Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38834 * 119.73238 * 2 1 4 4 C 1.37746 * 120.66579 * 179.97438 * 3 2 1 5 5 C 1.39124 * 119.77911 * 359.76408 * 4 3 2 6 6 N 1.37689 * 133.50590 * 179.54784 * 5 4 3 7 7 H 0.97004 * 125.06376 * 0.71788 * 6 5 4 8 8 C 1.36836 * 109.87475 * 180.45920 * 6 5 4 9 9 C 1.34236 * 109.93046 * 0.26330 * 8 6 5 10 10 C 1.50699 * 126.50064 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47106 * 147.77567 * 10 9 8 12 12 C 1.50694 * 109.47267 * 267.77526 * 10 9 8 13 13 O 1.20828 * 120.00200 * 89.87986 * 12 10 9 14 14 O 1.34231 * 120.00043 * 269.87776 * 12 10 9 15 15 N 1.46899 * 109.46976 * 27.77873 * 10 9 8 16 16 C 1.46959 * 110.99776 * 186.41762 * 15 10 9 17 17 C 1.53049 * 109.36279 * 176.80863 * 16 15 10 18 18 N 1.46953 * 109.36535 * 58.40062 * 17 16 15 19 19 C 1.46907 * 110.99957 * 176.80770 * 18 17 16 20 20 C 1.50693 * 109.46991 * 59.47864 * 19 18 17 21 21 H 1.08009 * 120.00288 * 355.97101 * 20 19 18 22 22 C 1.37879 * 120.00456 * 175.97170 * 20 19 18 23 23 N 1.31511 * 120.00392 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99529 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46943 * 90.00067 * 24 22 20 26 26 H 1.48496 * 109.46927 * 209.99918 * 24 22 20 27 27 H 1.48495 * 109.47223 * 330.00248 * 24 22 20 28 28 C 1.46949 * 110.88225 * 300.67965 * 18 17 16 29 29 C 1.46953 * 111.00350 * 62.61602 * 15 10 9 30 30 C 1.40673 * 119.33417 * 0.51135 * 5 4 3 31 31 C 1.36626 * 119.73810 * 179.97438 * 2 1 3 32 32 H 1.08989 * 109.47570 * 270.02107 * 1 2 3 33 33 H 1.09001 * 109.47095 * 30.02918 * 1 2 3 34 34 H 1.09005 * 109.46664 * 150.02334 * 1 2 3 35 35 H 1.07996 * 119.66629 * 359.97358 * 3 2 1 36 36 H 1.08004 * 120.11334 * 180.02562 * 4 3 2 37 37 H 1.07998 * 125.03350 * 180.24165 * 8 6 5 38 38 H 0.96703 * 117.00006 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.49154 * 296.77791 * 16 15 10 40 40 H 1.09002 * 109.49190 * 56.84586 * 16 15 10 41 41 H 1.09004 * 109.49355 * 298.43101 * 17 16 15 42 42 H 1.09001 * 109.49163 * 178.36800 * 17 16 15 43 43 H 1.09006 * 109.47029 * 179.47588 * 19 18 17 44 44 H 1.09000 * 109.47184 * 299.47393 * 19 18 17 45 45 H 0.97002 * 119.99473 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.49012 * 299.35041 * 28 18 17 47 47 H 1.09004 * 109.49073 * 179.29017 * 28 18 17 48 48 H 1.08993 * 109.49292 * 303.15821 * 29 15 10 49 49 H 1.09000 * 109.48878 * 63.20328 * 29 15 10 50 50 H 1.07995 * 120.11506 * 0.04258 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2056 0.0000 4 6 3.5728 1.2280 0.0005 5 6 4.2833 0.0319 0.0060 6 7 5.6260 -0.2730 0.0001 7 1 6.3453 0.3778 0.0000 8 6 5.7947 -1.6310 0.0001 9 6 4.5987 -2.2406 0.0001 10 6 4.3502 -3.7269 -0.0005 11 1 3.4330 -3.9422 0.5476 12 6 4.2127 -4.2127 -1.4203 13 8 5.1892 -4.5778 -2.0312 14 8 3.0054 -4.2399 -2.0065 15 7 5.4782 -4.4122 0.6445 16 6 5.3445 -5.8710 0.5278 17 6 6.5752 -6.5440 1.1402 18 7 6.7015 -6.1404 2.5476 19 6 7.8295 -6.8258 3.1925 20 6 9.1052 -6.4870 2.4654 21 1 9.0730 -5.8814 1.5717 22 6 10.3138 -6.9500 2.9410 23 7 11.4270 -6.6547 2.3062 24 14 10.3697 -7.9968 4.4872 25 1 10.2477 -9.4303 4.1192 26 1 11.6591 -7.7740 5.1894 27 1 9.2468 -7.6182 5.3822 28 6 6.8352 -4.6817 2.6643 29 6 5.6046 -4.0087 2.0519 30 6 3.5810 -1.1869 0.0001 31 6 2.1847 -1.1863 0.0005 32 1 -0.3634 0.0004 1.0275 33 1 -0.3633 0.8897 -0.5143 34 1 -0.3633 -0.8903 -0.5135 35 1 1.6457 2.1351 -0.0004 36 1 4.0994 2.1710 0.0009 37 1 6.7486 -2.1372 -0.0003 38 1 2.9673 -4.5591 -2.9185 39 1 4.4498 -6.1978 1.0578 40 1 5.2653 -6.1460 -0.5239 41 1 7.4669 -6.2385 0.5928 42 1 6.4649 -7.6268 1.0809 43 1 7.9060 -6.5020 4.2306 44 1 7.6673 -7.9031 3.1591 45 1 12.2771 -6.9809 2.6407 46 1 7.7299 -4.3549 2.1343 47 1 6.9145 -4.4067 3.7161 48 1 5.7149 -2.9260 2.1113 49 1 4.7127 -4.3139 2.5992 50 1 1.6423 -2.1202 0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020728371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = -9.933142 kcal Electronic energy + Delta-G solvation = -32567.732629 eV Core-core repulsion = 28367.540454 eV Total energy + Delta-G solvation = -4200.192175 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59818 -40.28008 -38.56780 -37.52081 -36.13496 -35.32602 -32.79468 -32.09808 -31.56509 -30.42415 -29.94817 -28.15117 -26.84474 -26.39791 -24.37121 -23.19588 -22.70126 -21.86423 -21.41973 -21.03738 -19.39338 -19.01512 -18.07326 -17.99407 -16.80517 -16.57523 -16.41652 -15.82826 -15.42371 -15.03694 -14.65755 -14.39413 -14.31028 -14.24608 -14.21049 -14.05553 -13.85878 -13.58799 -13.55943 -12.90675 -12.81323 -12.67645 -12.33401 -12.27278 -12.16209 -12.05694 -11.66851 -11.43002 -11.33342 -11.22080 -11.08737 -10.89296 -10.80608 -10.58439 -10.43534 -10.21385 -10.11403 -9.84702 -9.64941 -9.45908 -8.58307 -8.22300 -8.20290 -7.78143 -7.19179 -6.08482 -4.08240 0.99649 1.44515 2.16451 2.50727 2.97643 3.05448 3.28423 3.35998 3.39232 3.71466 4.03009 4.40656 4.53526 4.71132 4.75294 4.88848 4.95396 5.02857 5.13287 5.22983 5.24475 5.28868 5.32605 5.42243 5.44571 5.48608 5.58058 5.66703 5.72715 5.79157 5.85004 5.88334 5.92442 5.94787 6.10133 6.25815 6.27082 6.47483 6.53357 6.55763 6.56096 6.63636 6.77623 6.85323 6.92765 6.99543 7.07321 7.15788 7.24609 7.38830 7.57375 7.97290 8.05702 8.09703 8.46874 8.95829 9.54195 11.04323 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.002583 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.285487 B =10838.575360 C =11441.082337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 C -0.102 4.102 4 C -0.125 4.125 5 C 0.089 3.911 6 N -0.594 5.594 7 H 0.418 0.582 8 C 0.108 3.892 9 C -0.185 4.185 10 C 0.180 3.820 11 H 0.074 0.926 12 C 0.485 3.515 13 O -0.490 6.490 14 O -0.518 6.518 15 N -0.516 5.516 16 C 0.052 3.948 17 C 0.067 3.933 18 N -0.537 5.537 19 C 0.153 3.847 20 C -0.549 4.549 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.899 5.899 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.264 1.264 28 C 0.064 3.936 29 C 0.063 3.937 30 C -0.086 4.086 31 C -0.069 4.069 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.184 0.816 38 H 0.407 0.593 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.263 0.737 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.983 14.736 -5.922 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.145 4.145 5 C -0.018 4.018 6 N -0.196 5.196 7 H 0.255 0.745 8 C -0.020 4.020 9 C -0.192 4.192 10 C 0.069 3.931 11 H 0.092 0.908 12 C 0.325 3.675 13 O -0.375 6.375 14 O -0.330 6.330 15 N -0.243 5.243 16 C -0.076 4.076 17 C -0.062 4.062 18 N -0.261 5.261 19 C 0.026 3.974 20 C -0.588 4.588 21 H 0.096 0.904 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.705 3.295 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.188 1.188 28 C -0.065 4.065 29 C -0.064 4.064 30 C -0.091 4.091 31 C -0.088 4.088 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.201 0.799 38 H 0.265 0.735 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.056 0.944 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.382 14.802 -5.681 25.822 hybrid contribution 0.753 -0.511 0.125 0.918 sum -19.629 14.290 -5.556 24.908 Atomic orbital electron populations 1.20713 0.91292 1.02456 1.02023 1.19352 0.95920 0.92752 1.03517 1.20652 0.92846 0.97485 1.01088 1.19986 0.93796 0.94750 1.06015 1.18235 0.83539 0.95164 1.04814 1.41874 1.05855 1.07099 1.64761 0.74470 1.21908 1.00186 0.81307 0.98558 1.19375 0.91905 0.91228 1.16732 1.19099 0.95299 0.90207 0.88447 0.90818 1.23280 0.80281 0.74162 0.89742 1.90743 1.39079 1.43024 1.64650 1.84532 1.34655 1.79837 1.33980 1.61939 1.38990 1.07153 1.16184 1.22403 0.98707 0.85778 1.00703 1.21907 0.96165 0.98474 0.89672 1.62633 1.43759 1.05644 1.14076 1.20178 0.88012 0.94224 0.94962 1.21721 0.90456 1.33906 1.12710 0.90399 1.24975 0.95618 0.95660 0.96826 1.69934 0.98066 1.45724 1.40000 0.86821 0.77584 0.81108 0.84010 1.20245 1.21396 1.18837 1.21947 0.95859 0.88993 0.99680 1.22286 0.98760 0.99780 0.85594 1.18937 0.92952 0.91545 1.05669 1.20136 0.91607 0.97786 0.99270 0.91566 0.91915 0.91720 0.85967 0.86299 0.79923 0.73490 0.94622 0.90506 0.92334 0.91226 0.95242 0.95786 0.92749 0.92671 0.91210 0.90535 0.94388 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.99 36.00 0.36 -0.39 16 2 C -0.11 -1.09 5.85 -104.99 -0.61 -1.70 16 3 C -0.10 -0.91 9.66 -39.54 -0.38 -1.29 16 4 C -0.12 -1.19 10.08 -39.43 -0.40 -1.59 16 5 C 0.09 1.00 7.28 -83.99 -0.61 0.39 16 6 N -0.59 -6.04 6.07 -10.65 -0.06 -6.11 16 7 H 0.42 3.01 8.96 -40.82 -0.37 2.65 16 8 C 0.11 1.33 9.96 -16.73 -0.17 1.16 16 9 C -0.18 -2.40 4.49 -102.71 -0.46 -2.86 16 10 C 0.18 2.44 2.48 -70.02 -0.17 2.27 16 11 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 12 C 0.49 6.72 6.34 36.00 0.23 6.95 16 13 O -0.49 -8.32 16.00 -18.75 -0.30 -8.62 16 14 O -0.52 -5.48 13.42 -39.26 -0.53 -6.00 16 15 N -0.52 -8.02 3.96 -229.28 -0.91 -8.93 16 16 C 0.05 0.85 5.20 -3.77 -0.02 0.83 16 17 C 0.07 1.31 5.24 -3.77 -0.02 1.29 16 18 N -0.54 -11.09 4.92 -235.91 -1.16 -12.25 16 19 C 0.15 3.64 4.23 -4.98 -0.02 3.62 16 20 C -0.55 -15.15 8.23 -34.44 -0.28 -15.44 16 21 H 0.08 2.36 6.06 -52.48 -0.32 2.04 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 24 Si 0.88 21.33 27.55 -169.99 -4.68 16.65 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.26 -6.16 6.43 56.52 0.36 -5.79 16 28 C 0.06 1.20 5.31 -3.77 -0.02 1.18 16 29 C 0.06 0.97 5.29 -3.77 -0.02 0.95 16 30 C -0.09 -1.06 6.35 -105.13 -0.67 -1.73 16 31 C -0.07 -0.77 9.67 -39.64 -0.38 -1.15 16 32 H 0.07 0.42 8.14 -51.94 -0.42 0.00 16 33 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.18 2.30 8.01 -52.49 -0.42 1.88 16 38 H 0.41 2.59 9.10 45.56 0.41 3.00 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.28 5.89 -51.93 -0.31 0.97 16 41 H 0.06 1.35 6.48 -51.93 -0.34 1.01 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 44 H 0.02 0.58 7.77 -51.93 -0.40 0.17 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 1.18 6.92 -51.93 -0.36 0.82 16 47 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 48 H 0.08 1.08 6.20 -51.93 -0.32 0.75 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -33.83 397.40 -11.22 -45.05 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.59 Total: 6.35 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.75 Total: -5.55 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -1.36 Total: -53.86 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.83 Total: -14.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.68 Total: 16.65 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.83 -11.22 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020728371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.120 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds