Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36828 * 125.03322 * 2 1 4 4 H 0.96999 * 125.06904 * 0.04838 * 3 2 1 5 5 C 1.37686 * 109.87154 * 180.02562 * 3 2 1 6 6 C 1.39128 * 133.50786 * 180.02562 * 5 3 2 7 7 C 1.37754 * 119.77991 * 179.26097 * 6 5 3 8 8 C 1.38831 * 120.66248 * 0.63863 * 7 6 5 9 9 C 1.36625 * 120.52888 * 359.57693 * 8 7 6 10 10 C 1.39627 * 119.76506 * 0.02562 * 9 8 7 11 11 C 1.34237 * 125.03455 * 180.02562 * 2 1 3 12 12 C 1.50703 * 126.50203 * 359.92626 * 11 2 1 13 13 H 1.09002 * 109.47293 * 285.74400 * 12 11 2 14 14 C 1.50703 * 109.47334 * 165.74092 * 12 11 2 15 15 O 1.20826 * 120.00126 * 267.63425 * 14 12 11 16 16 O 1.34226 * 120.00150 * 87.62845 * 14 12 11 17 17 N 1.46903 * 109.46839 * 45.74178 * 12 11 2 18 18 C 1.46963 * 110.99658 * 173.70200 * 17 12 11 19 19 C 1.53053 * 109.37898 * 176.82401 * 18 17 12 20 20 N 1.46958 * 109.36426 * 58.38821 * 19 18 17 21 21 C 1.46901 * 110.99593 * 176.81164 * 20 19 18 22 22 C 1.50702 * 109.46953 * 190.00428 * 21 20 19 23 23 H 1.08001 * 119.99901 * 359.97438 * 22 21 20 24 24 C 1.37881 * 120.00315 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99430 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00248 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46818 * 89.99771 * 26 24 22 28 28 H 1.48495 * 109.46995 * 210.00025 * 26 24 22 29 29 H 1.48502 * 109.47109 * 329.99953 * 26 24 22 30 30 C 1.46950 * 110.88404 * 300.68064 * 20 19 18 31 31 C 1.46956 * 111.01805 * 49.89142 * 17 12 11 32 32 H 1.09000 * 109.46928 * 264.56047 * 1 2 3 33 33 H 1.08997 * 109.47281 * 24.56210 * 1 2 3 34 34 H 1.09000 * 109.46815 * 144.56353 * 1 2 3 35 35 H 1.07997 * 120.10852 * 359.97438 * 6 5 3 36 36 H 1.07992 * 119.66783 * 180.24097 * 7 6 5 37 37 H 1.07998 * 119.73509 * 179.60626 * 8 7 6 38 38 H 1.08006 * 120.11545 * 180.02562 * 9 8 7 39 39 H 0.96696 * 117.00629 * 180.02562 * 16 14 12 40 40 H 1.08996 * 109.48642 * 56.84648 * 18 17 12 41 41 H 1.08997 * 109.48657 * 296.79665 * 18 17 12 42 42 H 1.09001 * 109.48802 * 178.36007 * 19 18 17 43 43 H 1.09005 * 109.48738 * 298.42468 * 19 18 17 44 44 H 1.09007 * 109.47174 * 309.99764 * 21 20 19 45 45 H 1.08998 * 109.47519 * 70.00631 * 21 20 19 46 46 H 0.97000 * 119.99467 * 180.02562 * 25 24 22 47 47 H 1.08997 * 109.48945 * 179.29195 * 30 20 19 48 48 H 1.09008 * 109.48682 * 299.35113 * 30 20 19 49 49 H 1.09005 * 109.47009 * 63.20094 * 31 17 12 50 50 H 1.08999 * 109.50705 * 303.15686 * 31 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0325 0.0007 5 6 3.6214 0.7603 -0.0006 6 6 4.8098 1.4837 -0.0004 7 6 6.0159 0.8182 0.0143 8 6 6.0589 -0.5694 0.0156 9 6 4.9041 -1.2996 0.0110 10 6 3.6705 -0.6456 0.0044 11 6 2.2776 -1.0991 -0.0005 12 6 1.8004 -2.5286 0.0004 13 1 1.4218 -2.7847 0.9900 14 6 2.9471 -3.4413 -0.3505 15 8 3.1353 -3.7602 -1.5006 16 8 3.7594 -3.9000 0.6146 17 7 0.7274 -2.6872 -0.9904 18 6 0.3390 -4.0982 -1.1246 19 6 -0.8315 -4.2117 -2.1043 20 7 -0.4353 -3.6514 -3.4038 21 6 -1.5081 -3.8105 -4.3947 22 6 -0.9853 -3.4542 -5.7625 23 1 0.0410 -3.1406 -5.8835 24 6 -1.8176 -3.5277 -6.8594 25 7 -3.0676 -3.9092 -6.7118 26 14 -1.1699 -3.0854 -8.5547 27 1 -0.6155 -4.2999 -9.2051 28 1 -2.2775 -2.5427 -9.3816 29 1 -0.1017 -2.0620 -8.4249 30 6 -0.0473 -2.2405 -3.2697 31 6 1.1231 -2.1269 -2.2900 32 1 -0.3633 -0.0974 1.0231 33 1 -0.3634 0.9346 -0.4272 34 1 -0.3633 -0.8373 -0.5959 35 1 4.7868 2.5634 0.0000 36 1 6.9372 1.3816 0.0184 37 1 7.0128 -1.0757 0.0207 38 1 4.9454 -2.3788 0.0125 39 1 4.4812 -4.4823 0.3410 40 1 0.0379 -4.4866 -0.1517 41 1 1.1847 -4.6740 -1.5003 42 1 -1.1021 -5.2603 -2.2275 43 1 -1.6863 -3.6584 -1.7152 44 1 -1.8517 -4.8450 -4.3953 45 1 -2.3384 -3.1519 -4.1402 46 1 -3.6530 -3.9612 -7.4835 47 1 0.2537 -1.8520 -4.2426 48 1 -0.8933 -1.6648 -2.8939 49 1 1.9779 -2.6801 -2.6791 50 1 1.3940 -1.0783 -2.1670 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020717640.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = -2.848735 kcal Electronic energy + Delta-G solvation = -33436.875434 eV Core-core repulsion = 29236.990462 eV Total energy + Delta-G solvation = -4199.884972 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86228 -40.45084 -38.50214 -37.21107 -36.16605 -35.15299 -32.88058 -32.04216 -31.17586 -30.34679 -30.00001 -28.62314 -27.01749 -26.16188 -24.39330 -23.06651 -22.37766 -22.21196 -21.40182 -21.10743 -19.41125 -19.26630 -18.19493 -17.71057 -16.93779 -16.29845 -16.00662 -15.76209 -15.73508 -15.28705 -14.84901 -14.57462 -14.44467 -14.15326 -14.08468 -13.94865 -13.69337 -13.33873 -13.24188 -12.96726 -12.86075 -12.50157 -12.39877 -12.18475 -11.97443 -11.67687 -11.64613 -11.54493 -11.49080 -11.15194 -11.01467 -10.89556 -10.79617 -10.58935 -10.41959 -10.34381 -10.23243 -9.69670 -9.66419 -9.13864 -8.40047 -8.29736 -8.17895 -7.72877 -7.13744 -5.98828 -3.99476 0.98165 1.48753 2.16678 2.40830 2.88723 3.05973 3.35189 3.40792 3.45130 3.75174 3.94184 4.46375 4.51340 4.64009 4.71798 4.93134 4.99076 5.02844 5.11208 5.22376 5.26157 5.31603 5.36877 5.39613 5.48519 5.55287 5.60941 5.65691 5.78560 5.80188 5.89355 5.91848 6.04491 6.12118 6.19006 6.29165 6.31162 6.44101 6.47330 6.47853 6.52828 6.65769 6.72664 6.80627 6.97733 7.10035 7.14049 7.35668 7.37527 7.41332 7.85594 7.89912 8.14853 8.27380 8.61412 9.08682 9.64621 11.12072 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.002962 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.831518 B = 9449.745648 C = 9885.332354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.129 3.871 3 N -0.591 5.591 4 H 0.416 0.584 5 C 0.097 3.903 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.145 4.145 9 C -0.078 4.078 10 C -0.092 4.092 11 C -0.179 4.179 12 C 0.176 3.824 13 H 0.117 0.883 14 C 0.456 3.544 15 O -0.492 6.492 16 O -0.520 6.520 17 N -0.502 5.502 18 C 0.043 3.957 19 C 0.062 3.938 20 N -0.536 5.536 21 C 0.195 3.805 22 C -0.505 4.505 23 H 0.063 0.937 24 C 0.055 3.945 25 N -0.900 5.900 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.288 1.288 29 H -0.274 1.274 30 C 0.072 3.928 31 C 0.037 3.963 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.402 0.598 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.029 0.971 45 H -0.009 1.009 46 H 0.260 0.740 47 H 0.085 0.915 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.479 8.983 20.391 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.020 3.980 3 N -0.194 5.194 4 H 0.253 0.747 5 C -0.010 4.010 6 C -0.149 4.149 7 C -0.122 4.122 8 C -0.164 4.164 9 C -0.097 4.097 10 C -0.097 4.097 11 C -0.186 4.186 12 C 0.065 3.935 13 H 0.134 0.866 14 C 0.295 3.705 15 O -0.378 6.378 16 O -0.332 6.332 17 N -0.226 5.226 18 C -0.085 4.085 19 C -0.067 4.067 20 N -0.261 5.261 21 C 0.070 3.930 22 C -0.543 4.543 23 H 0.081 0.919 24 C -0.146 4.146 25 N -0.540 5.540 26 Si 0.725 3.275 27 H -0.207 1.207 28 H -0.214 1.214 29 H -0.199 1.199 30 C -0.057 4.057 31 C -0.090 4.090 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.260 0.740 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.009 0.991 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.042 0.958 49 H 0.093 0.907 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.951 9.218 20.057 25.593 hybrid contribution 0.646 0.269 -1.171 1.364 sum 13.597 9.487 18.886 25.131 Atomic orbital electron populations 1.20859 0.86658 1.05172 1.03974 1.20064 0.93681 0.84532 0.99731 1.41757 1.04004 1.08252 1.65435 0.74699 1.18142 0.84630 0.93807 1.04397 1.20000 0.89691 0.98896 1.06322 1.20775 0.96648 0.94395 1.00385 1.20598 0.97850 0.93979 1.03971 1.20530 0.90684 0.99971 0.98480 1.18949 0.92663 0.92138 1.05900 1.19086 0.90811 0.91887 1.16844 1.19750 0.85865 0.88724 0.99134 0.86576 1.24994 0.82843 0.79158 0.83481 1.90755 1.70280 1.55780 1.20989 1.84666 1.42484 1.62777 1.43236 1.62799 1.31981 1.18082 1.09733 1.22441 0.99349 0.87566 0.99134 1.21990 0.94524 1.00041 0.90158 1.62240 1.42027 1.15732 1.06113 1.19688 0.87242 0.96667 0.89440 1.21179 0.97412 1.44363 0.91393 0.91922 1.24979 0.94826 0.95583 0.99212 1.69963 1.05331 1.48224 1.30436 0.86519 0.78335 0.78700 0.83990 1.20655 1.21368 1.19878 1.21975 0.95202 0.90092 0.98398 1.22646 0.99444 0.99621 0.87333 0.90468 0.91812 0.86288 0.86311 0.85876 0.86192 0.86077 0.73969 0.91072 0.92557 0.90938 0.95143 0.95294 0.99120 0.93007 0.89711 0.95767 0.90680 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.92 36.01 0.36 -0.69 16 2 C 0.13 1.43 5.87 -81.77 -0.48 0.95 16 3 N -0.59 -5.84 6.07 -6.95 -0.04 -5.88 16 4 H 0.42 2.83 8.96 -40.82 -0.37 2.47 16 5 C 0.10 1.12 7.28 -83.99 -0.61 0.51 16 6 C -0.13 -1.28 10.08 -39.43 -0.40 -1.68 16 7 C -0.10 -0.99 10.01 -39.54 -0.40 -1.38 16 8 C -0.14 -1.52 9.97 -39.94 -0.40 -1.92 16 9 C -0.08 -0.96 9.25 -39.65 -0.37 -1.33 16 10 C -0.09 -1.20 6.04 -105.14 -0.63 -1.83 16 11 C -0.18 -2.28 4.37 -102.71 -0.45 -2.72 16 12 C 0.18 2.25 2.78 -70.01 -0.19 2.05 16 13 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.46 6.11 4.43 36.01 0.16 6.27 16 15 O -0.49 -8.32 13.14 -18.75 -0.25 -8.56 16 16 O -0.52 -5.30 11.43 -39.25 -0.45 -5.74 16 17 N -0.50 -7.23 2.80 -229.26 -0.64 -7.87 16 18 C 0.04 0.66 5.11 -3.76 -0.02 0.64 16 19 C 0.06 1.13 5.61 -3.76 -0.02 1.11 16 20 N -0.54 -11.92 4.70 -235.90 -1.11 -13.02 16 21 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 22 C -0.50 -14.45 8.47 -34.44 -0.29 -14.75 16 23 H 0.06 1.80 7.13 -52.49 -0.37 1.43 16 24 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 25 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 26 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 30 C 0.07 1.45 5.43 -3.77 -0.02 1.43 16 31 C 0.04 0.63 4.24 -3.77 -0.02 0.61 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 1.40 5.44 -51.93 -0.28 1.12 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.41 4.60 -52.48 -0.24 1.17 16 39 H 0.40 2.56 9.07 45.56 0.41 2.97 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.98 6.00 -51.93 -0.31 0.67 16 42 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.08 1.88 6.79 -51.93 -0.35 1.53 16 48 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.08 1.50 5.56 -51.93 -0.29 1.21 16 50 H 0.07 1.17 5.74 -51.93 -0.30 0.87 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.34 386.15 -11.15 -45.49 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.30 Total: 5.11 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.90 Total: -6.11 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.06 Total: -53.05 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.69 Total: -14.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.34 -11.15 -45.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020717640.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.644 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds