Wall clock time and date at job start Tue Mar 31 2020 05:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47544 * 2 1 4 4 C 1.35966 * 116.99902 * 180.02562 * 3 2 1 5 5 C 1.38734 * 119.97849 * 179.97438 * 4 3 2 6 6 C 1.38085 * 120.01248 * 179.97438 * 5 4 3 7 7 C 1.38864 * 119.98479 * 359.97438 * 6 5 4 8 8 N 1.40034 * 120.01490 * 179.97438 * 7 6 5 9 9 C 1.36589 * 119.99856 * 141.82705 * 8 7 6 10 10 N 1.36558 * 119.99863 * 185.46455 * 9 8 7 11 11 N 1.32417 * 120.00128 * 5.47009 * 9 8 7 12 12 C 1.33881 * 119.99953 * 169.51551 * 11 9 8 13 13 N 1.32709 * 118.81663 * 354.00899 * 12 11 9 14 14 C 1.31935 * 122.29094 * 179.97438 * 13 12 11 15 15 C 1.50699 * 120.18250 * 179.97438 * 14 13 12 16 16 C 1.40856 * 119.63991 * 359.97438 * 14 13 12 17 17 C 1.40501 * 121.07190 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00227 * 32.90899 * 17 16 14 19 19 C 1.39868 * 119.99726 * 212.90117 * 17 16 14 20 20 N 1.30985 * 120.00414 * 25.35668 * 19 17 16 21 21 Si 1.86809 * 119.99990 * 205.35778 * 19 17 16 22 22 H 1.48498 * 109.46984 * 59.99920 * 21 19 17 23 23 H 1.48497 * 109.47126 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46795 * 300.00137 * 21 19 17 25 25 C 1.47410 * 117.84794 * 0.02562 * 16 14 13 26 26 O 1.21768 * 121.05796 * 179.97438 * 25 16 14 27 27 N 1.35150 * 117.88694 * 359.75294 * 25 16 14 28 28 H 0.96999 * 120.02439 * 180.25758 * 27 25 16 29 29 C 1.38864 * 119.96768 * 0.25423 * 7 6 5 30 30 C 1.38080 * 119.98060 * 359.51498 * 29 7 6 31 31 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46804 * 300.00504 * 1 2 3 33 33 H 1.09003 * 109.46874 * 60.00002 * 1 2 3 34 34 H 1.09004 * 109.46804 * 239.99496 * 2 1 3 35 35 H 1.09003 * 109.46874 * 119.99998 * 2 1 3 36 36 H 1.07997 * 119.99259 * 359.97438 * 5 4 3 37 37 H 1.08007 * 120.00579 * 179.97438 * 6 5 4 38 38 H 0.97005 * 119.99994 * 321.82796 * 8 7 6 39 39 H 0.96999 * 119.99464 * 150.92365 * 10 9 8 40 40 H 0.97001 * 120.00174 * 330.64217 * 10 9 8 41 41 H 1.09008 * 109.46928 * 359.97438 * 15 14 13 42 42 H 1.09004 * 109.47077 * 119.99259 * 15 14 13 43 43 H 1.08993 * 109.47610 * 239.99922 * 15 14 13 44 44 H 0.96998 * 120.00568 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.01025 * 179.71796 * 29 7 6 46 46 H 1.08007 * 119.99294 * 180.23127 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8843 2.8074 -0.0011 6 6 5.2531 2.9890 -0.0011 7 6 6.0993 1.8880 0.0000 8 7 7.4876 2.0714 -0.0006 9 6 8.2866 1.2398 0.7313 10 7 9.6270 1.4851 0.8209 11 7 7.7615 0.1957 1.3538 12 6 8.5605 -0.7334 1.8933 13 7 9.8688 -0.6494 1.6877 14 6 10.7185 -1.5267 2.1869 15 6 12.1954 -1.3859 1.9229 16 6 10.2375 -2.5957 2.9679 17 6 11.1153 -3.5473 3.5137 18 1 12.1092 -3.2536 3.8175 19 6 10.7018 -4.8750 3.6638 20 7 9.7599 -5.3589 2.8928 21 14 11.4929 -5.9584 4.9639 22 1 11.2749 -5.3609 6.3057 23 1 10.8828 -7.3115 4.9189 24 1 12.9505 -6.0641 4.7000 25 6 8.7834 -2.6843 3.1931 26 8 8.3045 -3.5845 3.8586 27 7 7.9991 -1.7320 2.6412 28 1 7.0384 -1.7581 2.7727 29 6 5.5681 0.6050 -0.0043 30 6 4.1991 0.4249 0.0006 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2261 3.6636 -0.0015 37 1 5.6656 3.9873 -0.0020 38 1 7.8818 2.7891 -0.5207 39 1 10.1186 1.2098 1.6104 40 1 10.0882 1.9310 0.0933 41 1 12.3717 -0.5058 1.3044 42 1 12.7250 -1.2771 2.8695 43 1 12.5580 -2.2729 1.4037 44 1 9.4734 -6.2798 2.9967 45 1 6.2256 -0.2519 -0.0080 46 1 3.7858 -0.5729 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020503585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:08 Heat of formation + Delta-G solvation = 30.329468 kcal Electronic energy + Delta-G solvation = -31223.500982 eV Core-core repulsion = 26921.514381 eV Total energy + Delta-G solvation = -4301.986601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.60177 -41.11039 -39.98747 -38.52452 -37.38793 -36.23019 -34.78511 -34.52462 -32.98284 -32.44253 -31.84285 -31.12262 -29.36966 -29.06243 -26.58683 -24.97257 -24.52204 -23.38713 -22.64387 -22.51179 -21.19159 -20.06101 -19.29100 -18.97818 -18.58032 -18.19465 -17.59867 -17.07245 -16.99013 -16.87525 -16.59396 -16.46101 -15.94657 -15.42991 -15.24600 -14.93064 -14.77587 -14.44599 -14.22354 -14.15905 -14.01225 -13.76524 -13.57056 -13.45591 -13.19883 -13.13735 -12.97112 -12.85678 -12.66292 -12.53760 -12.44139 -12.13519 -11.75772 -11.63442 -11.21647 -10.85533 -10.78668 -10.53854 -10.46135 -10.11991 -9.84793 -9.60740 -8.85834 -8.61649 -8.29260 -5.90279 0.14327 0.47773 0.58913 1.32931 1.36259 1.46635 1.49685 1.77138 2.14673 2.23882 2.34069 2.42797 2.86328 2.96897 3.45490 3.71987 3.91868 4.02155 4.02567 4.06716 4.18676 4.21720 4.36080 4.40806 4.47199 4.56801 4.69991 4.88732 4.95802 4.97024 5.12758 5.13661 5.17671 5.19043 5.22879 5.23924 5.46800 5.53486 5.57900 5.69516 5.74899 5.81202 6.05108 6.15649 6.22982 6.25909 6.52858 6.72162 6.83392 6.85027 7.19795 7.52819 7.70362 7.90199 8.32853 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.002603 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.271385 B =10755.035155 C =12773.171606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.329 6.329 4 C 0.101 3.899 5 C -0.140 4.140 6 C -0.094 4.094 7 C 0.120 3.880 8 N -0.632 5.632 9 C 0.662 3.338 10 N -0.834 5.834 11 N -0.631 5.631 12 C 0.450 3.550 13 N -0.528 5.528 14 C -0.054 4.054 15 C -0.040 4.040 16 C -0.066 4.066 17 C -0.448 4.448 18 H 0.096 0.904 19 C 0.037 3.963 20 N -0.791 5.791 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.243 1.243 25 C 0.504 3.496 26 O -0.580 6.580 27 N -0.621 5.621 28 H 0.397 0.603 29 C -0.080 4.080 30 C -0.202 4.202 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.433 0.567 39 H 0.421 0.579 40 H 0.404 0.596 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.282 0.718 45 H 0.122 0.878 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 17.881 -9.878 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.244 6.244 4 C 0.055 3.945 5 C -0.159 4.159 6 C -0.114 4.114 7 C 0.025 3.975 8 N -0.267 5.267 9 C 0.299 3.701 10 N -0.394 5.394 11 N -0.379 5.379 12 C 0.098 3.902 13 N -0.258 5.258 14 C -0.178 4.178 15 C -0.097 4.097 16 C -0.075 4.075 17 C -0.477 4.477 18 H 0.114 0.886 19 C -0.183 4.183 20 N -0.414 5.414 21 Si 0.796 3.204 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.166 1.166 25 C 0.301 3.699 26 O -0.461 6.461 27 N -0.265 5.265 28 H 0.233 0.767 29 C -0.101 4.101 30 C -0.221 4.221 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.274 0.726 39 H 0.263 0.737 40 H 0.235 0.765 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.140 0.860 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.160 17.458 -9.763 22.435 hybrid contribution 0.583 -1.646 0.980 2.002 sum -9.577 15.812 -8.783 20.467 Atomic orbital electron populations 1.21784 0.91250 1.03951 1.03398 1.22968 0.97012 0.81264 1.01674 1.86027 1.18942 1.30447 1.88981 1.19188 0.82386 0.94607 0.98329 1.20434 0.94982 0.94809 1.05715 1.20943 0.91576 0.98566 1.00337 1.17484 0.82028 0.93546 1.04450 1.41115 1.03308 1.33289 1.49000 1.18523 0.81154 0.85352 0.85051 1.43309 1.05236 1.66076 1.24820 1.68470 1.32447 1.05679 1.31351 1.19430 0.86543 0.89779 0.94493 1.67710 0.99355 1.30316 1.28429 1.20947 0.96346 0.97921 1.02609 1.19917 0.88847 1.00629 1.00313 1.20299 0.89417 0.98375 0.99436 1.19214 1.00533 0.92332 1.35653 0.88648 1.26714 0.94563 1.00158 0.96817 1.69865 1.23416 1.15858 1.32243 0.85368 0.79785 0.76526 0.78733 1.19617 1.20102 1.16623 1.19610 0.89232 0.80895 0.80187 1.90648 1.76804 1.35316 1.43307 1.44022 1.11423 1.25204 1.45869 0.76686 1.21072 0.94415 0.97518 0.97106 1.21200 0.93758 0.98598 1.08591 0.88787 0.91733 0.91304 0.91609 0.92328 0.83152 0.81828 0.72585 0.73663 0.76478 0.91085 0.92791 0.93782 0.90778 0.86020 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.80 5.46 71.98 0.39 1.20 16 3 O -0.33 -7.27 10.14 -93.17 -0.94 -8.22 16 4 C 0.10 2.31 6.69 22.50 0.15 2.46 16 5 C -0.14 -2.63 9.98 22.35 0.22 -2.41 16 6 C -0.09 -1.57 9.96 22.38 0.22 -1.35 16 7 C 0.12 2.63 6.25 38.13 0.24 2.87 16 8 N -0.63 -11.90 5.41 -189.22 -1.02 -12.92 16 9 C 0.66 17.85 8.36 260.52 2.18 20.03 16 10 N -0.83 -19.24 7.67 -58.55 -0.45 -19.69 16 11 N -0.63 -22.64 7.13 -199.91 -1.43 -24.07 16 12 C 0.45 19.74 8.26 261.55 2.16 21.90 16 13 N -0.53 -22.57 6.16 -184.62 -1.14 -23.71 16 14 C -0.05 -2.58 6.89 43.18 0.30 -2.28 16 15 C -0.04 -1.54 9.18 71.24 0.65 -0.89 16 16 C -0.07 -3.71 5.58 -19.67 -0.11 -3.82 16 17 C -0.45 -24.94 8.28 23.22 0.19 -24.75 16 18 H 0.10 4.91 7.36 -2.91 -0.02 4.89 16 19 C 0.04 2.02 4.47 85.21 0.38 2.40 16 20 N -0.79 -46.57 11.30 21.82 0.25 -46.32 16 21 Si 0.97 42.14 29.63 68.60 2.03 44.18 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.24 -9.44 7.11 99.48 0.71 -8.73 16 25 C 0.50 29.05 7.51 86.60 0.65 29.70 16 26 O -0.58 -36.76 15.00 -4.57 -0.07 -36.83 16 27 N -0.62 -30.44 5.34 -316.40 -1.69 -32.13 16 28 H 0.40 18.15 8.91 -92.71 -0.83 17.32 16 29 C -0.08 -2.19 8.59 22.38 0.19 -2.00 16 30 C -0.20 -5.10 9.03 22.35 0.20 -4.89 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.08 7.66 -2.38 -0.02 1.06 16 35 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.43 4.47 8.94 -92.70 -0.83 3.64 16 39 H 0.42 11.98 6.39 -92.71 -0.59 11.38 16 40 H 0.40 6.10 8.95 -92.71 -0.83 5.28 16 41 H 0.07 2.30 8.12 -2.38 -0.02 2.28 16 42 H 0.05 2.00 7.87 -2.39 -0.02 1.98 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 44 H 0.28 15.50 8.30 -92.71 -0.77 14.73 16 45 H 0.12 4.02 6.28 -2.91 -0.02 4.00 16 46 H 0.13 3.04 6.29 -2.91 -0.02 3.02 16 Total: -1.00 -77.23 385.27 2.33 -74.90 By element: Atomic # 1 Polarization: 49.74 SS G_CDS: -1.98 Total: 47.76 kcal Atomic # 6 Polarization: 28.28 SS G_CDS: 8.77 Total: 37.04 kcal Atomic # 7 Polarization: -153.36 SS G_CDS: -5.48 Total: -158.84 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.01 Total: -45.04 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.18 kcal Total: -77.23 2.33 -74.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020503585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.230 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds