Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35978 * 117.00013 * 2 1 4 4 C 1.38536 * 120.08292 * 0.02562 * 3 2 1 5 5 C 1.38250 * 120.01975 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.17926 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.91419 * 180.02562 * 6 5 4 8 8 C 1.38184 * 120.16931 * 0.02562 * 6 5 4 9 9 C 1.38747 * 119.97990 * 359.72827 * 8 6 5 10 10 N 1.40052 * 120.09070 * 180.27864 * 9 8 6 11 11 C 1.36575 * 120.00111 * 26.86760 * 10 9 8 12 12 N 1.36555 * 119.99850 * 5.47302 * 11 10 9 13 13 N 1.32417 * 120.00012 * 185.47355 * 11 10 9 14 14 C 1.33880 * 120.00377 * 187.30954 * 13 11 10 15 15 N 1.32718 * 118.81227 * 5.59996 * 14 13 11 16 16 C 1.31936 * 122.29020 * 179.74588 * 15 14 13 17 17 C 1.50697 * 120.18016 * 180.26695 * 16 15 14 18 18 C 1.40850 * 119.63878 * 0.51419 * 16 15 14 19 19 C 1.40504 * 121.07446 * 179.72492 * 18 16 15 20 20 H 1.07999 * 119.99714 * 327.64734 * 19 18 16 21 21 C 1.39873 * 119.99968 * 147.64614 * 19 18 16 22 22 N 1.30990 * 119.99869 * 335.27782 * 21 19 18 23 23 Si 1.86796 * 119.99817 * 155.27617 * 21 19 18 24 24 H 1.48500 * 109.47149 * 94.99676 * 23 21 19 25 25 H 1.48507 * 109.47005 * 214.99431 * 23 21 19 26 26 H 1.48496 * 109.47387 * 334.98995 * 23 21 19 27 27 C 1.47414 * 117.85289 * 359.75232 * 18 16 15 28 28 O 1.21754 * 121.06198 * 180.02562 * 27 18 16 29 29 N 1.35157 * 117.88065 * 0.02562 * 27 18 16 30 30 H 0.97005 * 120.01534 * 180.02562 * 29 27 18 31 31 H 1.09000 * 109.46777 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47230 * 299.99526 * 1 2 3 33 33 H 1.08998 * 109.46782 * 60.00307 * 1 2 3 34 34 H 1.08002 * 119.99177 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.91162 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.47656 * 89.99315 * 7 6 5 37 37 H 1.08998 * 109.46757 * 210.00175 * 7 6 5 38 38 H 1.09006 * 109.47164 * 329.99092 * 7 6 5 39 39 H 1.08000 * 120.01519 * 180.02562 * 8 6 5 40 40 H 0.97002 * 119.99383 * 206.87134 * 10 9 8 41 41 H 0.96995 * 119.99954 * 37.00659 * 12 11 10 42 42 H 0.96998 * 119.99575 * 217.00295 * 12 11 10 43 43 H 1.09001 * 109.47067 * 270.25045 * 17 16 15 44 44 H 1.09003 * 109.47050 * 30.25345 * 17 16 15 45 45 H 1.09001 * 109.47184 * 150.25600 * 17 16 15 46 46 H 0.96994 * 120.00166 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2935 2.3745 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3033 3.6808 0.0016 7 6 3.9827 5.0260 0.0028 8 6 4.0617 2.5257 0.0011 9 6 3.4375 1.2865 0.0057 10 7 4.2039 0.1143 0.0111 11 6 5.4603 0.1222 0.5465 12 7 5.9270 1.2405 1.1761 13 7 6.2257 -0.9544 0.4551 14 6 7.3963 -1.0006 1.1032 15 7 7.7153 -0.0037 1.9192 16 6 8.8480 0.0186 2.5954 17 6 9.1595 1.1721 3.5138 18 6 9.7669 -1.0389 2.4501 19 6 10.9846 -1.0431 3.1512 20 1 11.4824 -0.1111 3.3742 21 6 11.5519 -2.2544 3.5602 22 7 10.7914 -3.3053 3.7426 23 14 13.3939 -2.3735 3.8465 24 1 13.6861 -2.1581 5.2864 25 1 13.8720 -3.7196 3.4403 26 1 14.0882 -1.3377 3.0401 27 6 9.4101 -2.1410 1.5384 28 8 10.1608 -3.0845 1.3694 29 7 8.2231 -2.0706 0.8959 30 1 7.9570 -2.7790 0.2890 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2149 2.3194 0.0005 35 1 1.3339 4.5112 0.0019 36 1 4.1461 5.3497 1.0306 37 1 4.9411 4.9493 -0.5108 38 1 3.3524 5.7519 -0.5109 39 1 5.1399 2.5873 0.0019 40 1 3.8422 -0.7032 -0.3656 41 1 5.3268 1.7808 1.7132 42 1 6.8589 1.4943 1.0862 43 1 9.6847 1.9482 2.9572 44 1 8.2308 1.5780 3.9151 45 1 9.7882 0.8243 4.3335 46 1 11.1847 -4.1452 4.0266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020555617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = 54.919982 kcal Electronic energy + Delta-G solvation = -31415.238183 eV Core-core repulsion = 27114.317906 eV Total energy + Delta-G solvation = -4300.920276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.73357 -39.58106 -38.47910 -37.46449 -36.00802 -34.55807 -33.74939 -32.72824 -31.89016 -31.20973 -30.03389 -29.07835 -28.03339 -27.60242 -26.08155 -24.81959 -23.23454 -22.09802 -21.21661 -20.77694 -20.04764 -18.44724 -18.20625 -17.41229 -17.06588 -16.49826 -16.38283 -15.91338 -15.77075 -15.39216 -15.07997 -14.84287 -14.50088 -14.20484 -14.07470 -14.03572 -13.78101 -13.45956 -13.04378 -13.01983 -12.51543 -12.30777 -12.25624 -12.14500 -11.96270 -11.72152 -11.69340 -11.31247 -11.27645 -11.27602 -11.20327 -10.96701 -10.73817 -10.45966 -9.89113 -9.45431 -9.27725 -8.90487 -8.62768 -8.45030 -8.41559 -7.82265 -7.61595 -7.07027 -6.54715 -4.04240 1.10774 1.22338 1.98871 2.93285 2.95998 3.07612 3.12828 3.14120 3.26123 3.59163 3.88212 4.01110 4.30695 4.57190 4.59656 4.70011 4.71716 4.81839 4.90570 5.02812 5.15113 5.23102 5.26973 5.47834 5.49345 5.54812 5.67682 5.78597 5.89874 5.94209 6.04333 6.10536 6.37795 6.45771 6.59120 6.66329 6.74343 6.79122 6.88812 6.96781 7.26291 7.40009 7.45440 7.55190 7.69909 8.01776 8.03998 8.23791 8.52361 8.58279 8.61696 9.19203 9.64590 9.75861 10.01932 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002345 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.855961 B =11938.890836 C =12979.833022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.117 4.117 6 C -0.089 4.089 7 C -0.111 4.111 8 C -0.140 4.140 9 C 0.159 3.841 10 N -0.641 5.641 11 C 0.621 3.379 12 N -0.853 5.853 13 N -0.588 5.588 14 C 0.399 3.601 15 N -0.501 5.501 16 C -0.083 4.083 17 C -0.049 4.049 18 C -0.010 4.010 19 C -0.390 4.390 20 H 0.094 0.906 21 C 0.075 3.925 22 N -0.723 5.723 23 Si 0.913 3.087 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.258 1.258 27 C 0.524 3.476 28 O -0.541 6.541 29 N -0.624 5.624 30 H 0.393 0.607 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.155 0.845 40 H 0.425 0.575 41 H 0.386 0.614 42 H 0.420 0.580 43 H 0.036 0.964 44 H 0.041 0.959 45 H 0.058 0.942 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.119 12.926 -5.737 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.231 6.231 3 C 0.031 3.969 4 C -0.194 4.194 5 C -0.136 4.136 6 C -0.090 4.090 7 C -0.168 4.168 8 C -0.162 4.162 9 C 0.060 3.940 10 N -0.272 5.272 11 C 0.259 3.741 12 N -0.419 5.419 13 N -0.328 5.328 14 C 0.049 3.951 15 N -0.228 5.228 16 C -0.209 4.209 17 C -0.106 4.106 18 C -0.019 4.019 19 C -0.418 4.418 20 H 0.112 0.888 21 C -0.152 4.152 22 N -0.343 5.343 23 Si 0.736 3.264 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.181 1.181 27 C 0.318 3.682 28 O -0.419 6.419 29 N -0.270 5.270 30 H 0.228 0.772 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.173 0.827 40 H 0.263 0.737 41 H 0.217 0.783 42 H 0.262 0.738 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.847 11.909 -5.816 22.230 hybrid contribution 0.881 -0.629 0.196 1.100 sum -16.966 11.280 -5.620 21.134 Atomic orbital electron populations 1.23012 0.78413 1.03877 1.01101 1.86046 1.21275 1.26409 1.89352 1.18632 0.90331 0.85011 1.02932 1.20982 0.99633 0.91766 1.07018 1.20715 0.93944 0.96814 1.02175 1.19695 0.93309 0.95190 1.00836 1.20743 1.00451 0.93164 1.02407 1.21409 1.01919 0.89395 1.03468 1.17059 0.86786 0.86992 1.03175 1.41226 1.12794 1.11472 1.61749 1.18023 0.84649 0.84074 0.87326 1.43411 1.15888 1.28041 1.54576 1.68017 1.07889 1.22779 1.34071 1.18486 0.90018 0.87681 0.98916 1.67541 1.21103 1.23297 1.10839 1.20239 0.91312 1.01901 1.07489 1.19941 0.99285 0.94403 0.96989 1.20131 0.94986 0.91500 0.95310 1.19289 1.02877 0.93843 1.25761 0.88777 1.25992 1.00849 0.94792 0.93579 1.69793 1.38744 1.01767 1.23969 0.86215 0.81915 0.79230 0.78995 1.19484 1.19793 1.18141 1.19191 0.79519 0.88276 0.81182 1.90708 1.50432 1.35202 1.65545 1.43867 1.17902 1.22006 1.43181 0.77193 0.88316 0.92766 0.92837 0.85387 0.86046 0.91105 0.91436 0.91757 0.82749 0.73700 0.78328 0.73757 0.94555 0.94016 0.92271 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.38 9.94 -19.67 -0.20 -3.58 16 3 C 0.08 0.87 6.70 -39.07 -0.26 0.61 16 4 C -0.17 -1.58 9.04 -39.47 -0.36 -1.93 16 5 C -0.12 -1.01 9.69 -39.56 -0.38 -1.39 16 6 C -0.09 -0.84 5.88 -104.62 -0.62 -1.45 16 7 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 8 C -0.14 -1.54 7.50 -39.41 -0.30 -1.84 16 9 C 0.16 1.94 6.31 -83.51 -0.53 1.41 16 10 N -0.64 -8.87 5.35 -11.08 -0.06 -8.93 16 11 C 0.62 10.40 8.30 -320.07 -2.66 7.75 16 12 N -0.85 -12.89 4.81 30.14 0.15 -12.74 16 13 N -0.59 -11.85 10.55 -14.54 -0.15 -12.00 16 14 C 0.40 9.25 8.29 -323.00 -2.68 6.57 16 15 N -0.50 -11.39 6.18 -9.71 -0.06 -11.45 16 16 C -0.08 -2.01 6.89 -81.56 -0.56 -2.58 16 17 C -0.05 -0.99 9.65 36.00 0.35 -0.64 16 18 C -0.01 -0.27 5.59 -104.32 -0.58 -0.85 16 19 C -0.39 -10.23 7.88 -38.12 -0.30 -10.53 16 20 H 0.09 2.28 7.30 -52.49 -0.38 1.90 16 21 C 0.07 1.92 4.49 -17.30 -0.08 1.85 16 22 N -0.72 -19.78 11.20 55.55 0.62 -19.16 16 23 Si 0.91 19.18 29.63 -169.99 -5.04 14.14 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 27 C 0.52 14.53 7.51 -12.35 -0.09 14.44 16 28 O -0.54 -16.16 14.92 5.14 0.08 -16.08 16 29 N -0.62 -15.27 5.34 -14.07 -0.08 -15.34 16 30 H 0.39 8.87 8.91 -40.82 -0.36 8.50 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 34 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 35 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 39 H 0.16 1.75 5.64 -52.49 -0.30 1.45 16 40 H 0.42 5.70 8.49 -40.82 -0.35 5.35 16 41 H 0.39 5.11 7.09 -40.82 -0.29 4.82 16 42 H 0.42 6.96 6.66 -40.82 -0.27 6.68 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.22 6.97 -51.93 -0.36 0.86 16 46 H 0.29 7.21 8.30 -40.82 -0.34 6.87 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -32.42 380.54 -12.22 -44.64 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -5.53 Total: 22.60 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: -7.69 Total: 12.16 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: 0.42 Total: -79.62 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.12 Total: -19.66 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.04 Total: 14.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.42 -12.22 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020555617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.558 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds