Wall clock time and date at job start Tue Mar 31 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38826 * 119.73647 * 2 1 4 4 C 1.37754 * 120.66667 * 180.02562 * 3 2 1 5 5 C 1.39130 * 119.77956 * 359.97438 * 4 3 2 6 6 N 1.37678 * 133.51299 * 180.02562 * 5 4 3 7 7 H 0.97004 * 125.06678 * 0.02562 * 6 5 4 8 8 C 1.36834 * 109.87592 * 179.75934 * 6 5 4 9 9 C 1.34238 * 109.92898 * 0.40794 * 8 6 5 10 10 C 1.50697 * 126.50349 * 179.86452 * 9 8 6 11 11 H 1.09001 * 109.47372 * 219.68782 * 10 9 8 12 12 C 1.50709 * 109.46881 * 99.69112 * 10 9 8 13 13 O 1.20825 * 119.99307 * 240.00300 * 12 10 9 14 14 O 1.34227 * 119.99890 * 59.99782 * 12 10 9 15 15 N 1.46896 * 109.47387 * 339.69307 * 10 9 8 16 16 C 1.46951 * 111.00239 * 179.97438 * 15 10 9 17 17 C 1.53055 * 109.36408 * 183.18292 * 16 15 10 18 18 N 1.46953 * 109.36514 * 301.59926 * 17 16 15 19 19 C 1.46906 * 110.99875 * 183.18861 * 18 17 16 20 20 C 1.50699 * 109.47140 * 170.00105 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99892 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 120.00241 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47135 * 90.00125 * 24 22 20 26 26 H 1.48503 * 109.47215 * 210.00315 * 24 22 20 27 27 H 1.48508 * 109.46958 * 330.00276 * 24 22 20 28 28 C 1.46951 * 110.88066 * 59.32047 * 18 17 16 29 29 C 1.46966 * 110.99706 * 303.79435 * 15 10 9 30 30 C 1.40674 * 119.32778 * 0.02562 * 5 4 3 31 31 C 1.36627 * 119.73249 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46772 * 89.99956 * 1 2 3 33 33 H 1.08994 * 109.47343 * 209.99952 * 1 2 3 34 34 H 1.09003 * 109.46759 * 330.00875 * 1 2 3 35 35 H 1.07997 * 119.66735 * 0.03994 * 3 2 1 36 36 H 1.07996 * 120.11005 * 179.97438 * 4 3 2 37 37 H 1.07999 * 125.03768 * 180.28949 * 8 6 5 38 38 H 0.96700 * 116.99523 * 179.97438 * 14 12 10 39 39 H 1.09005 * 109.48678 * 63.21907 * 16 15 10 40 40 H 1.08996 * 109.50863 * 303.16254 * 16 15 10 41 41 H 1.09003 * 109.48634 * 181.63290 * 17 16 15 42 42 H 1.08998 * 109.50425 * 61.57881 * 17 16 15 43 43 H 1.09004 * 109.47040 * 290.00043 * 19 18 17 44 44 H 1.09000 * 109.47033 * 49.99995 * 19 18 17 45 45 H 0.97002 * 119.99998 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.48678 * 60.64401 * 28 18 17 47 47 H 1.09004 * 109.48825 * 180.70927 * 28 18 17 48 48 H 1.08998 * 109.48984 * 296.78002 * 29 15 10 49 49 H 1.09004 * 109.48230 * 56.82233 * 29 15 10 50 50 H 1.08002 * 120.12098 * 359.97321 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2055 0.0000 4 6 3.5730 1.2278 -0.0005 5 6 4.2836 0.0316 -0.0005 6 7 5.6261 -0.2735 -0.0005 7 1 6.3455 0.3772 -0.0002 8 6 5.7946 -1.6314 0.0049 9 6 4.5986 -2.2409 -0.0005 10 6 4.3498 -3.7272 -0.0001 11 1 3.5132 -3.9558 -0.6604 12 6 4.0239 -4.1816 1.3994 13 8 4.7220 -5.0025 1.9459 14 8 2.9583 -3.6742 2.0387 15 7 5.5524 -4.4251 -0.4739 16 6 5.3465 -5.8800 -0.4864 17 6 6.6444 -6.5727 -0.9087 18 7 7.0448 -6.0890 -2.2373 19 6 8.2475 -6.7869 -2.7112 20 6 8.4858 -6.4494 -4.1605 21 1 7.8111 -5.7834 -4.6779 22 6 9.5646 -6.9917 -4.8261 23 7 9.7729 -6.6968 -6.0907 24 14 10.7312 -8.1441 -3.9314 25 1 10.2543 -9.5428 -4.0776 26 1 12.0917 -8.0216 -4.5138 27 1 10.7750 -7.7841 -2.4913 28 6 7.2507 -4.6340 -2.2249 29 6 5.9532 -3.9410 -1.8024 30 6 3.5810 -1.1871 -0.0005 31 6 2.1847 -1.1864 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8901 0.5137 35 1 1.6460 2.1351 0.0007 36 1 4.0996 2.1707 -0.0009 37 1 6.7485 -2.1378 0.0105 38 1 2.7893 -3.9965 2.9346 39 1 4.5547 -6.1292 -1.1929 40 1 5.0629 -6.2161 0.5110 41 1 6.4856 -7.6504 -0.9467 42 1 7.4293 -6.3459 -0.1873 43 1 9.1069 -6.4728 -2.1189 44 1 8.1079 -7.8629 -2.6069 45 1 10.5317 -7.0786 -6.5591 46 1 8.0425 -4.3849 -1.5183 47 1 7.5342 -4.2983 -3.2224 48 1 5.1685 -4.1678 -2.5241 49 1 6.1116 -2.8632 -1.7640 50 1 1.6423 -2.1203 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020728368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:22 Heat of formation + Delta-G solvation = -2.141562 kcal Electronic energy + Delta-G solvation = -32429.074231 eV Core-core repulsion = 28229.219924 eV Total energy + Delta-G solvation = -4199.854307 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66831 -40.36034 -38.63542 -37.53269 -36.21680 -35.33630 -32.84328 -32.12847 -31.59456 -30.54915 -29.92995 -28.30208 -26.99791 -26.42057 -24.42034 -23.25080 -22.65245 -21.91016 -21.30068 -20.97383 -19.58673 -19.19671 -18.18085 -17.90373 -16.83523 -16.66113 -16.47863 -15.76056 -15.58419 -15.14144 -14.70070 -14.45734 -14.36652 -14.31110 -14.25767 -13.93251 -13.86632 -13.61756 -13.49517 -13.33995 -12.88804 -12.66856 -12.45815 -12.33857 -12.16193 -11.96969 -11.73963 -11.55631 -11.34259 -11.29109 -11.14253 -10.98243 -10.86389 -10.70490 -10.50659 -10.29126 -10.00086 -9.77114 -9.62506 -9.23704 -8.56105 -8.29760 -8.22394 -7.79258 -7.33519 -6.04709 -4.01875 0.97837 1.43824 2.09126 2.45738 2.92014 2.95597 3.29591 3.36936 3.39858 3.71377 3.96378 4.43032 4.52188 4.63561 4.73003 4.81476 4.84372 5.01220 5.09331 5.15343 5.24320 5.28052 5.30991 5.36751 5.43389 5.46153 5.53842 5.63783 5.68162 5.74961 5.80148 5.83879 5.86348 5.92990 5.99512 6.17261 6.24307 6.37921 6.49065 6.50169 6.51954 6.54653 6.60372 6.61918 6.85174 6.95545 6.98675 7.08285 7.19233 7.33762 7.61498 7.89138 7.93187 8.07636 8.67011 9.03309 9.57476 11.08319 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.002520 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.380798 B =11109.757324 C =12048.526801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.100 4.100 4 C -0.127 4.127 5 C 0.089 3.911 6 N -0.594 5.594 7 H 0.418 0.582 8 C 0.095 3.905 9 C -0.180 4.180 10 C 0.176 3.824 11 H 0.082 0.918 12 C 0.489 3.511 13 O -0.496 6.496 14 O -0.511 6.511 15 N -0.521 5.521 16 C 0.047 3.953 17 C 0.059 3.941 18 N -0.530 5.530 19 C 0.162 3.838 20 C -0.508 4.508 21 H 0.080 0.920 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.874 3.126 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.268 1.268 28 C 0.069 3.931 29 C 0.054 3.946 30 C -0.081 4.081 31 C -0.062 4.062 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.181 0.819 38 H 0.406 0.594 39 H 0.038 0.962 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.033 0.967 43 H -0.011 1.011 44 H 0.024 0.976 45 H 0.263 0.737 46 H 0.029 0.971 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.080 0.920 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 15.646 16.752 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.117 4.117 3 C -0.119 4.119 4 C -0.147 4.147 5 C -0.017 4.017 6 N -0.196 5.196 7 H 0.255 0.745 8 C -0.032 4.032 9 C -0.188 4.188 10 C 0.066 3.934 11 H 0.099 0.901 12 C 0.330 3.670 13 O -0.383 6.383 14 O -0.322 6.322 15 N -0.248 5.248 16 C -0.080 4.080 17 C -0.070 4.070 18 N -0.255 5.255 19 C 0.036 3.964 20 C -0.546 4.546 21 H 0.098 0.902 22 C -0.133 4.133 23 N -0.540 5.540 24 Si 0.702 3.298 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.192 1.192 28 C -0.060 4.060 29 C -0.073 4.073 30 C -0.086 4.086 31 C -0.081 4.081 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.198 0.802 38 H 0.264 0.736 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.007 0.993 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.112 0.888 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.067 15.579 16.344 27.713 hybrid contribution 1.096 -0.630 0.920 1.563 sum -14.971 14.949 17.265 27.307 Atomic orbital electron populations 1.20714 0.91316 1.02419 1.02031 1.19358 0.95922 0.92775 1.03622 1.20655 0.92844 0.97501 1.00924 1.19976 0.93799 0.94730 1.06216 1.18229 0.83463 0.95216 1.04802 1.41828 1.05899 1.06955 1.64933 0.74533 1.21840 0.99915 0.81542 0.99949 1.19415 0.92001 0.91363 1.16020 1.19131 0.94467 0.90271 0.89531 0.90053 1.23271 0.77136 0.77853 0.88762 1.90663 1.49056 1.31401 1.67193 1.84557 1.46886 1.66748 1.34005 1.61923 1.30289 1.05392 1.27199 1.22524 0.97926 0.85745 1.01825 1.22057 0.95460 0.98698 0.90802 1.62125 1.37317 1.03901 1.22154 1.20152 0.85833 0.93841 0.96564 1.21032 1.10930 1.29243 0.93437 0.90181 1.24897 0.97416 0.96308 0.94717 1.69894 1.29879 1.44843 1.09407 0.86872 0.80648 0.81829 0.80475 1.20165 1.21264 1.19233 1.22021 0.93873 0.88576 1.01483 1.22458 0.98251 0.99446 0.87119 1.18859 0.92932 0.91315 1.05510 1.20107 0.91586 0.97685 0.98686 0.91572 0.91738 0.91943 0.85990 0.86346 0.80170 0.73601 0.94406 0.88526 0.90930 0.94893 0.99317 0.95818 0.92699 0.95303 0.88840 0.93733 0.90143 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.99 36.01 0.36 -0.37 16 2 C -0.12 -1.07 5.85 -104.98 -0.61 -1.69 16 3 C -0.10 -0.87 9.66 -39.54 -0.38 -1.25 16 4 C -0.13 -1.16 10.08 -39.43 -0.40 -1.56 16 5 C 0.09 0.95 7.28 -83.99 -0.61 0.34 16 6 N -0.59 -5.50 6.07 -10.65 -0.06 -5.56 16 7 H 0.42 2.62 8.96 -40.82 -0.37 2.25 16 8 C 0.10 1.04 9.25 -16.73 -0.15 0.88 16 9 C -0.18 -2.17 4.67 -102.71 -0.48 -2.64 16 10 C 0.18 2.23 2.50 -70.02 -0.18 2.05 16 11 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 12 C 0.49 6.08 7.32 36.01 0.26 6.34 16 13 O -0.50 -7.47 14.59 -18.75 -0.27 -7.75 16 14 O -0.51 -4.82 13.34 -39.25 -0.52 -5.35 16 15 N -0.52 -7.59 4.00 -229.27 -0.92 -8.51 16 16 C 0.05 0.74 5.21 -3.77 -0.02 0.72 16 17 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 18 N -0.53 -11.18 4.70 -235.91 -1.11 -12.29 16 19 C 0.16 3.97 3.79 -4.97 -0.02 3.95 16 20 C -0.51 -14.36 9.03 -34.44 -0.31 -14.67 16 21 H 0.08 2.45 7.38 -52.48 -0.39 2.06 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 24 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 28 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 29 C 0.05 0.83 4.99 -3.77 -0.02 0.81 16 30 C -0.08 -0.95 6.35 -105.14 -0.67 -1.62 16 31 C -0.06 -0.66 9.67 -39.64 -0.38 -1.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.18 1.90 7.37 -52.49 -0.39 1.52 16 38 H 0.41 2.13 9.10 45.56 0.41 2.55 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.50 5.30 -51.93 -0.28 1.23 16 41 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 44 H 0.02 0.58 7.45 -51.93 -0.39 0.20 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 1.95 6.79 -51.93 -0.35 1.60 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 1.09 5.11 -51.93 -0.27 0.82 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -34.25 397.22 -11.15 -45.40 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.61 Total: 3.45 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.75 Total: -5.55 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -1.32 Total: -53.12 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.80 Total: -13.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.25 -11.15 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020728368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.263 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds