Wall clock time and date at job start Tue Mar 31 2020 05:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35894 * 117.00037 * 2 1 4 4 C 1.38803 * 120.02951 * 0.02562 * 3 2 1 5 5 C 1.38147 * 120.05697 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11242 * 359.74631 * 5 4 3 7 7 C 1.50694 * 119.97608 * 180.25076 * 6 5 4 8 8 C 1.50697 * 109.47686 * 265.25259 * 7 6 5 9 9 O 1.21294 * 119.99654 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.39995 * 119.99922 * 175.49434 * 10 8 7 12 12 C 1.38921 * 119.99911 * 214.84572 * 11 10 8 13 13 C 1.38001 * 119.99476 * 179.79289 * 12 11 10 14 14 C 1.38909 * 120.00502 * 0.46099 * 13 12 11 15 15 O 1.35772 * 119.99935 * 179.77060 * 14 13 12 16 16 C 1.34814 * 116.99785 * 185.36785 * 15 14 13 17 17 H 1.07998 * 120.00036 * 354.95927 * 16 15 14 18 18 C 1.38636 * 119.99974 * 174.96106 * 16 15 14 19 19 N 1.31571 * 119.99979 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47134 * 60.00046 * 20 18 16 22 22 H 1.48496 * 109.47046 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47092 * 300.00234 * 20 18 16 24 24 C 1.38904 * 119.99930 * 359.79387 * 14 13 12 25 25 C 1.38006 * 120.00313 * 359.97286 * 24 14 13 26 26 C 1.38758 * 120.05111 * 0.50447 * 6 5 4 27 27 O 1.35892 * 120.02720 * 179.76394 * 26 6 5 28 28 C 1.42903 * 117.00009 * 179.72078 * 27 26 6 29 29 C 1.38610 * 120.03043 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47664 * 300.00170 * 1 2 3 32 32 H 1.09010 * 109.47078 * 60.00410 * 1 2 3 33 33 H 1.08002 * 119.96566 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.94874 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47226 * 25.26150 * 7 6 5 36 36 H 1.09005 * 109.47206 * 145.25363 * 7 6 5 37 37 H 0.96999 * 119.99875 * 355.49254 * 10 8 7 38 38 H 1.08002 * 120.00100 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.99925 * 180.23327 * 13 12 11 40 40 H 0.97002 * 119.99990 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.99827 * 179.97438 * 24 14 13 42 42 H 1.08004 * 119.99838 * 179.97438 * 25 24 14 43 43 H 1.09000 * 109.47233 * 180.02562 * 28 27 26 44 44 H 1.09003 * 109.46565 * 60.00912 * 28 27 26 45 45 H 1.08991 * 109.47532 * 300.00851 * 28 27 26 46 46 H 1.07997 * 120.05382 * 0.03889 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9171 3.6065 0.0011 6 6 3.2971 3.6822 0.0064 7 6 3.9773 5.0268 0.0126 8 6 4.3143 5.4261 -1.4009 9 8 4.0296 4.6911 -2.3228 10 7 4.9320 6.5996 -1.6406 11 6 5.3297 6.9283 -2.9421 12 6 6.4970 7.6522 -3.1497 13 6 6.8912 7.9724 -4.4329 14 6 6.1158 7.5792 -5.5163 15 8 6.5013 7.8983 -6.7784 16 6 5.6502 7.5850 -7.7759 17 1 4.7488 7.0299 -7.5623 18 6 5.9322 7.9753 -9.0760 19 7 7.0307 8.6511 -9.3363 20 14 4.7533 7.5406 -10.4582 21 1 3.4243 8.1430 -10.1831 22 1 5.2802 8.0681 -11.7424 23 1 4.6187 6.0644 -10.5480 24 6 4.9458 6.8599 -5.3083 25 6 4.5540 6.5354 -4.0255 26 6 4.0567 2.5210 0.0006 27 8 5.4135 2.5961 0.0009 28 6 6.1316 1.3605 0.0010 29 6 3.4301 1.2841 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 0.2120 2.3187 0.0014 34 1 1.3277 4.5114 0.0011 35 1 3.3105 5.7694 0.4508 36 1 4.8927 4.9682 0.6016 37 1 5.1010 7.2166 -0.9115 38 1 7.0980 7.9611 -2.3072 39 1 7.8007 8.5320 -4.5946 40 1 7.2278 8.9245 -10.2459 41 1 4.3428 6.5546 -6.1506 42 1 3.6441 5.9765 -3.8638 43 1 7.2027 1.5628 0.0018 44 1 5.8702 0.7884 -0.8892 45 1 5.8696 0.7880 0.8907 46 1 4.0196 0.3792 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019600220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:34 Heat of formation + Delta-G solvation = -100.570268 kcal Electronic energy + Delta-G solvation = -30467.299807 eV Core-core repulsion = 26095.051466 eV Total energy + Delta-G solvation = -4372.248342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.78238 -41.20527 -40.28421 -39.87450 -38.21493 -37.47119 -35.31265 -34.18148 -33.35394 -31.84121 -31.38019 -30.00135 -28.80142 -28.13591 -27.50320 -26.92724 -24.04528 -23.48635 -23.13684 -22.35518 -21.18647 -19.95429 -19.65121 -19.14032 -18.05413 -17.95118 -17.91711 -17.22559 -16.84805 -16.46454 -16.45171 -16.41054 -16.23216 -15.76060 -15.63413 -15.48824 -15.32426 -14.94789 -14.63568 -14.61209 -14.30375 -14.09749 -13.58786 -13.46657 -13.36081 -13.24987 -13.17457 -12.95079 -12.74314 -12.62853 -12.44089 -12.42132 -12.25519 -12.15188 -11.86321 -11.57259 -11.39810 -11.08638 -10.74931 -10.47538 -9.82134 -9.59018 -8.95231 -8.58105 -8.46707 -6.13486 0.32839 0.41603 0.53308 0.59197 1.33943 1.43648 1.49821 1.76444 2.17073 2.18057 2.23861 2.44672 2.78784 2.83298 3.15968 3.52745 3.75202 3.77687 3.99896 4.06213 4.13806 4.14608 4.21357 4.22700 4.34496 4.38677 4.41262 4.47286 4.49672 4.57889 4.62742 4.68039 4.69658 4.74335 4.79241 4.83782 5.07827 5.12735 5.16853 5.33148 5.37338 5.45059 5.48524 5.61788 5.64206 5.71454 6.02440 6.20350 6.26119 6.44410 6.65538 6.97681 7.36653 7.77596 8.75776 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.002114 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.741134 B =13242.336934 C =14363.732374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.152 3.848 4 C -0.248 4.248 5 C -0.033 4.033 6 C -0.153 4.153 7 C -0.074 4.074 8 C 0.507 3.493 9 O -0.566 6.566 10 N -0.651 5.651 11 C 0.066 3.934 12 C -0.079 4.079 13 C -0.180 4.180 14 C 0.104 3.896 15 O -0.228 6.228 16 C -0.414 4.414 17 H 0.095 0.905 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.231 4.231 25 C -0.077 4.077 26 C 0.167 3.833 27 O -0.324 6.324 28 C 0.020 3.980 29 C -0.261 4.261 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.427 0.573 38 H 0.167 0.833 39 H 0.128 0.872 40 H 0.273 0.727 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -12.620 27.360 32.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.107 3.893 4 C -0.267 4.267 5 C -0.051 4.051 6 C -0.155 4.155 7 C -0.113 4.113 8 C 0.297 3.703 9 O -0.443 6.443 10 N -0.299 5.299 11 C -0.028 4.028 12 C -0.099 4.099 13 C -0.200 4.200 14 C 0.054 3.946 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.113 0.887 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.835 3.165 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.250 4.250 25 C -0.098 4.098 26 C 0.121 3.879 27 O -0.237 6.237 28 C -0.075 4.075 29 C -0.281 4.281 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.266 0.734 38 H 0.185 0.815 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.867 -13.007 26.514 31.469 hybrid contribution -0.354 -0.239 -0.964 1.054 sum -11.221 -13.245 25.551 30.890 Atomic orbital electron populations 1.23368 0.76161 1.05619 1.02438 1.86021 1.23734 1.26858 1.88333 1.18864 0.91676 0.84972 0.93825 1.21369 1.01225 0.91665 1.12419 1.20965 0.92523 0.98445 0.93202 1.18817 0.93336 0.92575 1.10729 1.20431 1.04080 0.95076 0.91723 1.21467 0.76398 0.79849 0.92618 1.90712 1.53108 1.52999 1.47524 1.43190 1.59117 1.20031 1.07539 1.17422 0.95905 1.04531 0.84942 1.20805 0.94164 0.98691 0.96229 1.20333 1.02021 1.07122 0.90537 1.19934 0.94009 0.94406 0.86278 1.83931 1.44296 1.73334 1.11882 1.21709 1.04250 1.36939 0.86146 0.88730 1.26523 0.99348 0.95909 1.00043 1.70170 1.26028 1.37498 1.21878 0.84697 0.77164 0.79136 0.75529 1.18224 1.19192 1.18593 1.21097 0.99654 1.06371 0.97922 1.20923 0.99326 0.98490 0.91012 1.18676 0.82827 0.93105 0.93298 1.86049 1.15170 1.34431 1.88058 1.23302 0.97474 0.84718 1.01955 1.20493 0.93366 0.97711 1.16486 0.86282 0.91047 0.92103 0.83073 0.82606 0.84134 0.85991 0.73426 0.81522 0.85385 0.91777 0.86805 0.85778 0.86384 0.93109 0.90927 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.68 10.49 -92.36 -0.97 -7.65 16 3 C 0.15 3.35 6.68 22.49 0.15 3.50 16 4 C -0.25 -4.63 9.04 22.38 0.20 -4.43 16 5 C -0.03 -0.62 9.67 22.24 0.22 -0.41 16 6 C -0.15 -3.30 4.39 -19.75 -0.09 -3.39 16 7 C -0.07 -1.24 5.55 29.10 0.16 -1.08 16 8 C 0.51 13.36 7.67 87.66 0.67 14.03 16 9 O -0.57 -21.00 13.47 -3.07 -0.04 -21.04 16 10 N -0.65 -15.56 5.34 -303.38 -1.62 -17.18 16 11 C 0.07 2.23 6.30 38.16 0.24 2.47 16 12 C -0.08 -2.58 9.96 22.38 0.22 -2.36 16 13 C -0.18 -7.62 9.98 22.37 0.22 -7.39 16 14 C 0.10 5.39 6.65 22.59 0.15 5.54 16 15 O -0.23 -14.06 9.75 -22.82 -0.22 -14.29 16 16 C -0.41 -25.06 9.48 67.92 0.64 -24.42 16 17 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 19 N -0.92 -57.14 13.67 21.61 0.30 -56.85 16 20 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 24 C -0.23 -11.15 9.16 22.37 0.20 -10.94 16 25 C -0.08 -3.21 8.69 22.38 0.19 -3.01 16 26 C 0.17 4.02 6.66 22.50 0.15 4.17 16 27 O -0.32 -7.52 9.63 -92.33 -0.89 -8.41 16 28 C 0.02 0.32 9.81 113.37 1.11 1.43 16 29 C -0.26 -6.09 8.97 22.46 0.20 -5.89 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.55 7.66 -2.39 -0.02 0.54 16 32 H 0.06 0.62 7.66 -2.38 -0.02 0.60 16 33 H 0.15 1.97 6.29 -2.91 -0.02 1.95 16 34 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.14 1.21 8.05 -2.39 -0.02 1.19 16 36 H 0.12 1.67 7.69 -2.38 -0.02 1.65 16 37 H 0.43 6.03 8.82 -92.71 -0.82 5.21 16 38 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.11 5.70 5.63 -2.91 -0.02 5.68 16 42 H 0.12 5.17 6.23 -2.91 -0.02 5.15 16 43 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 0.88 7.66 -2.39 -0.02 0.86 16 45 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 46 H 0.14 2.89 6.30 -2.91 -0.02 2.88 16 Total: -1.00 -86.37 390.80 5.04 -81.33 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.23 Total: 29.23 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 6.24 Total: -31.59 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.32 Total: -74.03 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -2.12 Total: -51.39 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -86.37 5.04 -81.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019600220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.243 kcal (2) G-P(sol) polarization free energy of solvation -86.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds