Wall clock time and date at job start Tue Mar 31 2020 05:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38826 * 119.73647 * 2 1 4 4 C 1.37754 * 120.66667 * 180.02562 * 3 2 1 5 5 C 1.39130 * 119.77956 * 359.97438 * 4 3 2 6 6 N 1.37678 * 133.51299 * 180.02562 * 5 4 3 7 7 H 0.97004 * 125.06678 * 0.02562 * 6 5 4 8 8 C 1.36834 * 109.87592 * 179.75934 * 6 5 4 9 9 C 1.34238 * 109.92898 * 0.40794 * 8 6 5 10 10 C 1.50697 * 126.50349 * 179.86452 * 9 8 6 11 11 H 1.09001 * 109.47372 * 219.68782 * 10 9 8 12 12 C 1.50709 * 109.46881 * 99.69112 * 10 9 8 13 13 O 1.20825 * 119.99307 * 240.00300 * 12 10 9 14 14 O 1.34227 * 119.99890 * 59.99782 * 12 10 9 15 15 N 1.46896 * 109.47387 * 339.69307 * 10 9 8 16 16 C 1.46951 * 111.00239 * 179.97438 * 15 10 9 17 17 C 1.53055 * 109.36408 * 183.18292 * 16 15 10 18 18 N 1.46953 * 109.36514 * 301.59926 * 17 16 15 19 19 C 1.46906 * 110.99875 * 183.18861 * 18 17 16 20 20 C 1.50699 * 109.47140 * 170.00105 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99892 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 120.00241 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47135 * 90.00125 * 24 22 20 26 26 H 1.48503 * 109.47215 * 210.00315 * 24 22 20 27 27 H 1.48508 * 109.46958 * 330.00276 * 24 22 20 28 28 C 1.46951 * 110.88066 * 59.32047 * 18 17 16 29 29 C 1.46966 * 110.99706 * 303.79435 * 15 10 9 30 30 C 1.40674 * 119.32778 * 0.02562 * 5 4 3 31 31 C 1.36627 * 119.73249 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46772 * 89.99956 * 1 2 3 33 33 H 1.08994 * 109.47343 * 209.99952 * 1 2 3 34 34 H 1.09003 * 109.46759 * 330.00875 * 1 2 3 35 35 H 1.07997 * 119.66735 * 0.03994 * 3 2 1 36 36 H 1.07996 * 120.11005 * 179.97438 * 4 3 2 37 37 H 1.07999 * 125.03768 * 180.28949 * 8 6 5 38 38 H 0.96700 * 116.99523 * 179.97438 * 14 12 10 39 39 H 1.09005 * 109.48678 * 63.21907 * 16 15 10 40 40 H 1.08996 * 109.50863 * 303.16254 * 16 15 10 41 41 H 1.09003 * 109.48634 * 181.63290 * 17 16 15 42 42 H 1.08998 * 109.50425 * 61.57881 * 17 16 15 43 43 H 1.09004 * 109.47040 * 290.00043 * 19 18 17 44 44 H 1.09000 * 109.47033 * 49.99995 * 19 18 17 45 45 H 0.97002 * 119.99998 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.48678 * 60.64401 * 28 18 17 47 47 H 1.09004 * 109.48825 * 180.70927 * 28 18 17 48 48 H 1.08998 * 109.48984 * 296.78002 * 29 15 10 49 49 H 1.09004 * 109.48230 * 56.82233 * 29 15 10 50 50 H 1.08002 * 120.12098 * 359.97321 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2055 0.0000 4 6 3.5730 1.2278 -0.0005 5 6 4.2836 0.0316 -0.0005 6 7 5.6261 -0.2735 -0.0005 7 1 6.3455 0.3772 -0.0002 8 6 5.7946 -1.6314 0.0049 9 6 4.5986 -2.2409 -0.0005 10 6 4.3498 -3.7272 -0.0001 11 1 3.5132 -3.9558 -0.6604 12 6 4.0239 -4.1816 1.3994 13 8 4.7220 -5.0025 1.9459 14 8 2.9583 -3.6742 2.0387 15 7 5.5524 -4.4251 -0.4739 16 6 5.3465 -5.8800 -0.4864 17 6 6.6444 -6.5727 -0.9087 18 7 7.0448 -6.0890 -2.2373 19 6 8.2475 -6.7869 -2.7112 20 6 8.4858 -6.4494 -4.1605 21 1 7.8111 -5.7834 -4.6779 22 6 9.5646 -6.9917 -4.8261 23 7 9.7729 -6.6968 -6.0907 24 14 10.7312 -8.1441 -3.9314 25 1 10.2543 -9.5428 -4.0776 26 1 12.0917 -8.0216 -4.5138 27 1 10.7750 -7.7841 -2.4913 28 6 7.2507 -4.6340 -2.2249 29 6 5.9532 -3.9410 -1.8024 30 6 3.5810 -1.1871 -0.0005 31 6 2.1847 -1.1864 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8901 0.5137 35 1 1.6460 2.1351 0.0007 36 1 4.0996 2.1707 -0.0009 37 1 6.7485 -2.1378 0.0105 38 1 2.7893 -3.9965 2.9346 39 1 4.5547 -6.1292 -1.1929 40 1 5.0629 -6.2161 0.5110 41 1 6.4856 -7.6504 -0.9467 42 1 7.4293 -6.3459 -0.1873 43 1 9.1069 -6.4728 -2.1189 44 1 8.1079 -7.8629 -2.6069 45 1 10.5317 -7.0786 -6.5591 46 1 8.0425 -4.3849 -1.5183 47 1 7.5342 -4.2983 -3.2224 48 1 5.1685 -4.1678 -2.5241 49 1 6.1116 -2.8632 -1.7640 50 1 1.6423 -2.1203 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020728368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:21 Heat of formation + Delta-G solvation = -26.467683 kcal Electronic energy + Delta-G solvation = -32430.129091 eV Core-core repulsion = 28229.219924 eV Total energy + Delta-G solvation = -4200.909167 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.48689 -41.31888 -39.93103 -38.27989 -37.26377 -36.62327 -34.69591 -33.30936 -32.33567 -31.90028 -31.10741 -29.63351 -28.26912 -27.09996 -25.95060 -24.51927 -23.47453 -23.14043 -22.65177 -21.96011 -20.77705 -20.32185 -19.01889 -18.93375 -18.77265 -17.63643 -17.49185 -16.85343 -16.68873 -16.29033 -15.92385 -15.86158 -15.59283 -15.45066 -15.25509 -15.06686 -14.98417 -14.84003 -14.55620 -14.35564 -14.15201 -13.84525 -13.64807 -13.51183 -13.28504 -13.06014 -12.83507 -12.79225 -12.52620 -12.43142 -12.36763 -12.19540 -12.13319 -12.03329 -11.88663 -11.79241 -11.52801 -11.46230 -11.11542 -10.77457 -10.45811 -9.49491 -9.03340 -8.97518 -8.55872 -8.27954 -6.30957 0.23217 0.71027 1.15493 1.35266 1.35985 1.46995 1.60440 1.99999 2.23831 2.34552 2.84428 3.02109 3.04916 3.21959 3.74863 3.80769 3.91151 3.99434 4.13050 4.16503 4.20721 4.30632 4.34637 4.41029 4.45314 4.47350 4.58917 4.63185 4.65227 4.74070 4.81527 4.89731 4.93675 4.95450 4.96462 4.97883 5.01325 5.10062 5.15800 5.21743 5.31262 5.52237 5.53417 5.64461 5.73910 5.77653 5.83749 5.90148 5.92687 6.02957 6.27912 6.36882 6.64274 6.67989 6.74767 7.06020 7.32718 8.88374 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.002520 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.380798 B =11109.757324 C =12048.526801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.130 4.130 5 C 0.074 3.926 6 N -0.583 5.583 7 H 0.431 0.569 8 C 0.092 3.908 9 C -0.197 4.197 10 C 0.178 3.822 11 H 0.085 0.915 12 C 0.497 3.503 13 O -0.526 6.526 14 O -0.502 6.502 15 N -0.522 5.522 16 C 0.056 3.944 17 C 0.060 3.940 18 N -0.545 5.545 19 C 0.172 3.828 20 C -0.513 4.513 21 H 0.040 0.960 22 C 0.010 3.990 23 N -0.947 5.947 24 Si 0.945 3.055 25 H -0.266 1.266 26 H -0.281 1.281 27 H -0.254 1.254 28 C 0.072 3.928 29 C 0.071 3.929 30 C -0.101 4.101 31 C -0.080 4.080 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.183 0.817 38 H 0.426 0.574 39 H 0.037 0.963 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.030 0.970 43 H -0.014 1.014 44 H 0.027 0.973 45 H 0.267 0.733 46 H 0.030 0.970 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.100 0.900 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 16.599 18.864 30.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.150 4.150 5 C -0.032 4.032 6 N -0.187 5.187 7 H 0.270 0.730 8 C -0.036 4.036 9 C -0.205 4.205 10 C 0.068 3.932 11 H 0.103 0.897 12 C 0.340 3.660 13 O -0.415 6.415 14 O -0.314 6.314 15 N -0.248 5.248 16 C -0.071 4.071 17 C -0.068 4.068 18 N -0.269 5.269 19 C 0.045 3.955 20 C -0.551 4.551 21 H 0.058 0.942 22 C -0.188 4.188 23 N -0.587 5.587 24 Si 0.769 3.231 25 H -0.191 1.191 26 H -0.207 1.207 27 H -0.178 1.178 28 C -0.056 4.056 29 C -0.056 4.056 30 C -0.106 4.106 31 C -0.099 4.099 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.200 0.800 38 H 0.287 0.713 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.048 0.952 43 H 0.004 0.996 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.118 0.882 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.013 16.569 18.491 30.098 hybrid contribution 1.231 -0.784 0.262 1.483 sum -15.783 15.785 18.754 29.154 Atomic orbital electron populations 1.20754 0.89662 1.03338 1.02610 1.19704 0.97266 0.92589 1.02430 1.21026 0.92952 0.98355 0.99934 1.20313 0.94191 0.95132 1.05385 1.18493 0.83841 0.95574 1.05339 1.41782 1.06094 1.06656 1.64128 0.72962 1.21871 0.99668 0.82317 0.99793 1.19408 0.92738 0.90929 1.17459 1.19084 0.93484 0.90683 0.89923 0.89726 1.23114 0.77200 0.77138 0.88587 1.90651 1.50221 1.32786 1.67888 1.84508 1.45378 1.66164 1.35383 1.61841 1.31783 1.04915 1.26295 1.22408 0.96397 0.86328 1.02011 1.22117 0.96425 0.99407 0.88889 1.62049 1.35682 1.04884 1.24329 1.19913 0.87192 0.94266 0.94099 1.21222 1.10245 1.28337 0.95338 0.94161 1.25799 0.99340 0.98162 0.95459 1.70042 1.30940 1.46492 1.11273 0.85746 0.78112 0.79594 0.79663 1.19053 1.20683 1.17799 1.21944 0.95966 0.87705 0.99985 1.22240 0.95930 1.00051 0.87396 1.19040 0.93499 0.91606 1.06432 1.20247 0.91423 0.98417 0.99799 0.91071 0.91430 0.90468 0.83511 0.84131 0.80044 0.71276 0.94483 0.87782 0.90269 0.95216 0.99587 0.95463 0.92434 0.95192 0.91739 0.94774 0.88160 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.99 71.24 0.71 -0.50 16 2 C -0.12 -1.98 5.85 -20.10 -0.12 -2.10 16 3 C -0.10 -1.55 9.66 22.30 0.22 -1.33 16 4 C -0.13 -2.08 10.08 22.37 0.23 -1.86 16 5 C 0.07 1.47 7.28 39.03 0.28 1.75 16 6 N -0.58 -10.03 6.07 -187.61 -1.14 -11.17 16 7 H 0.43 4.74 8.96 -92.71 -0.83 3.91 16 8 C 0.09 1.93 9.25 83.00 0.77 2.70 16 9 C -0.20 -4.58 4.67 -18.63 -0.09 -4.66 16 10 C 0.18 4.37 2.50 43.43 0.11 4.48 16 11 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 12 C 0.50 11.78 7.32 71.24 0.52 12.30 16 13 O -0.53 -15.24 14.59 21.97 0.32 -14.92 16 14 O -0.50 -8.64 13.34 -51.39 -0.69 -9.32 16 15 N -0.52 -14.90 4.00 -879.28 -3.51 -18.42 16 16 C 0.06 1.72 5.21 86.31 0.45 2.16 16 17 C 0.06 2.13 5.61 86.31 0.48 2.62 16 18 N -0.54 -23.22 4.70 -900.28 -4.23 -27.45 16 19 C 0.17 8.47 3.79 85.56 0.32 8.79 16 20 C -0.51 -29.88 9.03 25.60 0.23 -29.65 16 21 H 0.04 2.60 7.38 -2.91 -0.02 2.58 16 22 C 0.01 0.57 5.47 84.65 0.46 1.04 16 23 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 24 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 28 C 0.07 2.80 5.43 86.31 0.47 3.27 16 29 C 0.07 2.18 4.99 86.30 0.43 2.61 16 30 C -0.10 -2.26 6.35 -20.20 -0.13 -2.39 16 31 C -0.08 -1.61 9.67 22.23 0.22 -1.40 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.72 8.07 -2.39 -0.02 0.70 16 34 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.18 3.69 7.37 -2.91 -0.02 3.67 16 38 H 0.43 3.60 9.10 -74.06 -0.67 2.93 16 39 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 3.12 5.30 -2.39 -0.01 3.11 16 41 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H -0.01 -0.67 7.18 -2.38 -0.02 -0.69 16 44 H 0.03 1.32 7.45 -2.39 -0.02 1.30 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.06 2.84 6.79 -2.39 -0.02 2.83 16 48 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.10 2.68 5.11 -2.39 -0.01 2.67 16 50 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -74.80 397.22 -2.07 -76.87 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.57 Total: 19.15 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.57 Total: -2.17 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -8.59 Total: -116.06 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.37 Total: -24.25 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -74.80 -2.07 -76.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020728368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.403 kcal (2) G-P(sol) polarization free energy of solvation -74.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds