 4.0567 2.5210 0.0006 27 8 5.4135 2.5961 0.0009 28 6 6.1316 1.3605 0.0010 29 6 3.4301 1.2841 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 0.2120 2.3187 0.0014 34 1 1.3277 4.5114 0.0011 35 1 3.3105 5.7694 0.4508 36 1 4.8927 4.9682 0.6016 37 1 5.1010 7.2166 -0.9115 38 1 7.0980 7.9611 -2.3072 39 1 7.8007 8.5320 -4.5946 40 1 7.2278 8.9245 -10.2459 41 1 4.3428 6.5546 -6.1506 42 1 3.6441 5.9765 -3.8638 43 1 7.2027 1.5628 0.0018 44 1 5.8702 0.7884 -0.8892 45 1 5.8696 0.7880 0.8907 46 1 4.0196 0.3792 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019600220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:35 Heat of formation + Delta-G solvation = -75.313822 kcal Electronic energy + Delta-G solvation = -30466.204606 eV Core-core repulsion = 26095.051466 eV Total energy + Delta-G solvation = -4371.153140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88843 -39.90967 -39.17131 -38.54801 -36.92461 -36.28355 -33.84094 -32.55203 -32.09185 -30.60606 -30.13986 -28.81818 -27.74777 -27.48348 -26.35183 -25.15559 -22.67039 -22.34752 -21.97316 -21.11834 -19.92117 -18.91723 -18.05961 -17.50713 -17.14400 -16.74040 -16.47060 -16.38329 -16.10007 -15.69415 -15.54730 -15.10583 -14.89576 -14.48266 -14.19674 -14.02156 -13.80659 -13.52358 -13.49273 -13.41795 -12.84293 -12.76033 -12.71978 -12.51222 -12.25507 -12.05506 -11.76331 -11.66386 -11.60389 -11.45541 -11.37648 -11.15111 -10.96329 -10.83507 -10.70729 -10.41688 -9.60260 -9.60109 -9.10548 -8.77740 -8.64243 -8.15204 -8.13279 -6.87016 -6.40134 -3.97628 1.14690 1.23373 2.16662 2.28278 2.87022 2.97080 3.15124 3.17557 3.18931 3.21002 3.32630 3.70233 4.01737 4.50369 4.57622 4.63069 4.73227 4.79069 4.82773 4.83627 4.97482 4.99723 5.09033 5.12201 5.15972 5.21848 5.30008 5.31430 5.35341 5.37596 5.53896 5.73635 5.81415 5.90826 6.11277 6.20239 6.22796 6.26500 6.37952 6.42095 6.79688 6.92061 6.99952 7.07889 7.16511 7.21652 7.36316 7.49668 7.79529 7.86632 8.05234 8.51676 9.05712 9.75848 10.77867 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.002114 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.741134 B =13242.336934 C =14363.732374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.164 3.836 4 C -0.244 4.244 5 C -0.029 4.029 6 C -0.132 4.132 7 C -0.086 4.086 8 C 0.508 3.492 9 O -0.518 6.518 10 N -0.664 5.664 11 C 0.038 3.962 12 C -0.095 4.095 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.221 4.221 25 C -0.065 4.065 26 C 0.185 3.815 27 O -0.307 6.307 28 C 0.026 3.974 29 C -0.243 4.243 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.401 0.599 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 -12.418 24.259 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.119 3.881 4 C -0.263 4.263 5 C -0.048 4.048 6 C -0.133 4.133 7 C -0.126 4.126 8 C 0.295 3.705 9 O -0.393 6.393 10 N -0.309 5.309 11 C -0.054 4.054 12 C -0.115 4.115 13 C -0.198 4.198 14 C 0.091 3.909 15 O -0.081 6.081 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.241 4.241 25 C -0.085 4.085 26 C 0.138 3.862 27 O -0.219 6.219 28 C -0.069 4.069 29 C -0.262 4.262 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.348 -12.805 23.308 28.189 hybrid contribution -0.755 -0.151 -0.393 0.865 sum -10.104 -12.956 22.915 28.197 Atomic orbital electron populations 1.23073 0.78158 1.03912 1.01604 1.86043 1.21596 1.27055 1.88454 1.18640 0.91495 0.84143 0.93845 1.21049 0.99996 0.92032 1.13198 1.20586 0.92614 0.97374 0.94180 1.18493 0.92626 0.92078 1.10112 1.20388 1.02429 0.94878 0.94918 1.20594 0.78012 0.80707 0.91207 1.90713 1.51401 1.51597 1.45554 1.43229 1.59640 1.19336 1.08729 1.17268 0.97073 1.07583 0.83517 1.20364 0.94418 1.00483 0.96210 1.19986 1.02196 1.07598 0.90051 1.19405 0.92336 0.92643 0.86478 1.83970 1.42951 1.70786 1.10426 1.21279 1.03747 1.36283 0.85315 0.89136 1.25270 0.97404 0.96242 0.97609 1.70037 1.23619 1.35203 1.21078 0.85792 0.79442 0.79055 0.79228 1.19513 1.20313 1.19501 1.21106 0.99902 1.05984 0.97062 1.20853 0.98635 0.97902 0.91099 1.18399 0.82506 0.92491 0.92768 1.86101 1.15096 1.32793 1.87919 1.23100 0.96866 0.85411 1.01492 1.20296 0.92694 0.97417 1.15809 0.88265 0.92535 0.92388 0.85330 0.85081 0.88250 0.87781 0.76517 0.86766 0.86128 0.92042 0.85312 0.85767 0.88052 0.92329 0.92589 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.31 10.49 -19.41 -0.20 -3.51 16 3 C 0.16 1.88 6.68 -39.24 -0.26 1.62 16 4 C -0.24 -2.51 9.04 -39.41 -0.36 -2.87 16 5 C -0.03 -0.31 9.67 -39.63 -0.38 -0.69 16 6 C -0.13 -1.57 4.39 -104.45 -0.46 -2.03 16 7 C -0.09 -0.89 5.55 -29.04 -0.16 -1.05 16 8 C 0.51 7.47 7.67 -10.99 -0.08 7.39 16 9 O -0.52 -9.97 13.47 5.55 0.07 -9.89 16 10 N -0.66 -9.30 5.34 -9.82 -0.05 -9.35 16 11 C 0.04 0.69 6.30 -83.63 -0.53 0.17 16 12 C -0.09 -1.70 9.96 -39.42 -0.39 -2.09 16 13 C -0.18 -3.81 9.98 -39.42 -0.39 -4.20 16 14 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 15 O -0.18 -5.18 9.75 0.03 0.00 -5.18 16 16 C -0.39 -11.17 9.48 30.88 0.29 -10.88 16 17 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.22 -5.15 9.16 -39.42 -0.36 -5.51 16 25 C -0.06 -1.36 8.69 -39.42 -0.34 -1.70 16 26 C 0.18 2.32 6.66 -39.23 -0.26 2.06 16 27 O -0.31 -3.73 9.63 -19.40 -0.19 -3.92 16 28 C 0.03 0.22 9.81 101.05 0.99 1.22 16 29 C -0.24 -2.87 8.97 -39.29 -0.35 -3.22 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 32 H 0.06 0.35 7.66 -51.92 -0.40 -0.05 16 33 H 0.13 1.00 6.29 -52.49 -0.33 0.67 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.10 0.94 7.69 -51.93 -0.40 0.54 16 37 H 0.40 3.95 8.82 -40.82 -0.36 3.59 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 3.03 5.63 -52.49 -0.30 2.73 16 42 H 0.12 2.59 6.23 -52.48 -0.33 2.26 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 45 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 46 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -36.66 390.80 -6.73 -43.39 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.57 Total: 7.78 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.42 Total: -16.29 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.71 Total: -34.29 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.32 Total: -22.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.66 -6.73 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019600220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.922 kcal (2) G-P(sol) polarization free energy of solvation -36.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds