Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47544 * 2 1 4 4 C 1.35966 * 116.99902 * 180.02562 * 3 2 1 5 5 C 1.38734 * 119.97849 * 179.97438 * 4 3 2 6 6 C 1.38085 * 120.01248 * 179.97438 * 5 4 3 7 7 C 1.38864 * 119.98479 * 359.97438 * 6 5 4 8 8 N 1.40034 * 120.01490 * 179.97438 * 7 6 5 9 9 C 1.36589 * 119.99856 * 141.82705 * 8 7 6 10 10 N 1.36558 * 119.99863 * 185.46455 * 9 8 7 11 11 N 1.32417 * 120.00128 * 5.47009 * 9 8 7 12 12 C 1.33881 * 119.99953 * 169.51551 * 11 9 8 13 13 N 1.32709 * 118.81663 * 354.00899 * 12 11 9 14 14 C 1.31935 * 122.29094 * 179.97438 * 13 12 11 15 15 C 1.50699 * 120.18250 * 179.97438 * 14 13 12 16 16 C 1.40856 * 119.63991 * 359.97438 * 14 13 12 17 17 C 1.40501 * 121.07190 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00227 * 32.90899 * 17 16 14 19 19 C 1.39868 * 119.99726 * 212.90117 * 17 16 14 20 20 N 1.30985 * 120.00414 * 25.35668 * 19 17 16 21 21 Si 1.86809 * 119.99990 * 205.35778 * 19 17 16 22 22 H 1.48498 * 109.46984 * 59.99920 * 21 19 17 23 23 H 1.48497 * 109.47126 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46795 * 300.00137 * 21 19 17 25 25 C 1.47410 * 117.84794 * 0.02562 * 16 14 13 26 26 O 1.21768 * 121.05796 * 179.97438 * 25 16 14 27 27 N 1.35150 * 117.88694 * 359.75294 * 25 16 14 28 28 H 0.96999 * 120.02439 * 180.25758 * 27 25 16 29 29 C 1.38864 * 119.96768 * 0.25423 * 7 6 5 30 30 C 1.38080 * 119.98060 * 359.51498 * 29 7 6 31 31 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46804 * 300.00504 * 1 2 3 33 33 H 1.09003 * 109.46874 * 60.00002 * 1 2 3 34 34 H 1.09004 * 109.46804 * 239.99496 * 2 1 3 35 35 H 1.09003 * 109.46874 * 119.99998 * 2 1 3 36 36 H 1.07997 * 119.99259 * 359.97438 * 5 4 3 37 37 H 1.08007 * 120.00579 * 179.97438 * 6 5 4 38 38 H 0.97005 * 119.99994 * 321.82796 * 8 7 6 39 39 H 0.96999 * 119.99464 * 150.92365 * 10 9 8 40 40 H 0.97001 * 120.00174 * 330.64217 * 10 9 8 41 41 H 1.09008 * 109.46928 * 359.97438 * 15 14 13 42 42 H 1.09004 * 109.47077 * 119.99259 * 15 14 13 43 43 H 1.08993 * 109.47610 * 239.99922 * 15 14 13 44 44 H 0.96998 * 120.00568 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.01025 * 179.71796 * 29 7 6 46 46 H 1.08007 * 119.99294 * 180.23127 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8843 2.8074 -0.0011 6 6 5.2531 2.9890 -0.0011 7 6 6.0993 1.8880 0.0000 8 7 7.4876 2.0714 -0.0006 9 6 8.2866 1.2398 0.7313 10 7 9.6270 1.4851 0.8209 11 7 7.7615 0.1957 1.3538 12 6 8.5605 -0.7334 1.8933 13 7 9.8688 -0.6494 1.6877 14 6 10.7185 -1.5267 2.1869 15 6 12.1954 -1.3859 1.9229 16 6 10.2375 -2.5957 2.9679 17 6 11.1153 -3.5473 3.5137 18 1 12.1092 -3.2536 3.8175 19 6 10.7018 -4.8750 3.6638 20 7 9.7599 -5.3589 2.8928 21 14 11.4929 -5.9584 4.9639 22 1 11.2749 -5.3609 6.3057 23 1 10.8828 -7.3115 4.9189 24 1 12.9505 -6.0641 4.7000 25 6 8.7834 -2.6843 3.1931 26 8 8.3045 -3.5845 3.8586 27 7 7.9991 -1.7320 2.6412 28 1 7.0384 -1.7581 2.7727 29 6 5.5681 0.6050 -0.0043 30 6 4.1991 0.4249 0.0006 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2261 3.6636 -0.0015 37 1 5.6656 3.9873 -0.0020 38 1 7.8818 2.7891 -0.5207 39 1 10.1186 1.2098 1.6104 40 1 10.0882 1.9310 0.0933 41 1 12.3717 -0.5058 1.3044 42 1 12.7250 -1.2771 2.8695 43 1 12.5580 -2.2729 1.4037 44 1 9.4734 -6.2798 2.9967 45 1 6.2256 -0.2519 -0.0080 46 1 3.7858 -0.5729 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020503585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = 48.168847 kcal Electronic energy + Delta-G solvation = -31222.727408 eV Core-core repulsion = 26921.514381 eV Total energy + Delta-G solvation = -4301.213027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.28492 -39.63251 -38.68800 -37.15789 -35.75464 -34.47036 -33.47684 -32.76216 -31.82334 -31.26151 -30.82132 -29.42859 -28.04137 -27.63354 -24.84436 -24.11332 -23.07555 -22.01846 -21.62789 -20.81263 -19.77131 -18.26506 -18.26373 -17.82938 -17.04692 -16.50807 -16.16701 -15.94889 -15.62617 -15.56511 -15.32302 -14.80481 -14.36957 -14.14169 -13.85264 -13.51131 -13.41526 -13.37111 -13.06452 -13.00227 -12.74578 -12.38676 -12.27718 -12.11687 -11.91677 -11.81682 -11.68254 -11.31986 -11.23494 -11.19307 -10.78529 -10.73920 -10.68957 -10.48302 -9.58751 -9.40951 -9.14893 -8.93615 -8.83145 -8.48789 -8.41711 -7.98292 -7.52095 -7.06186 -6.55266 -4.04089 1.37646 1.50639 2.00138 2.97986 2.99660 3.07680 3.10210 3.19611 3.27336 3.83818 3.89904 4.00902 4.22418 4.64216 4.75227 4.75683 4.80270 4.93901 5.03916 5.08417 5.25452 5.39742 5.44347 5.55093 5.58315 5.60667 5.78218 5.82181 5.91992 6.10970 6.11431 6.33000 6.49408 6.54211 6.59550 6.75379 6.77026 6.84795 6.99194 7.13017 7.21923 7.39055 7.47476 7.52072 7.64830 8.01537 8.02799 8.22013 8.48209 8.59372 8.63380 9.17720 9.62789 9.73607 10.04036 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.002603 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.271385 B =10755.035155 C =12773.171606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.321 6.321 4 C 0.105 3.895 5 C -0.139 4.139 6 C -0.114 4.114 7 C 0.140 3.860 8 N -0.659 5.659 9 C 0.629 3.371 10 N -0.848 5.848 11 N -0.596 5.596 12 C 0.407 3.593 13 N -0.512 5.512 14 C -0.082 4.082 15 C -0.043 4.043 16 C -0.011 4.011 17 C -0.396 4.396 18 H 0.093 0.907 19 C 0.078 3.922 20 N -0.728 5.728 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.264 1.264 25 C 0.524 3.476 26 O -0.542 6.542 27 N -0.624 5.624 28 H 0.392 0.608 29 C -0.063 4.063 30 C -0.190 4.190 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.410 0.590 39 H 0.425 0.575 40 H 0.380 0.620 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.287 0.713 45 H 0.149 0.851 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 13.376 -8.137 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.236 6.236 4 C 0.060 3.940 5 C -0.158 4.158 6 C -0.136 4.136 7 C 0.044 3.956 8 N -0.293 5.293 9 C 0.267 3.733 10 N -0.410 5.410 11 N -0.339 5.339 12 C 0.057 3.943 13 N -0.240 5.240 14 C -0.208 4.208 15 C -0.101 4.101 16 C -0.020 4.020 17 C -0.424 4.424 18 H 0.111 0.889 19 C -0.148 4.148 20 N -0.348 5.348 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.189 1.189 25 C 0.319 3.681 26 O -0.420 6.420 27 N -0.270 5.270 28 H 0.227 0.773 29 C -0.083 4.083 30 C -0.210 4.210 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.246 0.754 39 H 0.269 0.731 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.167 0.833 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.800 12.841 -7.938 17.999 hybrid contribution 0.863 -1.006 0.852 1.576 sum -8.937 11.836 -7.086 16.437 Atomic orbital electron populations 1.21767 0.93020 1.02751 1.03278 1.22747 0.95569 0.82228 1.01598 1.86024 1.19331 1.29027 1.89184 1.18939 0.82068 0.94164 0.98831 1.20047 0.94275 0.94651 1.06826 1.20641 0.92178 0.97714 1.03020 1.17366 0.81761 0.93442 1.03017 1.41158 1.03651 1.34155 1.50296 1.18216 0.80300 0.86421 0.88400 1.43352 1.05855 1.67449 1.24391 1.68296 1.33308 1.04119 1.28204 1.18657 0.86011 0.90949 0.98703 1.67410 0.99882 1.30021 1.26648 1.20210 0.94253 0.99951 1.06374 1.19877 0.91439 0.99608 0.99195 1.20067 0.89638 0.96134 0.96193 1.19206 0.99912 0.91724 1.31555 0.88943 1.25941 0.94241 0.99053 0.95594 1.69777 1.19703 1.15766 1.29581 0.86284 0.79598 0.78488 0.81973 1.18642 1.20209 1.18908 1.19230 0.88324 0.80662 0.79918 1.90709 1.76163 1.33721 1.41382 1.43892 1.11085 1.25469 1.46545 0.77260 1.21213 0.94181 0.97486 0.95458 1.21161 0.93930 0.97925 1.07970 0.90482 0.91621 0.91709 0.92103 0.91918 0.85441 0.85530 0.75365 0.73083 0.79265 0.94047 0.93956 0.93305 0.90206 0.83325 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -3.83 10.14 -19.63 -0.20 -4.03 16 4 C 0.11 1.32 6.69 -39.22 -0.26 1.06 16 5 C -0.14 -1.57 9.98 -39.45 -0.39 -1.96 16 6 C -0.11 -1.23 9.96 -39.41 -0.39 -1.62 16 7 C 0.14 1.78 6.25 -83.65 -0.52 1.26 16 8 N -0.66 -7.71 5.41 -11.16 -0.06 -7.77 16 9 C 0.63 9.64 8.36 -320.05 -2.68 6.97 16 10 N -0.85 -11.65 7.67 30.14 0.23 -11.42 16 11 N -0.60 -11.25 7.13 -14.54 -0.10 -11.35 16 12 C 0.41 9.06 8.26 -323.00 -2.67 6.39 16 13 N -0.51 -11.32 6.16 -9.71 -0.06 -11.38 16 14 C -0.08 -1.97 6.89 -81.56 -0.56 -2.54 16 15 C -0.04 -0.88 9.18 36.00 0.33 -0.55 16 16 C -0.01 -0.29 5.58 -104.32 -0.58 -0.88 16 17 C -0.40 -10.41 8.28 -38.12 -0.32 -10.72 16 18 H 0.09 2.25 7.36 -52.49 -0.39 1.87 16 19 C 0.08 2.01 4.47 -17.30 -0.08 1.94 16 20 N -0.73 -19.84 11.30 55.55 0.63 -19.21 16 21 Si 0.91 19.29 29.63 -169.99 -5.04 14.25 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C 0.52 14.34 7.51 -12.36 -0.09 14.25 16 26 O -0.54 -16.05 15.00 5.13 0.08 -15.98 16 27 N -0.62 -14.88 5.34 -14.07 -0.08 -14.95 16 28 H 0.39 8.64 8.91 -40.82 -0.36 8.28 16 29 C -0.06 -0.90 8.59 -39.41 -0.34 -1.24 16 30 C -0.19 -2.49 9.03 -39.46 -0.36 -2.85 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.41 3.33 8.94 -40.82 -0.36 2.96 16 39 H 0.42 6.88 6.39 -40.82 -0.26 6.62 16 40 H 0.38 3.90 8.95 -40.82 -0.37 3.53 16 41 H 0.04 0.73 8.12 -51.92 -0.42 0.31 16 42 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.29 7.21 8.30 -40.82 -0.34 6.87 16 45 H 0.15 2.48 6.28 -52.49 -0.33 2.15 16 46 H 0.13 1.49 6.29 -52.48 -0.33 1.16 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -32.60 385.27 -12.82 -45.41 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -5.70 Total: 21.09 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -8.33 Total: 9.52 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: 0.56 Total: -76.07 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.12 Total: -20.01 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.04 Total: 14.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.60 -12.82 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020503585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.582 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds